Wall clock time and date at job start Tue Mar 31 2020 12:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99956 * 2 1 4 4 H 1.48501 * 109.47108 * 264.89287 * 3 2 1 5 5 H 1.48497 * 109.47199 * 24.89175 * 3 2 1 6 6 H 1.48500 * 109.47415 * 144.89770 * 3 2 1 7 7 C 1.37875 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99934 * 3.99814 * 7 2 1 9 9 C 1.50697 * 120.00102 * 183.71734 * 7 2 1 10 10 H 1.09003 * 109.47396 * 24.81120 * 9 7 2 11 11 O 1.42905 * 109.46977 * 144.80578 * 9 7 2 12 12 C 1.42905 * 114.00101 * 269.99934 * 11 9 7 13 13 H 1.08997 * 109.46972 * 300.00063 * 12 11 9 14 14 Cl 1.80303 * 109.46879 * 60.00110 * 12 11 9 15 15 C 1.50695 * 109.47164 * 180.02562 * 12 11 9 16 16 C 1.38275 * 119.98553 * 329.72823 * 15 12 11 17 17 C 1.38224 * 120.04971 * 179.72569 * 16 15 12 18 18 C 1.38223 * 120.02206 * 0.54601 * 17 16 15 19 19 C 1.38434 * 119.97773 * 359.72809 * 18 17 16 20 20 F 1.35102 * 120.02936 * 180.02562 * 19 18 17 21 21 C 1.38171 * 119.98729 * 150.00384 * 15 12 11 22 22 C 1.50693 * 109.47412 * 264.80688 * 9 7 2 23 23 C 1.38242 * 120.00157 * 278.53714 * 22 9 7 24 24 C 1.38234 * 119.99908 * 179.78362 * 23 22 9 25 25 C 1.38227 * 120.00283 * 0.45055 * 24 23 22 26 26 C 1.38240 * 119.99867 * 359.80475 * 25 24 23 27 27 C 1.38233 * 120.00114 * 98.81211 * 22 9 7 28 28 H 0.97000 * 119.99693 * 0.02562 * 1 2 3 29 29 H 1.07997 * 119.97543 * 359.97438 * 16 15 12 30 30 H 1.07996 * 119.99061 * 180.27833 * 17 16 15 31 31 H 1.08006 * 120.01437 * 179.70315 * 18 17 16 32 32 H 1.07998 * 120.01271 * 0.02562 * 21 15 12 33 33 H 1.08000 * 119.99606 * 0.02562 * 23 22 9 34 34 H 1.08007 * 119.99863 * 180.27171 * 24 23 22 35 35 H 1.08004 * 120.00399 * 179.83451 * 25 24 23 36 36 H 1.08000 * 119.99922 * 180.02562 * 26 25 24 37 37 H 1.07997 * 120.00459 * 359.97438 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6046 1.9841 -1.3945 5 1 1.3968 2.6814 0.5893 6 1 3.4886 1.4738 0.8051 7 6 2.0045 -1.1940 0.0005 8 1 1.4665 -2.1282 -0.0643 9 6 3.5091 -1.1954 0.0851 10 1 3.8469 -0.2771 0.5657 11 8 3.9421 -2.3211 0.8516 12 6 4.0576 -2.0611 2.2520 13 1 4.7822 -1.2632 2.4148 14 17 2.4536 -1.5585 2.9043 15 6 4.5189 -3.3097 2.9584 16 6 4.1791 -4.5528 2.4572 17 6 4.6062 -5.6990 3.1009 18 6 5.3642 -5.6037 4.2528 19 6 5.7002 -4.3596 4.7587 20 9 6.4415 -4.2652 5.8843 21 6 5.2764 -3.2120 4.1098 22 6 4.0903 -1.2791 -1.3027 23 6 4.1879 -2.5027 -1.9385 24 6 4.7169 -2.5789 -3.2134 25 6 5.1568 -1.4329 -3.8488 26 6 5.0640 -0.2099 -3.2109 27 6 4.5310 -0.1331 -1.9378 28 1 -0.4850 0.8401 -0.0004 29 1 3.5828 -4.6282 1.5599 30 1 4.3440 -6.6694 2.7061 31 1 5.6938 -6.4994 4.7584 32 1 5.5376 -2.2409 4.5038 33 1 3.8473 -3.3986 -1.4407 34 1 4.7892 -3.5343 -3.7118 35 1 5.5726 -1.4927 -4.8438 36 1 5.4074 0.6856 -3.7075 37 1 4.4584 0.8223 -1.4396 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222834236.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:01 Heat of formation + Delta-G solvation = -42.531322 kcal Electronic energy + Delta-G solvation = -23928.532949 eV Core-core repulsion = 20190.321462 eV Total energy + Delta-G solvation = -3738.211487 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.072 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.90832 -39.28736 -38.70789 -36.98063 -34.81480 -33.03557 -31.87821 -30.97731 -30.36948 -30.24502 -27.25837 -25.69321 -23.02218 -22.66050 -22.05042 -21.30300 -20.31281 -17.56511 -17.25599 -16.70221 -16.20270 -16.11687 -15.76638 -15.55941 -15.12104 -14.90202 -14.39202 -14.10439 -13.90794 -13.56332 -13.06908 -12.93131 -12.67760 -12.63321 -12.45575 -12.12649 -11.79288 -11.68271 -11.37703 -11.17962 -10.90367 -10.86606 -10.44414 -9.97631 -9.84331 -9.73010 -9.63288 -9.05538 -8.90876 -8.68026 -8.64160 -8.31372 -7.91044 -6.21262 -4.18165 1.03018 1.20035 1.98671 2.03625 2.86027 3.14792 3.18321 3.25623 3.64809 3.89915 4.25420 4.34244 4.47592 4.70035 4.79978 4.98653 5.12658 5.25622 5.33444 5.35898 5.45081 5.47286 5.62201 5.72568 5.84195 6.02557 6.06610 6.11761 6.19497 6.32194 6.42511 6.49921 6.61430 6.67635 6.86765 7.04256 7.11570 7.21911 7.37173 7.63430 7.72169 8.35928 8.89158 9.38632 10.91155 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.012901 B = 0.004941 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.881468 B = 5665.083331 C = 6932.988717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.091 3.909 3 Si 0.851 3.149 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.504 4.504 8 H 0.087 0.913 9 C 0.206 3.794 10 H 0.042 0.958 11 O -0.361 6.361 12 C 0.211 3.789 13 H 0.089 0.911 14 Cl -0.163 7.163 15 C -0.058 4.058 16 C -0.083 4.083 17 C -0.096 4.096 18 C -0.150 4.150 19 C 0.090 3.910 20 F -0.142 7.142 21 C -0.136 4.136 22 C -0.038 4.038 23 C -0.098 4.098 24 C -0.124 4.124 25 C -0.145 4.145 26 C -0.121 4.121 27 C -0.132 4.132 28 H 0.266 0.734 29 H 0.144 0.856 30 H 0.135 0.865 31 H 0.133 0.867 32 H 0.136 0.864 33 H 0.122 0.878 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.452 -6.689 3.218 13.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.678 3.322 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.541 4.541 8 H 0.105 0.895 9 C 0.151 3.849 10 H 0.060 0.940 11 O -0.280 6.280 12 C 0.126 3.874 13 H 0.107 0.893 14 Cl -0.138 7.138 15 C -0.059 4.059 16 C -0.101 4.101 17 C -0.114 4.114 18 C -0.168 4.168 19 C 0.071 3.929 20 F -0.121 7.121 21 C -0.155 4.155 22 C -0.039 4.039 23 C -0.116 4.116 24 C -0.142 4.142 25 C -0.163 4.163 26 C -0.139 4.139 27 C -0.151 4.151 28 H 0.076 0.924 29 H 0.162 0.838 30 H 0.152 0.848 31 H 0.151 0.849 32 H 0.154 0.846 33 H 0.140 0.860 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 11.209 -6.689 3.209 13.442 hybrid contribution 0.262 1.392 0.227 1.434 sum 11.471 -5.297 3.436 13.094 Atomic orbital electron populations 1.69852 1.06029 1.27039 1.48683 1.24779 0.94546 0.98173 0.93825 0.87344 0.80551 0.85071 0.79191 1.19219 1.21075 1.18756 1.21036 0.87283 0.95382 1.50428 0.89545 1.19436 0.95416 0.85025 0.85049 0.94046 1.87854 1.86222 1.40021 1.13879 1.23401 0.86674 0.93781 0.83504 0.89349 1.98804 1.35536 1.91982 1.87437 1.19475 0.97104 0.94632 0.94686 1.21227 0.97979 0.90881 1.00043 1.21053 0.96869 0.99117 0.94411 1.21163 1.01278 0.96184 0.98225 1.17487 0.95986 0.94327 0.85068 1.91487 1.74532 1.97116 1.48974 1.20850 1.00150 0.98311 0.96210 1.20279 0.92805 0.92948 0.97882 1.20889 0.98647 0.97836 0.94230 1.21061 0.99952 0.97813 0.95422 1.20894 1.02857 0.93001 0.99580 1.20918 1.00586 0.97322 0.95070 1.20898 1.00368 0.97872 0.95928 0.92361 0.83834 0.84757 0.84890 0.84592 0.86000 0.86945 0.87128 0.87011 0.87380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.47 13.96 55.43 0.77 -24.70 16 2 C 0.09 2.46 5.47 -17.82 -0.10 2.36 16 3 Si 0.85 20.18 24.83 -169.99 -4.22 15.96 16 4 H -0.27 -6.16 6.86 56.52 0.39 -5.77 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.26 -5.84 6.07 56.52 0.34 -5.49 16 7 C -0.50 -13.06 7.16 -34.44 -0.25 -13.30 16 8 H 0.09 2.51 8.06 -52.49 -0.42 2.08 16 9 C 0.21 4.58 1.78 -29.04 -0.05 4.53 16 10 H 0.04 0.94 4.61 -51.93 -0.24 0.70 16 11 O -0.36 -7.22 8.16 -35.23 -0.29 -7.51 16 12 C 0.21 3.76 3.41 36.00 0.12 3.89 16 13 H 0.09 1.45 8.03 -51.93 -0.42 1.03 16 14 Cl -0.16 -3.35 26.45 -51.86 -1.37 -4.72 16 15 C -0.06 -0.89 5.16 -104.64 -0.54 -1.43 16 16 C -0.08 -1.18 9.35 -39.57 -0.37 -1.55 16 17 C -0.10 -1.11 10.04 -39.59 -0.40 -1.50 16 18 C -0.15 -1.69 10.03 -39.51 -0.40 -2.08 16 19 C 0.09 1.16 7.30 -39.42 -0.29 0.87 16 20 F -0.14 -1.84 17.27 2.25 0.04 -1.80 16 21 C -0.14 -1.85 9.68 -39.51 -0.38 -2.23 16 22 C -0.04 -0.80 4.94 -104.63 -0.52 -1.32 16 23 C -0.10 -1.86 9.36 -39.58 -0.37 -2.23 16 24 C -0.12 -2.05 10.05 -39.59 -0.40 -2.45 16 25 C -0.15 -2.30 10.05 -39.58 -0.40 -2.70 16 26 C -0.12 -2.06 10.05 -39.58 -0.40 -2.46 16 27 C -0.13 -2.62 8.94 -39.58 -0.35 -2.98 16 28 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.14 2.15 7.49 -52.49 -0.39 1.75 16 30 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 31 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 32 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 33 H 0.12 2.26 7.74 -52.49 -0.41 1.86 16 34 H 0.11 1.53 8.06 -52.48 -0.42 1.10 16 35 H 0.11 1.42 8.06 -52.48 -0.42 0.99 16 36 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 37 H 0.11 2.14 5.60 -52.49 -0.29 1.85 16 LS Contribution 331.63 15.07 5.00 5.00 Total: -1.00 -28.73 331.63 -9.07 -37.80 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -3.92 Total: 4.56 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: -5.08 Total: -24.59 kcal Atomic # 7 Polarization: -25.47 SS G_CDS: 0.77 Total: -24.70 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -0.29 Total: -7.51 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.22 Total: 15.96 kcal Atomic # 17 Polarization: -3.35 SS G_CDS: -1.37 Total: -4.72 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.73 -9.07 -37.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222834236.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.736 kcal (2) G-P(sol) polarization free energy of solvation -28.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds