Wall clock time and date at job start Tue Mar 31 2020 12:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35931 * 116.99829 * 2 1 4 4 C 1.38745 * 120.42001 * 359.97438 * 3 2 1 5 5 N 1.31873 * 120.86369 * 179.97438 * 4 3 2 6 6 C 1.31867 * 121.83665 * 359.97438 * 5 4 3 7 7 Cl 1.73598 * 119.62498 * 179.97438 * 6 5 4 8 8 C 1.39088 * 120.74527 * 0.02562 * 6 5 4 9 9 N 1.39768 * 120.46401 * 180.02562 * 8 6 5 10 10 C 1.39784 * 119.99920 * 172.44186 * 9 8 6 11 11 C 1.38979 * 120.00684 * 318.46836 * 10 9 8 12 12 C 1.37996 * 119.98945 * 179.73955 * 11 10 9 13 13 C 1.38915 * 120.00625 * 0.53123 * 12 11 10 14 14 O 1.35784 * 119.99383 * 179.70069 * 13 12 11 15 15 C 1.34810 * 117.00216 * 185.63387 * 14 13 12 16 16 H 1.08003 * 120.00071 * 354.88628 * 15 14 13 17 17 C 1.38610 * 119.99908 * 174.88885 * 15 14 13 18 18 N 1.31592 * 120.00146 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00188 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47043 * 59.99707 * 19 17 15 21 21 H 1.48495 * 109.47614 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47235 * 300.00099 * 19 17 15 23 23 C 1.38918 * 120.01530 * 359.72078 * 13 12 11 24 24 C 1.37992 * 120.00572 * 0.02562 * 23 13 12 25 25 C 1.38990 * 120.41900 * 179.97438 * 3 2 1 26 26 H 1.09004 * 109.47024 * 60.00395 * 1 2 3 27 27 H 1.08999 * 109.46896 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47210 * 300.00151 * 1 2 3 29 29 H 1.07996 * 119.56961 * 359.70160 * 4 3 2 30 30 H 0.96997 * 120.00312 * 352.44894 * 9 8 6 31 31 H 1.07998 * 120.00391 * 359.97438 * 11 10 9 32 32 H 1.07989 * 119.99437 * 180.23326 * 12 11 10 33 33 H 0.96996 * 120.00073 * 179.97438 * 18 17 15 34 34 H 1.07999 * 119.99516 * 180.02562 * 23 13 12 35 35 H 1.08000 * 119.99841 * 179.97438 * 24 23 13 36 36 H 1.08003 * 120.84029 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 1.2990 2.3803 -0.0005 5 7 1.8885 3.5599 0.0000 6 6 3.2016 3.6813 0.0015 7 17 3.9172 5.2629 0.0014 8 6 4.0197 2.5564 0.0021 9 7 5.4108 2.6919 0.0043 10 6 6.2225 1.5652 0.1641 11 6 5.8813 0.5889 1.0925 12 6 6.6801 -0.5259 1.2462 13 6 7.8308 -0.6669 0.4809 14 8 8.6197 -1.7610 0.6366 15 6 9.7798 -1.7819 -0.0498 16 1 10.0069 -0.9920 -0.7505 17 6 10.6810 -2.8170 0.1436 18 7 10.4045 -3.7792 0.9976 19 14 12.2881 -2.8464 -0.8081 20 1 13.0719 -1.6249 -0.4937 21 1 13.0700 -4.0485 -0.4225 22 1 12.0004 -2.8886 -2.2644 23 6 8.1748 0.3113 -0.4435 24 6 7.3737 1.4238 -0.6014 25 6 3.4335 1.2941 0.0005 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 0.2205 2.3235 -0.0058 30 1 5.8129 3.5678 -0.1050 31 1 4.9893 0.7008 1.6909 32 1 6.4131 -1.2864 1.9649 33 1 11.0350 -4.5038 1.1327 34 1 9.0693 0.2012 -1.0386 35 1 7.6415 2.1845 -1.3198 36 1 4.0416 0.4015 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212605953.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:38 Heat of formation + Delta-G solvation = -15.537143 kcal Electronic energy + Delta-G solvation = -23190.042456 eV Core-core repulsion = 19472.921487 eV Total energy + Delta-G solvation = -3717.120970 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.071 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.97698 -40.86214 -39.63039 -38.69090 -37.50108 -36.28042 -34.21749 -32.81253 -31.81593 -31.03500 -28.97002 -28.25880 -27.19873 -24.95241 -24.07419 -23.36693 -22.42303 -20.05827 -19.38354 -19.15937 -18.74360 -18.11058 -17.30783 -16.95624 -16.88753 -16.30067 -16.16509 -15.61011 -15.46067 -15.26443 -15.20166 -14.60912 -14.59379 -14.20347 -13.88947 -13.60653 -13.28573 -13.16371 -12.93129 -12.80980 -12.76544 -12.48416 -12.31948 -12.16043 -12.11482 -12.08366 -11.23146 -10.80256 -10.77080 -9.93998 -9.88175 -9.34476 -8.45751 -8.30473 -6.12348 -0.07962 0.03857 0.46885 0.70061 0.82931 1.37649 1.47462 1.53255 1.92149 2.19037 2.34168 2.53655 2.79069 3.13184 3.47778 3.49704 3.60528 3.77821 4.01647 4.03513 4.05627 4.29175 4.44455 4.44727 4.47594 4.57470 4.75144 4.80352 4.86664 5.03059 5.11123 5.15461 5.35349 5.41486 5.62388 5.78391 6.02163 6.16963 6.22314 6.51821 6.64701 6.99097 7.78309 8.77076 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.017871 B = 0.002967 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.392653 B = 9433.640822 C =10696.643510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.322 6.322 3 C 0.134 3.866 4 C -0.017 4.017 5 N -0.418 5.418 6 C 0.055 3.945 7 Cl -0.030 7.030 8 C 0.219 3.781 9 N -0.652 5.652 10 C 0.073 3.927 11 C -0.088 4.088 12 C -0.175 4.175 13 C 0.108 3.892 14 O -0.228 6.228 15 C -0.413 4.413 16 H 0.105 0.895 17 C -0.022 4.022 18 N -0.920 5.920 19 Si 1.016 2.984 20 H -0.257 1.257 21 H -0.274 1.274 22 H -0.257 1.257 23 C -0.215 4.215 24 C -0.082 4.082 25 C -0.197 4.197 26 H 0.075 0.925 27 H 0.121 0.879 28 H 0.075 0.925 29 H 0.196 0.804 30 H 0.420 0.580 31 H 0.139 0.861 32 H 0.121 0.879 33 H 0.272 0.728 34 H 0.130 0.870 35 H 0.148 0.852 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.192 13.330 -3.579 22.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.233 6.233 3 C 0.085 3.915 4 C -0.178 4.178 5 N -0.129 5.129 6 C -0.114 4.114 7 Cl -0.002 7.002 8 C 0.111 3.889 9 N -0.275 5.275 10 C -0.021 4.021 11 C -0.108 4.108 12 C -0.195 4.195 13 C 0.057 3.943 14 O -0.134 6.134 15 C -0.489 4.489 16 H 0.123 0.877 17 C -0.219 4.219 18 N -0.558 5.558 19 Si 0.836 3.164 20 H -0.181 1.181 21 H -0.199 1.199 22 H -0.181 1.181 23 C -0.235 4.235 24 C -0.103 4.103 25 C -0.228 4.228 26 H 0.093 0.907 27 H 0.139 0.861 28 H 0.094 0.906 29 H 0.213 0.787 30 H 0.259 0.741 31 H 0.157 0.843 32 H 0.139 0.861 33 H 0.081 0.919 34 H 0.147 0.853 35 H 0.165 0.835 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -17.425 13.502 -3.348 22.297 hybrid contribution 1.365 -0.538 -0.217 1.483 sum -16.060 12.964 -3.565 20.945 Atomic orbital electron populations 1.23542 0.75278 1.06279 1.03215 1.86137 1.24398 1.25370 1.87441 1.19825 0.91867 0.86449 0.93387 1.22943 1.01537 0.84870 1.08483 1.66722 1.09353 1.28170 1.08618 1.20841 0.89615 0.86183 1.14759 1.98360 1.80905 1.23691 1.97247 1.18018 0.84653 0.92089 0.94171 1.41871 1.00770 1.08814 1.76030 1.17259 0.94476 0.90822 0.99591 1.20771 0.99758 0.93389 0.96846 1.20236 0.95435 1.00683 1.03146 1.19879 0.92015 0.87517 0.94841 1.83954 1.30421 1.35638 1.63391 1.21798 0.93622 1.11309 1.22174 0.87745 1.26554 1.02972 0.94300 0.98107 1.70188 1.38126 1.11952 1.35514 0.84674 0.74962 0.78658 0.78133 1.18135 1.19905 1.18105 1.21119 1.03370 0.96127 1.02876 1.20842 0.94227 0.97335 0.97856 1.20694 0.93220 0.97090 1.11764 0.90664 0.86129 0.90609 0.78747 0.74067 0.84339 0.86120 0.91861 0.85284 0.83480 0.83279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.82 113.37 1.11 1.22 16 2 O -0.32 -6.57 10.51 -92.77 -0.97 -7.55 16 3 C 0.13 3.03 6.70 22.57 0.15 3.18 16 4 C -0.02 -0.34 10.21 84.81 0.87 0.53 16 5 N -0.42 -10.13 10.33 -185.77 -1.92 -12.05 16 6 C 0.06 1.37 7.29 84.89 0.62 1.99 16 7 Cl -0.03 -0.65 27.77 -2.72 -0.08 -0.73 16 8 C 0.22 5.64 6.43 38.31 0.25 5.88 16 9 N -0.65 -16.54 5.43 -180.03 -0.98 -17.52 16 10 C 0.07 2.23 5.91 38.23 0.23 2.46 16 11 C -0.09 -2.89 7.39 22.39 0.17 -2.73 16 12 C -0.18 -7.11 9.98 22.37 0.22 -6.88 16 13 C 0.11 5.11 6.65 22.60 0.15 5.26 16 14 O -0.23 -13.19 9.75 -22.91 -0.22 -13.42 16 15 C -0.41 -23.19 9.48 67.91 0.64 -22.54 16 16 H 0.11 5.29 5.20 -2.91 -0.02 5.27 16 17 C -0.02 -1.19 5.49 84.82 0.47 -0.73 16 18 N -0.92 -55.40 13.67 21.61 0.30 -55.10 16 19 Si 1.02 41.64 29.55 68.60 2.03 43.67 16 20 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 21 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 22 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 23 C -0.22 -8.71 9.16 22.37 0.20 -8.51 16 24 C -0.08 -2.65 9.96 22.39 0.22 -2.42 16 25 C -0.20 -5.20 8.08 22.68 0.18 -5.01 16 26 H 0.07 0.53 7.67 -2.39 -0.02 0.51 16 27 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.08 0.53 7.68 -2.39 -0.02 0.51 16 29 H 0.20 2.41 6.31 -2.91 -0.02 2.39 16 30 H 0.42 9.15 7.55 -92.71 -0.70 8.45 16 31 H 0.14 4.05 6.63 -2.91 -0.02 4.03 16 32 H 0.12 4.84 8.06 -2.92 -0.02 4.82 16 33 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 34 H 0.13 5.25 5.63 -2.91 -0.02 5.23 16 35 H 0.15 3.73 8.06 -2.91 -0.02 3.70 16 36 H 0.15 4.34 5.48 -2.91 -0.02 4.33 16 Total: -1.00 -69.26 325.62 4.10 -65.16 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: 0.46 Total: 25.84 kcal Atomic # 6 Polarization: -33.79 SS G_CDS: 5.48 Total: -28.31 kcal Atomic # 7 Polarization: -82.07 SS G_CDS: -2.60 Total: -84.67 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -1.20 Total: -20.97 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -0.08 Total: -0.73 kcal Total: -69.26 4.10 -65.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212605953.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.622 kcal (2) G-P(sol) polarization free energy of solvation -69.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds