Wall clock time and date at job start Tue Mar 31 2020 12:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99956 * 2 1 4 4 H 1.48501 * 109.47108 * 264.89287 * 3 2 1 5 5 H 1.48497 * 109.47199 * 24.89175 * 3 2 1 6 6 H 1.48500 * 109.47415 * 144.89770 * 3 2 1 7 7 C 1.37875 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99934 * 3.99814 * 7 2 1 9 9 C 1.50697 * 120.00102 * 183.71734 * 7 2 1 10 10 H 1.09003 * 109.47396 * 24.81120 * 9 7 2 11 11 O 1.42905 * 109.46977 * 144.80578 * 9 7 2 12 12 C 1.42905 * 114.00101 * 269.99934 * 11 9 7 13 13 H 1.08997 * 109.46972 * 300.00063 * 12 11 9 14 14 Cl 1.80303 * 109.46879 * 60.00110 * 12 11 9 15 15 C 1.50695 * 109.47164 * 180.02562 * 12 11 9 16 16 C 1.38275 * 119.98553 * 329.72823 * 15 12 11 17 17 C 1.38224 * 120.04971 * 179.72569 * 16 15 12 18 18 C 1.38223 * 120.02206 * 0.54601 * 17 16 15 19 19 C 1.38434 * 119.97773 * 359.72809 * 18 17 16 20 20 F 1.35102 * 120.02936 * 180.02562 * 19 18 17 21 21 C 1.38171 * 119.98729 * 150.00384 * 15 12 11 22 22 C 1.50693 * 109.47412 * 264.80688 * 9 7 2 23 23 C 1.38242 * 120.00157 * 278.53714 * 22 9 7 24 24 C 1.38234 * 119.99908 * 179.78362 * 23 22 9 25 25 C 1.38227 * 120.00283 * 0.45055 * 24 23 22 26 26 C 1.38240 * 119.99867 * 359.80475 * 25 24 23 27 27 C 1.38233 * 120.00114 * 98.81211 * 22 9 7 28 28 H 0.97000 * 119.99693 * 0.02562 * 1 2 3 29 29 H 1.07997 * 119.97543 * 359.97438 * 16 15 12 30 30 H 1.07996 * 119.99061 * 180.27833 * 17 16 15 31 31 H 1.08006 * 120.01437 * 179.70315 * 18 17 16 32 32 H 1.07998 * 120.01271 * 0.02562 * 21 15 12 33 33 H 1.08000 * 119.99606 * 0.02562 * 23 22 9 34 34 H 1.08007 * 119.99863 * 180.27171 * 24 23 22 35 35 H 1.08004 * 120.00399 * 179.83451 * 25 24 23 36 36 H 1.08000 * 119.99922 * 180.02562 * 26 25 24 37 37 H 1.07997 * 120.00459 * 359.97438 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6046 1.9841 -1.3945 5 1 1.3968 2.6814 0.5893 6 1 3.4886 1.4738 0.8051 7 6 2.0045 -1.1940 0.0005 8 1 1.4665 -2.1282 -0.0643 9 6 3.5091 -1.1954 0.0851 10 1 3.8469 -0.2771 0.5657 11 8 3.9421 -2.3211 0.8516 12 6 4.0576 -2.0611 2.2520 13 1 4.7822 -1.2632 2.4148 14 17 2.4536 -1.5585 2.9043 15 6 4.5189 -3.3097 2.9584 16 6 4.1791 -4.5528 2.4572 17 6 4.6062 -5.6990 3.1009 18 6 5.3642 -5.6037 4.2528 19 6 5.7002 -4.3596 4.7587 20 9 6.4415 -4.2652 5.8843 21 6 5.2764 -3.2120 4.1098 22 6 4.0903 -1.2791 -1.3027 23 6 4.1879 -2.5027 -1.9385 24 6 4.7169 -2.5789 -3.2134 25 6 5.1568 -1.4329 -3.8488 26 6 5.0640 -0.2099 -3.2109 27 6 4.5310 -0.1331 -1.9378 28 1 -0.4850 0.8401 -0.0004 29 1 3.5828 -4.6282 1.5599 30 1 4.3440 -6.6694 2.7061 31 1 5.6938 -6.4994 4.7584 32 1 5.5376 -2.2409 4.5038 33 1 3.8473 -3.3986 -1.4407 34 1 4.7892 -3.5343 -3.7118 35 1 5.5726 -1.4927 -4.8438 36 1 5.4074 0.6856 -3.7075 37 1 4.4584 0.8223 -1.4396 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222834236.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:00 Heat of formation + Delta-G solvation = -56.754381 kcal Electronic energy + Delta-G solvation = -23929.149707 eV Core-core repulsion = 20190.321462 eV Total energy + Delta-G solvation = -3738.828245 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.072 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.91728 -40.55843 -40.01115 -38.44876 -36.37108 -34.88283 -33.29567 -32.32641 -31.66704 -31.40137 -28.98896 -27.04536 -24.65727 -23.74583 -23.42198 -22.47349 -21.85414 -19.26862 -18.63560 -18.07892 -17.53538 -17.17158 -17.08383 -16.76456 -16.56277 -16.28879 -15.94666 -15.45797 -15.18709 -14.80333 -14.66765 -14.23695 -14.15847 -14.02788 -13.93471 -13.43921 -13.30785 -12.97755 -12.78061 -12.62920 -12.42885 -12.22408 -11.86176 -11.82788 -11.53899 -11.44129 -11.22375 -10.73890 -10.59613 -10.03803 -9.71059 -9.69979 -9.41966 -8.29067 -6.28213 -0.05038 0.17416 0.58636 0.64205 1.24804 1.26910 1.33425 1.47034 2.27735 2.40758 2.66864 2.99359 3.16113 3.27075 3.49242 3.70756 3.95895 4.06337 4.10052 4.20317 4.21417 4.28064 4.35866 4.38205 4.58998 4.73885 4.82551 4.86191 5.01702 5.07747 5.18681 5.27289 5.32765 5.38168 5.43909 5.67775 5.71924 5.78992 5.86041 6.00429 6.24945 6.39029 6.74164 7.32294 8.87368 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.012901 B = 0.004941 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.881468 B = 5665.083331 C = 6932.988717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.044 3.956 3 Si 0.895 3.105 4 H -0.254 1.254 5 H -0.290 1.290 6 H -0.243 1.243 7 C -0.490 4.490 8 H 0.040 0.960 9 C 0.216 3.784 10 H 0.037 0.963 11 O -0.362 6.362 12 C 0.210 3.790 13 H 0.103 0.897 14 Cl -0.195 7.195 15 C -0.077 4.077 16 C -0.098 4.098 17 C -0.086 4.086 18 C -0.136 4.136 19 C 0.084 3.916 20 F -0.142 7.142 21 C -0.139 4.139 22 C -0.070 4.070 23 C -0.115 4.115 24 C -0.121 4.121 25 C -0.134 4.134 26 C -0.122 4.122 27 C -0.153 4.153 28 H 0.264 0.736 29 H 0.127 0.873 30 H 0.167 0.833 31 H 0.166 0.834 32 H 0.146 0.854 33 H 0.114 0.886 34 H 0.145 0.855 35 H 0.152 0.848 36 H 0.143 0.857 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.400 -7.634 2.235 16.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.155 4.155 3 Si 0.721 3.279 4 H -0.178 1.178 5 H -0.216 1.216 6 H -0.167 1.167 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.160 3.840 10 H 0.054 0.946 11 O -0.281 6.281 12 C 0.126 3.874 13 H 0.120 0.880 14 Cl -0.169 7.169 15 C -0.078 4.078 16 C -0.117 4.117 17 C -0.104 4.104 18 C -0.154 4.154 19 C 0.065 3.935 20 F -0.121 7.121 21 C -0.158 4.158 22 C -0.071 4.071 23 C -0.133 4.133 24 C -0.139 4.139 25 C -0.152 4.152 26 C -0.140 4.140 27 C -0.171 4.171 28 H 0.074 0.926 29 H 0.145 0.855 30 H 0.184 0.816 31 H 0.184 0.816 32 H 0.163 0.837 33 H 0.132 0.868 34 H 0.163 0.837 35 H 0.170 0.830 36 H 0.161 0.839 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 14.194 -7.647 2.228 16.276 hybrid contribution -0.533 1.494 0.506 1.665 sum 13.661 -6.153 2.734 15.230 Atomic orbital electron populations 1.69996 1.07766 1.27602 1.51744 1.25382 0.94994 1.01279 0.93883 0.86607 0.80068 0.81130 0.80140 1.17814 1.21646 1.16695 1.21008 0.89398 0.93300 1.49021 0.94150 1.19173 0.93041 0.85311 0.86512 0.94564 1.87843 1.85846 1.39285 1.15111 1.23764 0.85235 0.95976 0.82445 0.87980 1.98799 1.37998 1.92385 1.87739 1.19289 0.99029 0.93707 0.95760 1.21251 0.98534 0.91757 1.00113 1.21345 0.95730 0.99394 0.93946 1.21537 0.99606 0.96729 0.97534 1.17613 0.96093 0.94699 0.85102 1.91491 1.74516 1.97148 1.48928 1.20915 0.99809 0.99418 0.95627 1.20224 0.95303 0.94456 0.97070 1.20978 0.99612 0.96977 0.95710 1.21440 0.98359 0.99863 0.94200 1.21397 1.00897 0.91963 1.00909 1.21321 0.99379 0.99290 0.93967 1.21043 1.01525 0.97143 0.97410 0.92646 0.85509 0.81559 0.81606 0.83663 0.86822 0.83701 0.83018 0.83915 0.87883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.62 13.96 21.45 0.30 -56.32 16 2 C 0.04 2.47 5.47 84.65 0.46 2.93 16 3 Si 0.90 42.18 24.83 68.60 1.70 43.89 16 4 H -0.25 -11.30 6.86 99.48 0.68 -10.62 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 6 H -0.24 -10.51 6.07 99.48 0.60 -9.91 16 7 C -0.49 -26.58 7.16 25.60 0.18 -26.40 16 8 H 0.04 2.51 8.06 -2.91 -0.02 2.49 16 9 C 0.22 9.83 1.78 29.10 0.05 9.88 16 10 H 0.04 1.68 4.61 -2.39 -0.01 1.67 16 11 O -0.36 -14.99 8.16 -148.98 -1.22 -16.21 16 12 C 0.21 7.68 3.41 71.23 0.24 7.92 16 13 H 0.10 3.39 8.03 -2.39 -0.02 3.37 16 14 Cl -0.19 -8.32 26.45 -2.72 -0.07 -8.39 16 15 C -0.08 -2.36 5.16 -19.87 -0.10 -2.46 16 16 C -0.10 -2.77 9.35 22.28 0.21 -2.56 16 17 C -0.09 -1.78 10.04 22.26 0.22 -1.56 16 18 C -0.14 -2.64 10.03 22.31 0.22 -2.41 16 19 C 0.08 1.99 7.30 22.38 0.16 2.15 16 20 F -0.14 -3.37 17.27 44.97 0.78 -2.60 16 21 C -0.14 -3.65 9.68 22.31 0.22 -3.43 16 22 C -0.07 -2.93 4.94 -19.87 -0.10 -3.03 16 23 C -0.11 -4.31 9.36 22.27 0.21 -4.11 16 24 C -0.12 -3.63 10.05 22.27 0.22 -3.41 16 25 C -0.13 -3.68 10.05 22.27 0.22 -3.45 16 26 C -0.12 -3.75 10.05 22.27 0.22 -3.53 16 27 C -0.15 -5.86 8.94 22.27 0.20 -5.66 16 28 H 0.26 15.26 8.31 -92.71 -0.77 14.48 16 29 H 0.13 3.96 7.49 -2.91 -0.02 3.93 16 30 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 31 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 32 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 33 H 0.11 4.33 7.74 -2.91 -0.02 4.31 16 34 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 35 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 36 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 37 H 0.10 3.96 5.60 -2.91 -0.02 3.94 16 Total: -1.00 -65.93 331.63 5.31 -60.62 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 0.97 Total: 18.14 kcal Atomic # 6 Polarization: -41.98 SS G_CDS: 2.85 Total: -39.13 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: 0.30 Total: -56.32 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -1.22 Total: -16.21 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.78 Total: -2.60 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 1.70 Total: 43.89 kcal Atomic # 17 Polarization: -8.32 SS G_CDS: -0.07 Total: -8.39 kcal Total: -65.93 5.31 -60.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222834236.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.867 kcal (2) G-P(sol) polarization free energy of solvation -65.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds