Wall clock time and date at job start Tue Mar 31 2020 12:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99825 * 2 1 4 4 H 1.48496 * 109.46822 * 239.99629 * 3 2 1 5 5 H 1.48491 * 109.47421 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47129 * 119.99898 * 3 2 1 7 7 C 1.37875 * 120.00142 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00289 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99725 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.46815 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47051 * 59.99266 * 9 7 2 12 12 C 1.42902 * 113.99968 * 90.00480 * 11 9 7 13 13 H 1.09001 * 109.46863 * 299.99491 * 12 11 9 14 14 Cl 1.80303 * 109.47227 * 59.99274 * 12 11 9 15 15 C 1.50699 * 109.47291 * 179.97438 * 12 11 9 16 16 C 1.38270 * 119.98769 * 329.72768 * 15 12 11 17 17 C 1.38214 * 120.05404 * 179.72490 * 16 15 12 18 18 C 1.38227 * 120.02355 * 0.54174 * 17 16 15 19 19 C 1.38441 * 119.97297 * 359.73362 * 18 17 16 20 20 F 1.35093 * 120.02374 * 180.02562 * 19 18 17 21 21 C 1.38170 * 119.98956 * 149.99367 * 15 12 11 22 22 C 1.50696 * 109.46926 * 299.98967 * 9 7 2 23 23 C 1.38230 * 120.00328 * 265.00387 * 22 9 7 24 24 C 1.38235 * 120.00326 * 179.97438 * 23 22 9 25 25 C 1.38234 * 119.99814 * 359.97438 * 24 23 22 26 26 C 1.38240 * 120.00061 * 0.07178 * 25 24 23 27 27 C 1.38234 * 119.99689 * 359.90912 * 26 25 24 28 28 H 0.97004 * 119.99684 * 0.02562 * 1 2 3 29 29 H 1.08007 * 119.97057 * 359.97312 * 16 15 12 30 30 H 1.07998 * 119.99434 * 180.27363 * 17 16 15 31 31 H 1.07998 * 120.01040 * 179.70427 * 18 17 16 32 32 H 1.08004 * 120.01212 * 0.02562 * 21 15 12 33 33 H 1.08000 * 120.00376 * 0.02562 * 23 22 9 34 34 H 1.08000 * 120.00616 * 179.72578 * 24 23 22 35 35 H 1.08001 * 120.00299 * 179.97438 * 25 24 23 36 36 H 1.07997 * 119.99852 * 179.97438 * 26 25 24 37 37 H 1.07999 * 119.99751 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 1.9594 -3.3276 0.0005 11 8 0.4298 -2.5750 -1.1664 12 6 1.0750 -3.1714 -2.2934 13 1 1.9568 -2.5878 -2.5581 14 17 1.5704 -4.8552 -1.8809 15 6 0.1222 -3.2002 -3.4607 16 6 -1.2386 -3.3057 -3.2395 17 6 -2.1141 -3.3265 -4.3089 18 6 -1.6292 -3.2531 -5.6012 19 6 -0.2665 -3.1531 -5.8240 20 9 0.2084 -3.0807 -7.0867 21 6 0.6092 -3.1266 -4.7516 22 6 0.3844 -2.5787 1.2308 23 6 0.8470 -3.2254 2.3615 24 6 0.0522 -3.2979 3.4902 25 6 -1.2050 -2.7233 3.4883 26 6 -1.6681 -2.0775 2.3572 27 6 -0.8731 -2.0046 1.2287 28 1 -0.4850 0.8401 -0.0004 29 1 -1.6180 -3.3680 -2.2302 30 1 -3.1771 -3.4046 -4.1349 31 1 -2.3132 -3.2742 -6.4367 32 1 1.6725 -3.0488 -4.9243 33 1 1.8297 -3.6733 2.3635 34 1 0.4119 -3.8070 4.3722 35 1 -1.8262 -2.7803 4.3700 36 1 -2.6505 -1.6289 2.3556 37 1 -1.2347 -1.4997 0.3451 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222834238.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:05 Heat of formation + Delta-G solvation = -51.663110 kcal Electronic energy + Delta-G solvation = -24156.872674 eV Core-core repulsion = 20418.265203 eV Total energy + Delta-G solvation = -3738.607471 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.072 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.90306 -40.37518 -39.80580 -38.18923 -36.46335 -34.81302 -32.99285 -32.01227 -31.38995 -31.20491 -28.68605 -26.91689 -24.70921 -23.72016 -23.05586 -22.38538 -21.85244 -18.82222 -18.53248 -17.79325 -17.31162 -17.12473 -16.88425 -16.73314 -16.48831 -16.14417 -15.95008 -15.23747 -15.05540 -14.72291 -14.46743 -14.14638 -13.93181 -13.79519 -13.28138 -13.23994 -13.15335 -12.87178 -12.80758 -12.60123 -12.28281 -12.18053 -12.02182 -11.71770 -11.59561 -11.44449 -10.93235 -10.72032 -10.26426 -9.99338 -9.67268 -9.40193 -9.16267 -7.93582 -6.36402 -0.01340 0.21003 0.84253 1.01339 1.38665 1.40015 1.42203 1.47348 2.38606 2.56990 2.80204 3.17816 3.34610 3.41800 3.63067 3.83141 4.07762 4.20541 4.27960 4.35819 4.39498 4.41622 4.56939 4.69020 4.78405 4.88361 5.03398 5.09995 5.11014 5.23008 5.36139 5.46694 5.49265 5.62868 5.68431 5.89539 5.90512 6.01667 6.15010 6.27998 6.48295 6.59068 6.88229 7.41523 8.85233 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.012097 B = 0.004968 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.074227 B = 5634.299252 C = 6466.334573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.051 3.949 3 Si 0.940 3.060 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.278 1.278 7 C -0.570 4.570 8 H 0.053 0.947 9 C 0.238 3.762 10 H 0.036 0.964 11 O -0.344 6.344 12 C 0.221 3.779 13 H 0.091 0.909 14 Cl -0.223 7.223 15 C -0.073 4.073 16 C -0.095 4.095 17 C -0.089 4.089 18 C -0.137 4.137 19 C 0.082 3.918 20 F -0.143 7.143 21 C -0.141 4.141 22 C -0.064 4.064 23 C -0.142 4.142 24 C -0.145 4.145 25 C -0.141 4.141 26 C -0.159 4.159 27 C -0.065 4.065 28 H 0.262 0.738 29 H 0.126 0.874 30 H 0.166 0.834 31 H 0.166 0.834 32 H 0.142 0.858 33 H 0.111 0.889 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.121 0.879 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.731 -5.831 -5.308 9.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.154 4.154 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.204 1.204 7 C -0.607 4.607 8 H 0.071 0.929 9 C 0.183 3.817 10 H 0.054 0.946 11 O -0.262 6.262 12 C 0.136 3.864 13 H 0.109 0.891 14 Cl -0.198 7.198 15 C -0.074 4.074 16 C -0.113 4.113 17 C -0.106 4.106 18 C -0.156 4.156 19 C 0.063 3.937 20 F -0.122 7.122 21 C -0.160 4.160 22 C -0.065 4.065 23 C -0.161 4.161 24 C -0.163 4.163 25 C -0.159 4.159 26 C -0.178 4.178 27 C -0.084 4.084 28 H 0.072 0.928 29 H 0.144 0.856 30 H 0.184 0.816 31 H 0.183 0.817 32 H 0.160 0.840 33 H 0.129 0.871 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.139 0.861 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.022 -5.742 -5.318 9.299 hybrid contribution 1.307 1.059 0.001 1.682 sum -3.714 -4.683 -5.317 8.000 Atomic orbital electron populations 1.69972 1.06258 1.26486 1.46036 1.25523 0.95557 1.01287 0.93070 0.85919 0.78830 0.80149 0.78512 1.19873 1.20699 1.20366 1.21590 0.92897 0.91982 1.54247 0.92859 1.18714 0.87633 0.94688 0.80630 0.94611 1.88143 1.41524 1.76037 1.20493 1.23737 0.95426 0.79484 0.87724 0.89130 1.98712 1.92941 1.33169 1.94967 1.19346 0.94682 1.01505 0.91866 1.21227 0.92309 0.97093 1.00688 1.21338 1.01405 0.97362 0.90542 1.21508 0.93168 1.01425 0.99485 1.17619 0.93071 1.04567 0.78490 1.91478 1.89205 1.94029 1.37455 1.20933 1.01104 1.03058 0.90912 1.19986 0.94762 0.96001 0.95740 1.21015 0.99840 1.01156 0.94055 1.21113 0.95116 1.02140 0.97976 1.21235 0.96577 0.99634 0.98427 1.21393 1.00256 1.01664 0.94454 1.21666 0.93399 0.93605 0.99721 0.92782 0.85567 0.81646 0.81651 0.84041 0.87128 0.84616 0.84609 0.86127 0.84152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -43.72 8.53 21.45 0.18 -43.53 16 2 C 0.05 2.61 5.24 84.65 0.44 3.05 16 3 Si 0.94 41.34 29.54 68.60 2.03 43.37 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 6 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.57 -29.46 8.89 25.60 0.23 -29.23 16 8 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 9 C 0.24 11.34 2.38 29.10 0.07 11.41 16 10 H 0.04 1.68 6.37 -2.39 -0.02 1.66 16 11 O -0.34 -15.56 7.39 -148.98 -1.10 -16.67 16 12 C 0.22 8.56 3.51 71.24 0.25 8.81 16 13 H 0.09 3.62 8.09 -2.39 -0.02 3.60 16 14 Cl -0.22 -8.12 27.22 -2.72 -0.07 -8.19 16 15 C -0.07 -2.48 5.16 -19.87 -0.10 -2.58 16 16 C -0.09 -2.96 9.35 22.27 0.21 -2.75 16 17 C -0.09 -2.10 10.04 22.26 0.22 -1.87 16 18 C -0.14 -3.08 10.03 22.32 0.22 -2.85 16 19 C 0.08 2.19 7.30 22.38 0.16 2.35 16 20 F -0.14 -3.80 17.27 44.97 0.78 -3.02 16 21 C -0.14 -4.22 9.68 22.31 0.22 -4.00 16 22 C -0.06 -2.99 4.80 -19.87 -0.10 -3.08 16 23 C -0.14 -5.93 9.68 22.27 0.22 -5.71 16 24 C -0.15 -5.20 10.05 22.27 0.22 -4.98 16 25 C -0.14 -4.90 10.05 22.27 0.22 -4.68 16 26 C -0.16 -6.23 10.05 22.27 0.22 -6.01 16 27 C -0.06 -2.96 7.45 22.27 0.17 -2.80 16 28 H 0.26 13.02 8.31 -92.71 -0.77 12.25 16 29 H 0.13 4.30 7.49 -2.91 -0.02 4.28 16 30 H 0.17 2.79 8.06 -2.91 -0.02 2.76 16 31 H 0.17 2.60 8.06 -2.91 -0.02 2.57 16 32 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 33 H 0.11 4.32 8.06 -2.91 -0.02 4.29 16 34 H 0.14 3.89 8.06 -2.91 -0.02 3.86 16 35 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 36 H 0.12 4.13 8.06 -2.91 -0.02 4.11 16 37 H 0.14 6.98 5.53 -2.91 -0.02 6.96 16 Total: -1.00 -56.25 334.92 5.78 -50.47 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: 1.09 Total: 22.50 kcal Atomic # 6 Polarization: -47.80 SS G_CDS: 2.88 Total: -44.92 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: 0.18 Total: -43.53 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -1.10 Total: -16.67 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.78 Total: -3.02 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Atomic # 17 Polarization: -8.12 SS G_CDS: -0.07 Total: -8.19 kcal Total: -56.25 5.78 -50.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222834238.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.191 kcal (2) G-P(sol) polarization free energy of solvation -56.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds