Wall clock time and date at job start Tue Mar 31 2020 12:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35776 * 116.99551 * 2 1 4 4 N 1.32155 * 119.71906 * 359.97438 * 3 2 1 5 5 C 1.32088 * 121.70471 * 179.97438 * 4 3 2 6 6 Cl 1.73606 * 119.52622 * 180.02562 * 5 4 3 7 7 C 1.38229 * 120.95011 * 0.02562 * 5 4 3 8 8 C 1.38691 * 119.33636 * 359.97438 * 7 5 4 9 9 C 1.39022 * 118.43550 * 359.97438 * 8 7 5 10 10 N 1.40006 * 120.49490 * 179.97438 * 9 8 7 11 11 C 1.39750 * 119.99928 * 352.48979 * 10 9 8 12 12 C 1.38987 * 120.00939 * 318.50369 * 11 10 9 13 13 C 1.37988 * 119.98567 * 179.81432 * 12 11 10 14 14 C 1.38913 * 120.01253 * 0.44335 * 13 12 11 15 15 O 1.35791 * 119.99116 * 179.76970 * 14 13 12 16 16 C 1.34809 * 116.99670 * 185.63880 * 15 14 13 17 17 H 1.08002 * 120.00563 * 354.88064 * 16 15 14 18 18 C 1.38611 * 119.99805 * 174.88878 * 16 15 14 19 19 N 1.31592 * 120.00181 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00325 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46636 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47331 * 119.99503 * 20 18 16 23 23 H 1.48499 * 109.46899 * 239.99786 * 20 18 16 24 24 C 1.38915 * 120.01870 * 359.78922 * 14 13 12 25 25 C 1.37993 * 120.00506 * 0.02562 * 24 14 13 26 26 H 1.08999 * 109.47741 * 300.00206 * 1 2 3 27 27 H 1.09007 * 109.47436 * 60.00074 * 1 2 3 28 28 H 1.09004 * 109.47090 * 179.97438 * 1 2 3 29 29 H 1.07994 * 120.32862 * 180.02562 * 7 5 4 30 30 H 1.08007 * 120.78292 * 179.97438 * 8 7 5 31 31 H 0.96997 * 120.00281 * 172.49124 * 10 9 8 32 32 H 1.07997 * 120.00248 * 0.02562 * 12 11 10 33 33 H 1.08006 * 119.99307 * 180.23306 * 13 12 11 34 34 H 0.96994 * 120.00593 * 180.02562 * 19 18 16 35 35 H 1.07993 * 119.99730 * 179.97438 * 24 14 13 36 36 H 1.08005 * 120.00101 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2098 0.0000 4 7 1.3200 2.3146 -0.0005 5 6 1.8784 3.5116 0.0000 6 17 0.8712 4.9256 -0.0001 7 6 3.2533 3.6546 0.0005 8 6 4.0543 2.5224 0.0011 9 6 3.4386 1.2760 0.0016 10 7 4.2056 0.1047 0.0017 11 6 5.5921 0.1774 -0.1570 12 6 6.1405 1.0541 -1.0856 13 6 7.5098 1.1283 -1.2392 14 6 8.3397 0.3203 -0.4725 15 8 9.6870 0.3903 -0.6273 16 6 10.4291 -0.5005 0.0606 17 1 9.9550 -1.1715 0.7616 18 6 11.8007 -0.5550 -0.1317 19 7 12.3784 0.2623 -0.9860 20 14 12.8291 -1.7898 0.8209 21 1 11.9468 -2.5872 1.7103 22 1 13.5224 -2.6951 -0.1303 23 1 13.8355 -1.0681 1.6404 24 6 7.7918 -0.5596 0.4524 25 6 6.4228 -0.6317 0.6093 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.6992 4.6382 0.0013 30 1 5.1310 2.6070 0.0011 31 1 3.7746 -0.7573 0.1118 32 1 5.4951 1.6797 -1.6844 33 1 7.9362 1.8123 -1.9582 34 1 13.3382 0.2239 -1.1209 35 1 8.4374 -1.1879 1.0480 36 1 5.9968 -1.3161 1.3281 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212607260.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:43 Heat of formation + Delta-G solvation = 4.934510 kcal Electronic energy + Delta-G solvation = -23089.281570 eV Core-core repulsion = 19373.048317 eV Total energy + Delta-G solvation = -3716.233252 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.071 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.96154 -39.28417 -38.09024 -37.45698 -36.45718 -34.82203 -32.34612 -31.94547 -30.48143 -29.90888 -27.48151 -27.32864 -25.36947 -23.45590 -23.10042 -22.01809 -20.97595 -18.67274 -18.16481 -17.93955 -17.46964 -16.49142 -16.27040 -16.12805 -15.34953 -14.68653 -14.58043 -14.44648 -14.13419 -13.79920 -13.78731 -13.37383 -13.03143 -12.91635 -12.77073 -12.32703 -12.00220 -11.85870 -11.67269 -11.57250 -11.32808 -11.23424 -11.01658 -10.83465 -10.55011 -10.49386 -9.99739 -9.53295 -9.38214 -8.91153 -8.39806 -7.92220 -6.76627 -6.53625 -4.11466 0.96425 1.09681 1.76088 1.99055 2.17467 2.89727 3.06892 3.08845 3.14311 3.37974 3.57335 3.89363 4.37295 4.42526 4.70362 4.93794 4.98947 5.03027 5.14954 5.15192 5.17614 5.44393 5.45730 5.54401 5.67219 5.80153 6.00902 6.04629 6.15542 6.32087 6.62705 6.69790 6.87856 6.96540 7.11835 7.20609 7.36653 7.51320 7.65549 7.84157 7.90375 8.91712 9.59643 10.63943 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.024605 B = 0.002556 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.717887 B =10953.590719 C =11800.340535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.310 6.310 3 C 0.271 3.729 4 N -0.499 5.499 5 C 0.142 3.858 6 Cl -0.044 7.044 7 C -0.131 4.131 8 C -0.121 4.121 9 C 0.168 3.832 10 N -0.657 5.657 11 C 0.047 3.953 12 C -0.101 4.101 13 C -0.170 4.170 14 C 0.144 3.856 15 O -0.174 6.174 16 C -0.392 4.392 17 H 0.093 0.907 18 C 0.040 3.960 19 N -0.860 5.860 20 Si 0.941 3.059 21 H -0.266 1.266 22 H -0.275 1.275 23 H -0.275 1.275 24 C -0.213 4.213 25 C -0.088 4.088 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.094 0.906 29 H 0.146 0.854 30 H 0.163 0.837 31 H 0.411 0.589 32 H 0.118 0.882 33 H 0.123 0.877 34 H 0.271 0.729 35 H 0.132 0.868 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.327 2.320 2.461 19.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.218 6.218 3 C 0.085 3.915 4 N -0.224 5.224 5 C -0.021 4.021 6 Cl -0.016 7.016 7 C -0.153 4.153 8 C -0.151 4.151 9 C 0.061 3.939 10 N -0.279 5.279 11 C -0.046 4.046 12 C -0.121 4.121 13 C -0.190 4.190 14 C 0.090 3.910 15 O -0.077 6.077 16 C -0.468 4.468 17 H 0.111 0.889 18 C -0.165 4.165 19 N -0.494 5.494 20 Si 0.766 3.234 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.233 4.233 25 C -0.109 4.109 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.113 0.887 29 H 0.164 0.836 30 H 0.181 0.819 31 H 0.247 0.753 32 H 0.136 0.864 33 H 0.141 0.859 34 H 0.081 0.919 35 H 0.150 0.850 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -19.672 2.330 2.222 19.934 hybrid contribution 0.726 -0.696 0.557 1.149 sum -18.946 1.634 2.778 19.219 Atomic orbital electron populations 1.22803 0.77128 1.02754 1.02383 1.86165 1.22894 1.23713 1.88986 1.18884 0.87100 0.84334 1.01135 1.66287 1.40643 0.97586 1.17934 1.20776 0.88380 0.86761 1.06224 1.98375 1.70770 1.35458 1.96977 1.21503 0.91168 1.00404 1.02203 1.21396 1.01928 0.88961 1.02814 1.17929 0.87412 0.89013 0.99537 1.41771 1.04036 1.05512 1.76545 1.17189 0.81371 1.04758 1.01318 1.20606 0.94298 1.00239 0.96949 1.20082 0.91598 1.03969 1.03323 1.19385 0.85335 0.93235 0.93094 1.83987 1.11288 1.51123 1.61307 1.21371 0.89055 1.14736 1.21642 0.88930 1.25302 0.96105 0.98020 0.97071 1.70053 1.11287 1.35466 1.32603 0.85640 0.79560 0.79293 0.78906 1.19064 1.20084 1.20083 1.21039 0.94368 1.04345 1.03516 1.20585 0.92848 0.99779 0.97647 0.92428 0.92398 0.88725 0.83577 0.81945 0.75265 0.86371 0.85897 0.91941 0.85010 0.87010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.38 101.05 1.05 1.45 16 2 O -0.31 -3.72 9.76 -19.04 -0.19 -3.90 16 3 C 0.27 3.62 7.51 -16.95 -0.13 3.49 16 4 N -0.50 -6.70 9.19 -10.27 -0.09 -6.79 16 5 C 0.14 1.78 7.27 -17.44 -0.13 1.65 16 6 Cl -0.04 -0.48 29.10 -51.86 -1.51 -1.99 16 7 C -0.13 -1.52 9.86 -39.42 -0.39 -1.91 16 8 C -0.12 -1.55 8.13 -39.12 -0.32 -1.87 16 9 C 0.17 2.27 6.46 -83.37 -0.54 1.74 16 10 N -0.66 -8.97 5.47 -8.14 -0.04 -9.02 16 11 C 0.05 0.75 5.91 -83.69 -0.49 0.26 16 12 C -0.10 -1.65 7.39 -39.40 -0.29 -1.94 16 13 C -0.17 -3.27 9.98 -39.42 -0.39 -3.66 16 14 C 0.14 3.21 6.65 -39.08 -0.26 2.95 16 15 O -0.17 -4.70 9.76 -0.02 0.00 -4.70 16 16 C -0.39 -10.43 9.48 30.87 0.29 -10.14 16 17 H 0.09 2.26 5.20 -52.49 -0.27 1.99 16 18 C 0.04 1.05 5.49 -17.52 -0.10 0.95 16 19 N -0.86 -24.37 13.67 55.48 0.76 -23.61 16 20 Si 0.94 19.75 29.55 -169.99 -5.02 14.73 16 21 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 22 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 23 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 24 C -0.21 -4.24 9.16 -39.42 -0.36 -4.60 16 25 C -0.09 -1.48 9.96 -39.39 -0.39 -1.87 16 26 H 0.06 0.52 8.11 -51.93 -0.42 0.10 16 27 H 0.06 0.53 8.11 -51.92 -0.42 0.11 16 28 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.15 1.35 8.06 -52.49 -0.42 0.92 16 30 H 0.16 2.13 5.47 -52.48 -0.29 1.84 16 31 H 0.41 5.05 8.24 -40.82 -0.34 4.72 16 32 H 0.12 1.71 6.63 -52.49 -0.35 1.36 16 33 H 0.12 2.27 8.06 -52.48 -0.42 1.85 16 34 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 35 H 0.13 2.64 5.63 -52.49 -0.30 2.34 16 36 H 0.11 1.60 8.06 -52.48 -0.42 1.17 16 LS Contribution 329.48 15.07 4.97 4.97 Total: -1.00 -29.26 329.48 -6.79 -36.05 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -3.21 Total: 7.76 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: -2.45 Total: -13.49 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.62 Total: -39.42 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: -0.19 Total: -8.60 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.51 Total: -1.99 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.26 -6.79 -36.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212607260.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.982 kcal (2) G-P(sol) polarization free energy of solvation -29.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds