Wall clock time and date at job start Tue Mar 31 2020 12:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35776 * 116.99551 * 2 1 4 4 N 1.32155 * 119.71906 * 359.97438 * 3 2 1 5 5 C 1.32088 * 121.70471 * 179.97438 * 4 3 2 6 6 Cl 1.73606 * 119.52622 * 180.02562 * 5 4 3 7 7 C 1.38229 * 120.95011 * 0.02562 * 5 4 3 8 8 C 1.38691 * 119.33636 * 359.97438 * 7 5 4 9 9 C 1.39022 * 118.43550 * 359.97438 * 8 7 5 10 10 N 1.40006 * 120.49490 * 179.97438 * 9 8 7 11 11 C 1.39750 * 119.99928 * 352.48979 * 10 9 8 12 12 C 1.38987 * 120.00939 * 318.50369 * 11 10 9 13 13 C 1.37988 * 119.98567 * 179.81432 * 12 11 10 14 14 C 1.38913 * 120.01253 * 0.44335 * 13 12 11 15 15 O 1.35791 * 119.99116 * 179.76970 * 14 13 12 16 16 C 1.34809 * 116.99670 * 185.63880 * 15 14 13 17 17 H 1.08002 * 120.00563 * 354.88064 * 16 15 14 18 18 C 1.38611 * 119.99805 * 174.88878 * 16 15 14 19 19 N 1.31592 * 120.00181 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00325 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46636 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47331 * 119.99503 * 20 18 16 23 23 H 1.48499 * 109.46899 * 239.99786 * 20 18 16 24 24 C 1.38915 * 120.01870 * 359.78922 * 14 13 12 25 25 C 1.37993 * 120.00506 * 0.02562 * 24 14 13 26 26 H 1.08999 * 109.47741 * 300.00206 * 1 2 3 27 27 H 1.09007 * 109.47436 * 60.00074 * 1 2 3 28 28 H 1.09004 * 109.47090 * 179.97438 * 1 2 3 29 29 H 1.07994 * 120.32862 * 180.02562 * 7 5 4 30 30 H 1.08007 * 120.78292 * 179.97438 * 8 7 5 31 31 H 0.96997 * 120.00281 * 172.49124 * 10 9 8 32 32 H 1.07997 * 120.00248 * 0.02562 * 12 11 10 33 33 H 1.08006 * 119.99307 * 180.23306 * 13 12 11 34 34 H 0.96994 * 120.00593 * 180.02562 * 19 18 16 35 35 H 1.07993 * 119.99730 * 179.97438 * 24 14 13 36 36 H 1.08005 * 120.00101 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2098 0.0000 4 7 1.3200 2.3146 -0.0005 5 6 1.8784 3.5116 0.0000 6 17 0.8712 4.9256 -0.0001 7 6 3.2533 3.6546 0.0005 8 6 4.0543 2.5224 0.0011 9 6 3.4386 1.2760 0.0016 10 7 4.2056 0.1047 0.0017 11 6 5.5921 0.1774 -0.1570 12 6 6.1405 1.0541 -1.0856 13 6 7.5098 1.1283 -1.2392 14 6 8.3397 0.3203 -0.4725 15 8 9.6870 0.3903 -0.6273 16 6 10.4291 -0.5005 0.0606 17 1 9.9550 -1.1715 0.7616 18 6 11.8007 -0.5550 -0.1317 19 7 12.3784 0.2623 -0.9860 20 14 12.8291 -1.7898 0.8209 21 1 11.9468 -2.5872 1.7103 22 1 13.5224 -2.6951 -0.1303 23 1 13.8355 -1.0681 1.6404 24 6 7.7918 -0.5596 0.4524 25 6 6.4228 -0.6317 0.6093 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.6992 4.6382 0.0013 30 1 5.1310 2.6070 0.0011 31 1 3.7746 -0.7573 0.1118 32 1 5.4951 1.6797 -1.6844 33 1 7.9362 1.8123 -1.9582 34 1 13.3382 0.2239 -1.1209 35 1 8.4374 -1.1879 1.0480 36 1 5.9968 -1.3161 1.3281 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212607260.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:42 Heat of formation + Delta-G solvation = -14.224781 kcal Electronic energy + Delta-G solvation = -23090.112379 eV Core-core repulsion = 19373.048317 eV Total energy + Delta-G solvation = -3717.064061 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.071 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.99450 -40.79256 -39.16689 -38.77390 -37.45563 -36.15020 -34.19093 -33.00959 -31.88706 -31.11147 -28.83794 -28.16401 -27.18025 -24.54096 -24.25483 -23.40340 -22.39955 -20.00872 -19.42162 -19.08759 -18.99912 -17.89078 -17.29908 -17.12643 -16.42314 -16.24932 -16.13500 -15.53503 -15.49922 -15.19219 -14.94360 -14.58936 -14.57836 -14.22218 -13.88440 -13.62372 -13.34813 -13.12227 -12.98458 -12.73880 -12.67209 -12.41759 -12.23614 -12.08693 -12.08123 -11.66494 -11.19690 -10.99393 -10.81169 -10.41760 -9.85393 -9.25774 -8.44423 -8.08802 -6.10246 -0.08752 0.09920 0.50206 0.71858 0.82023 1.38413 1.45558 1.55764 2.01221 2.18891 2.23100 2.54790 2.82389 3.15666 3.44292 3.53604 3.73595 3.91482 4.07007 4.08865 4.14476 4.45220 4.46038 4.48583 4.59836 4.72561 4.78339 4.80207 4.86680 5.09533 5.16275 5.19925 5.39329 5.45327 5.66886 5.82023 6.04510 6.05617 6.33527 6.58044 6.66192 7.01052 7.81306 8.78854 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.024605 B = 0.002556 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.717887 B =10953.590719 C =11800.340535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.316 6.316 3 C 0.271 3.729 4 N -0.510 5.510 5 C 0.138 3.862 6 Cl -0.030 7.030 7 C -0.127 4.127 8 C -0.122 4.122 9 C 0.152 3.848 10 N -0.654 5.654 11 C 0.082 3.918 12 C -0.093 4.093 13 C -0.172 4.172 14 C 0.104 3.896 15 O -0.230 6.230 16 C -0.409 4.409 17 H 0.104 0.896 18 C -0.023 4.023 19 N -0.920 5.920 20 Si 1.016 2.984 21 H -0.250 1.250 22 H -0.271 1.271 23 H -0.271 1.271 24 C -0.214 4.214 25 C -0.087 4.087 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.124 0.876 29 H 0.171 0.829 30 H 0.161 0.839 31 H 0.420 0.580 32 H 0.143 0.857 33 H 0.122 0.878 34 H 0.272 0.728 35 H 0.126 0.874 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.226 1.806 3.471 22.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.224 6.224 3 C 0.086 3.914 4 N -0.236 5.236 5 C -0.025 4.025 6 Cl -0.002 7.002 7 C -0.148 4.148 8 C -0.151 4.151 9 C 0.047 3.953 10 N -0.278 5.278 11 C -0.013 4.013 12 C -0.113 4.113 13 C -0.192 4.192 14 C 0.054 3.946 15 O -0.136 6.136 16 C -0.485 4.485 17 H 0.121 0.879 18 C -0.220 4.220 19 N -0.559 5.559 20 Si 0.835 3.165 21 H -0.173 1.173 22 H -0.196 1.196 23 H -0.196 1.196 24 C -0.234 4.234 25 C -0.108 4.108 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.142 0.858 29 H 0.188 0.812 30 H 0.178 0.822 31 H 0.258 0.742 32 H 0.161 0.839 33 H 0.140 0.860 34 H 0.081 0.919 35 H 0.144 0.856 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -22.685 1.820 3.246 22.988 hybrid contribution 1.058 -0.391 0.237 1.152 sum -21.627 1.429 3.482 21.952 Atomic orbital electron populations 1.23030 0.75562 1.04662 1.02151 1.86166 1.24431 1.23050 1.88706 1.18984 0.87136 0.84801 1.00470 1.66357 1.40916 0.97915 1.18429 1.21083 0.89083 0.87038 1.05329 1.98384 1.70453 1.34539 1.96843 1.21734 0.90773 1.01205 1.01124 1.21469 1.01926 0.89245 1.02469 1.17999 0.87680 0.88953 1.00701 1.41631 1.02801 1.06284 1.77113 1.17271 0.82570 1.02374 0.99045 1.20795 0.93166 1.00451 0.96925 1.20259 0.92600 1.03407 1.02894 1.19886 0.84465 0.95250 0.95032 1.83954 1.13349 1.52864 1.63446 1.21840 0.89725 1.15043 1.21885 0.87856 1.26526 0.97222 1.00103 0.98186 1.70195 1.11589 1.38451 1.35649 0.84561 0.77664 0.76672 0.77553 1.17317 1.19620 1.19581 1.21107 0.95802 1.03672 1.02843 1.20828 0.91480 1.00396 0.98083 0.92578 0.92660 0.85836 0.81191 0.82198 0.74152 0.83911 0.85981 0.91930 0.85640 0.83842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 10.38 113.37 1.18 1.79 16 2 O -0.32 -6.69 9.76 -91.04 -0.89 -7.58 16 3 C 0.27 6.51 7.51 84.95 0.64 7.14 16 4 N -0.51 -12.40 9.19 -299.28 -2.75 -15.15 16 5 C 0.14 3.08 7.27 84.65 0.62 3.70 16 6 Cl -0.03 -0.59 29.10 -2.72 -0.08 -0.67 16 7 C -0.13 -2.57 9.86 22.38 0.22 -2.35 16 8 C -0.12 -2.77 8.13 22.57 0.18 -2.59 16 9 C 0.15 3.67 6.46 38.32 0.25 3.92 16 10 N -0.65 -15.78 5.47 -179.67 -0.98 -16.76 16 11 C 0.08 2.39 5.91 38.24 0.23 2.62 16 12 C -0.09 -2.87 7.39 22.39 0.17 -2.70 16 13 C -0.17 -6.64 9.98 22.37 0.22 -6.42 16 14 C 0.10 4.80 6.65 22.59 0.15 4.95 16 15 O -0.23 -13.11 9.76 -22.98 -0.22 -13.33 16 16 C -0.41 -22.75 9.48 67.91 0.64 -22.10 16 17 H 0.10 5.22 5.20 -2.91 -0.02 5.21 16 18 C -0.02 -1.26 5.49 84.82 0.47 -0.79 16 19 N -0.92 -55.11 13.67 21.61 0.30 -54.81 16 20 Si 1.02 41.53 29.55 68.60 2.03 43.56 16 21 H -0.25 -9.35 7.11 99.48 0.71 -8.64 16 22 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 23 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 24 C -0.21 -8.52 9.16 22.37 0.20 -8.32 16 25 C -0.09 -2.73 9.96 22.39 0.22 -2.51 16 26 H 0.06 0.88 8.11 -2.39 -0.02 0.86 16 27 H 0.05 0.88 8.11 -2.38 -0.02 0.86 16 28 H 0.12 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 30 H 0.16 3.75 5.47 -2.91 -0.02 3.74 16 31 H 0.42 8.88 8.24 -92.71 -0.76 8.12 16 32 H 0.14 3.72 6.63 -2.91 -0.02 3.70 16 33 H 0.12 4.65 8.06 -2.91 -0.02 4.62 16 34 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 35 H 0.13 5.08 5.63 -2.91 -0.02 5.07 16 36 H 0.14 3.59 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -66.70 329.48 3.17 -63.53 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: 0.39 Total: 24.87 kcal Atomic # 6 Polarization: -29.04 SS G_CDS: 5.39 Total: -23.66 kcal Atomic # 7 Polarization: -83.28 SS G_CDS: -3.44 Total: -86.72 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -1.11 Total: -20.91 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -0.08 Total: -0.67 kcal Total: -66.70 3.17 -63.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212607260.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.307 kcal (2) G-P(sol) polarization free energy of solvation -66.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds