Wall clock time and date at job start Tue Mar 31 2020 12:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99666 * 2 1 4 4 H 1.48494 * 109.47541 * 267.46611 * 3 2 1 5 5 H 1.48501 * 109.46754 * 27.46931 * 3 2 1 6 6 H 1.48501 * 109.47107 * 147.46421 * 3 2 1 7 7 C 1.37880 * 120.00709 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99573 * 0.19225 * 7 2 1 9 9 C 1.50697 * 120.00130 * 180.19264 * 7 2 1 10 10 H 1.08999 * 109.47267 * 30.59799 * 9 7 2 11 11 O 1.42901 * 109.46851 * 150.60208 * 9 7 2 12 12 C 1.35943 * 116.99651 * 273.79094 * 11 9 7 13 13 C 1.38723 * 120.03292 * 5.83127 * 12 11 9 14 14 C 1.38128 * 119.97284 * 179.69694 * 13 12 11 15 15 C 1.38482 * 120.02578 * 0.57809 * 14 13 12 16 16 F 1.35104 * 119.96704 * 179.73944 * 15 14 13 17 17 C 1.38434 * 120.06253 * 359.72413 * 15 14 13 18 18 C 1.38169 * 120.02642 * 359.97217 * 17 15 14 19 19 C 1.50703 * 120.01147 * 180.02562 * 18 17 15 20 20 Cl 1.80299 * 109.47273 * 270.02370 * 19 18 17 21 21 C 1.50700 * 109.46859 * 270.59645 * 9 7 2 22 22 C 1.38237 * 120.00507 * 278.53515 * 21 9 7 23 23 C 1.38231 * 120.00069 * 179.81032 * 22 21 9 24 24 C 1.38227 * 120.00427 * 0.39904 * 23 22 21 25 25 C 1.38241 * 119.99969 * 359.85780 * 24 23 22 26 26 C 1.38235 * 119.99435 * 359.95390 * 25 24 23 27 27 H 0.96996 * 120.00003 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.01336 * 359.97438 * 13 12 11 29 29 H 1.07997 * 119.99379 * 180.27855 * 14 13 12 30 30 H 1.08000 * 119.98671 * 180.02562 * 17 15 14 31 31 H 1.08998 * 109.47448 * 30.03041 * 19 18 17 32 32 H 1.09008 * 109.46973 * 150.02682 * 19 18 17 33 33 H 1.08002 * 119.99614 * 359.97438 * 22 21 9 34 34 H 1.08005 * 119.99493 * 180.23433 * 23 22 21 35 35 H 1.07997 * 120.00625 * 179.83187 * 24 23 22 36 36 H 1.07992 * 120.00310 * 179.97438 * 25 24 23 37 37 H 1.08007 * 119.99383 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.5502 2.0157 -1.3986 5 1 1.4206 2.6675 0.6458 6 1 3.5188 1.4564 0.7530 7 6 2.0047 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0041 9 6 3.5116 -1.1938 0.0039 10 1 3.8734 -0.3104 0.5299 11 8 3.9861 -2.3690 0.6641 12 6 4.1123 -2.3087 2.0163 13 6 3.6733 -1.1876 2.7053 14 6 3.7964 -1.1303 4.0799 15 6 4.3688 -2.1864 4.7690 16 9 4.4934 -2.1268 6.1130 17 6 4.8131 -3.3031 4.0821 18 6 4.6854 -3.3657 2.7077 19 6 5.1686 -4.5818 1.9603 20 17 6.8932 -4.3510 1.4879 21 6 4.0180 -1.1760 -1.4154 22 6 4.0831 -2.3508 -2.1410 23 6 4.5440 -2.3337 -3.4441 24 6 4.9475 -1.1432 -4.0190 25 6 4.8874 0.0309 -3.2918 26 6 4.4229 0.0144 -1.9899 27 1 -0.4850 0.8400 0.0004 28 1 3.2313 -0.3618 2.1676 29 1 3.4506 -0.2596 4.6171 30 1 5.2589 -4.1262 4.6207 31 1 5.0815 -5.4599 2.6001 32 1 4.5625 -4.7228 1.0653 33 1 3.7714 -3.2816 -1.6905 34 1 4.5912 -3.2511 -4.0122 35 1 5.3100 -1.1303 -5.0362 36 1 5.2030 0.9610 -3.7407 37 1 4.3763 0.9316 -1.4216 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222864769.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:40 Heat of formation + Delta-G solvation = -56.567402 kcal Electronic energy + Delta-G solvation = -24271.360234 eV Core-core repulsion = 20532.540098 eV Total energy + Delta-G solvation = -3738.820137 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.072 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.79868 -41.34568 -39.95863 -38.17266 -36.82672 -35.13561 -33.57528 -32.88559 -31.73783 -30.47831 -29.21093 -27.68370 -25.25749 -23.69219 -23.48594 -22.57056 -21.72668 -19.41541 -18.97293 -18.29451 -18.00222 -17.33991 -16.82837 -16.56868 -16.09353 -15.90082 -15.59514 -15.37894 -15.14120 -14.91301 -14.84678 -14.67602 -14.56520 -14.22393 -13.82470 -13.68300 -13.56659 -13.36292 -12.99297 -12.66564 -12.48045 -12.28174 -11.95408 -11.90056 -11.56093 -11.37027 -11.26328 -11.24356 -10.93368 -10.08817 -9.73468 -9.50629 -8.97531 -8.46852 -6.54874 -0.05390 0.24920 0.53611 0.59753 1.19118 1.22275 1.29459 1.51593 2.14372 2.36021 2.63849 2.85046 3.06579 3.21029 3.54702 3.69772 4.00811 4.02237 4.10424 4.15990 4.23130 4.30423 4.32774 4.37787 4.48031 4.69007 4.76799 4.81218 4.82328 5.05119 5.09586 5.16343 5.22865 5.25808 5.34675 5.63515 5.67954 5.70377 5.83006 6.01415 6.20521 6.41896 6.62401 7.11628 8.68730 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.010783 B = 0.006082 C = 0.004324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.077284 B = 4602.464334 C = 6474.163611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.040 3.960 3 Si 0.902 3.098 4 H -0.249 1.249 5 H -0.280 1.280 6 H -0.239 1.239 7 C -0.527 4.527 8 H 0.043 0.957 9 C 0.218 3.782 10 H 0.047 0.953 11 O -0.308 6.308 12 C 0.148 3.852 13 C -0.193 4.193 14 C -0.106 4.106 15 C 0.040 3.960 16 F -0.143 7.143 17 C -0.086 4.086 18 C -0.131 4.131 19 C 0.030 3.970 20 Cl -0.192 7.192 21 C -0.073 4.073 22 C -0.113 4.113 23 C -0.120 4.120 24 C -0.131 4.131 25 C -0.121 4.121 26 C -0.153 4.153 27 H 0.272 0.728 28 H 0.126 0.874 29 H 0.149 0.851 30 H 0.173 0.827 31 H 0.136 0.864 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.146 0.854 35 H 0.154 0.846 36 H 0.145 0.855 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.222 -4.558 1.355 13.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.161 4.161 3 Si 0.726 3.274 4 H -0.173 1.173 5 H -0.206 1.206 6 H -0.163 1.163 7 C -0.564 4.564 8 H 0.061 0.939 9 C 0.163 3.837 10 H 0.065 0.935 11 O -0.221 6.221 12 C 0.101 3.899 13 C -0.212 4.212 14 C -0.125 4.125 15 C 0.021 3.979 16 F -0.122 7.122 17 C -0.105 4.105 18 C -0.132 4.132 19 C -0.032 4.032 20 Cl -0.165 7.165 21 C -0.073 4.073 22 C -0.131 4.131 23 C -0.138 4.138 24 C -0.149 4.149 25 C -0.139 4.139 26 C -0.171 4.171 27 H 0.082 0.918 28 H 0.144 0.856 29 H 0.167 0.833 30 H 0.190 0.810 31 H 0.154 0.846 32 H 0.119 0.881 33 H 0.132 0.868 34 H 0.164 0.836 35 H 0.172 0.828 36 H 0.163 0.837 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 12.220 -4.592 1.211 13.111 hybrid contribution -0.674 1.303 0.361 1.511 sum 11.546 -3.289 1.572 12.108 Atomic orbital electron populations 1.69979 1.07850 1.28515 1.49904 1.25569 0.95322 1.01982 0.93248 0.86532 0.79934 0.80176 0.80759 1.17312 1.20593 1.16334 1.21216 0.89556 0.93828 1.51831 0.93903 1.19354 0.92665 0.84012 0.87654 0.93528 1.85938 1.79894 1.40308 1.15949 1.19139 0.93149 0.93797 0.83821 1.21329 1.04880 0.99943 0.95000 1.21139 0.98670 0.99162 0.93564 1.17430 1.06181 0.97053 0.77244 1.91463 1.94578 1.96799 1.29333 1.20995 0.99021 0.98010 0.92439 1.19017 1.04867 0.96328 0.93034 1.23013 0.81890 0.96328 1.01975 1.98717 1.25758 1.98157 1.93896 1.20126 0.96176 0.94655 0.96379 1.20976 0.99625 0.97437 0.95098 1.21449 0.98488 0.99527 0.94319 1.21424 1.00556 0.91960 1.00932 1.21331 0.99458 0.99837 0.93264 1.21057 1.01832 0.96697 0.97536 0.91846 0.85614 0.83282 0.80976 0.84622 0.88149 0.86825 0.83578 0.82833 0.83704 0.87673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.51 13.96 21.45 0.30 -54.21 16 2 C 0.04 2.18 5.47 84.66 0.46 2.64 16 3 Si 0.90 40.28 23.61 68.60 1.62 41.90 16 4 H -0.25 -10.57 6.76 99.48 0.67 -9.90 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.24 -9.79 5.89 99.48 0.59 -9.21 16 7 C -0.53 -28.45 8.39 25.60 0.21 -28.23 16 8 H 0.04 2.64 8.06 -2.91 -0.02 2.61 16 9 C 0.22 9.96 1.54 29.10 0.04 10.00 16 10 H 0.05 2.14 3.36 -2.39 -0.01 2.13 16 11 O -0.31 -13.01 8.10 -92.91 -0.75 -13.76 16 12 C 0.15 5.66 6.58 22.49 0.15 5.81 16 13 C -0.19 -7.46 8.73 22.36 0.20 -7.27 16 14 C -0.11 -3.47 10.02 22.30 0.22 -3.24 16 15 C 0.04 1.18 7.30 22.37 0.16 1.35 16 16 F -0.14 -4.02 17.27 44.97 0.78 -3.25 16 17 C -0.09 -2.27 9.68 22.30 0.22 -2.05 16 18 C -0.13 -3.98 5.27 -19.77 -0.10 -4.08 16 19 C 0.03 0.75 6.56 71.24 0.47 1.21 16 20 Cl -0.19 -5.16 29.13 -2.72 -0.08 -5.24 16 21 C -0.07 -3.07 4.89 -19.87 -0.10 -3.17 16 22 C -0.11 -4.31 9.36 22.27 0.21 -4.10 16 23 C -0.12 -3.65 10.05 22.27 0.22 -3.43 16 24 C -0.13 -3.62 10.05 22.27 0.22 -3.40 16 25 C -0.12 -3.75 10.05 22.27 0.22 -3.52 16 26 C -0.15 -5.88 8.62 22.27 0.19 -5.69 16 27 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 28 H 0.13 5.41 4.75 -2.91 -0.01 5.40 16 29 H 0.15 4.21 8.06 -2.91 -0.02 4.19 16 30 H 0.17 3.27 8.06 -2.91 -0.02 3.25 16 31 H 0.14 2.35 8.09 -2.39 -0.02 2.33 16 32 H 0.10 2.72 7.53 -2.38 -0.02 2.70 16 33 H 0.11 4.36 7.73 -2.91 -0.02 4.34 16 34 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 35 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 36 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 37 H 0.11 4.01 5.27 -2.91 -0.02 3.99 16 Total: -1.00 -63.27 327.73 5.83 -57.45 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: 0.96 Total: 24.29 kcal Atomic # 6 Polarization: -50.17 SS G_CDS: 3.01 Total: -47.17 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: 0.30 Total: -54.21 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -0.75 Total: -13.76 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.78 Total: -3.25 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 1.62 Total: 41.90 kcal Atomic # 17 Polarization: -5.16 SS G_CDS: -0.08 Total: -5.24 kcal Total: -63.27 5.83 -57.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222864769.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.878 kcal (2) G-P(sol) polarization free energy of solvation -63.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds