Wall clock time and date at job start Tue Mar 31 2020 12:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00316 * 2 1 4 4 H 1.48502 * 109.47400 * 271.52988 * 3 2 1 5 5 H 1.48506 * 109.47235 * 31.52932 * 3 2 1 6 6 H 1.48500 * 109.47449 * 151.53023 * 3 2 1 7 7 C 1.37879 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99667 * 350.71763 * 7 2 1 9 9 C 1.50699 * 120.00332 * 170.71618 * 7 2 1 10 10 H 1.08999 * 109.46993 * 354.89273 * 9 7 2 11 11 O 1.42904 * 109.47103 * 234.89480 * 9 7 2 12 12 C 1.35896 * 117.00086 * 85.76999 * 11 9 7 13 13 C 1.38771 * 120.04151 * 355.01475 * 12 11 9 14 14 C 1.38138 * 119.99514 * 179.97438 * 13 12 11 15 15 C 1.38251 * 120.07850 * 0.02562 * 14 13 12 16 16 C 1.38481 * 120.08578 * 359.95450 * 15 14 13 17 17 F 1.35092 * 119.99795 * 180.02562 * 16 15 14 18 18 C 1.38386 * 120.00426 * 0.29894 * 16 15 14 19 19 C 1.50701 * 120.04313 * 179.72230 * 18 16 15 20 20 Cl 1.80299 * 109.46867 * 89.99729 * 19 18 16 21 21 C 1.50701 * 109.47202 * 114.89220 * 9 7 2 22 22 C 1.38227 * 119.99889 * 81.28231 * 21 9 7 23 23 C 1.38236 * 120.00106 * 179.81136 * 22 21 9 24 24 C 1.38235 * 119.99690 * 0.39393 * 23 22 21 25 25 C 1.38239 * 119.99899 * 359.85733 * 24 23 22 26 26 C 1.38230 * 120.00077 * 359.95855 * 25 24 23 27 27 H 0.96997 * 119.99734 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.00452 * 0.02562 * 13 12 11 29 29 H 1.07999 * 119.95900 * 180.02562 * 14 13 12 30 30 H 1.07997 * 119.95989 * 179.97438 * 15 14 13 31 31 H 1.08992 * 109.47382 * 210.00486 * 19 18 16 32 32 H 1.09002 * 109.46537 * 330.00259 * 19 18 16 33 33 H 1.08002 * 120.00293 * 359.97438 * 22 21 9 34 34 H 1.07994 * 120.00459 * 180.22634 * 23 22 21 35 35 H 1.08001 * 120.00400 * 179.83337 * 24 23 22 36 36 H 1.08006 * 119.99798 * 179.97438 * 25 24 23 37 37 H 1.07995 * 119.99922 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4644 2.0651 -1.3996 5 1 1.4633 2.6431 0.7322 6 1 3.5626 1.4310 0.6674 7 6 2.0045 -1.1941 0.0005 8 1 1.4751 -2.1232 0.1518 9 6 3.4967 -1.2028 -0.2100 10 1 3.8379 -0.1922 -0.4341 11 8 3.8187 -2.0672 -1.3014 12 6 3.7685 -1.5307 -2.5490 13 6 3.3173 -0.2307 -2.7285 14 6 3.2671 0.3139 -3.9970 15 6 3.6656 -0.4348 -5.0888 16 6 4.1168 -1.7323 -4.9134 17 9 4.5062 -2.4621 -5.9814 18 6 4.1635 -2.2831 -3.6448 19 6 4.6486 -3.6971 -3.4536 20 17 6.4319 -3.6900 -3.1881 21 6 4.1776 -1.6973 1.0402 22 6 4.2646 -3.0541 1.2892 23 6 4.8926 -3.5079 2.4341 24 6 5.4263 -2.6043 3.3340 25 6 5.3346 -1.2472 3.0874 26 6 4.7100 -0.7937 1.9407 27 1 -0.4849 0.8400 -0.0004 28 1 3.0061 0.3555 -1.8765 29 1 2.9162 1.3258 -4.1360 30 1 3.6252 -0.0073 -6.0797 31 1 4.1540 -4.1369 -2.5877 32 1 4.4158 -4.2842 -4.3420 33 1 3.8444 -3.7600 0.5881 34 1 4.9639 -4.5681 2.6269 35 1 5.9145 -2.9586 4.2298 36 1 5.7512 -0.5413 3.7907 37 1 4.6387 0.2665 1.7480 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222877428.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:54 Heat of formation + Delta-G solvation = -41.757609 kcal Electronic energy + Delta-G solvation = -24467.253704 eV Core-core repulsion = 20729.075768 eV Total energy + Delta-G solvation = -3738.177936 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.072 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.74086 -39.84500 -38.54642 -36.67469 -35.65036 -33.36893 -32.12134 -31.30594 -30.36149 -29.27120 -27.56113 -26.35078 -23.57031 -22.26278 -22.01748 -21.39424 -20.18890 -17.87477 -17.55489 -16.88255 -16.14886 -15.80198 -15.57062 -15.53612 -14.84630 -14.58167 -14.10775 -14.04541 -13.72868 -13.58245 -13.39475 -13.19897 -13.02727 -12.86629 -12.46197 -12.31691 -12.11881 -11.65074 -11.45651 -11.20976 -11.06284 -10.72637 -10.56382 -10.20777 -10.09634 -10.04998 -9.92107 -9.57921 -9.01289 -8.48047 -8.37208 -8.09294 -7.67601 -6.53174 -4.56449 1.26392 1.67911 1.92552 1.96846 2.73465 2.89091 2.98690 3.05043 3.72277 3.94871 4.00862 4.38819 4.60116 4.78950 4.85167 4.95710 5.25763 5.40428 5.42001 5.47643 5.55085 5.61636 5.64218 5.79439 5.86581 5.94731 6.14347 6.16333 6.22514 6.33764 6.52394 6.59859 6.63449 6.74764 6.98769 7.00878 7.06916 7.10707 7.28109 7.55904 7.91773 8.14210 8.61512 9.05204 10.58064 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.010701 B = 0.006508 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.031669 B = 4301.082915 C = 6221.828754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.088 3.912 3 Si 0.847 3.153 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.253 1.253 7 C -0.531 4.531 8 H 0.089 0.911 9 C 0.208 3.792 10 H 0.048 0.952 11 O -0.308 6.308 12 C 0.220 3.780 13 C -0.217 4.217 14 C -0.045 4.045 15 C -0.211 4.211 16 C 0.148 3.852 17 F -0.138 7.138 18 C -0.200 4.200 19 C 0.032 3.968 20 Cl -0.189 7.189 21 C -0.036 4.036 22 C -0.099 4.099 23 C -0.124 4.124 24 C -0.141 4.141 25 C -0.122 4.122 26 C -0.126 4.126 27 H 0.273 0.727 28 H 0.141 0.859 29 H 0.129 0.871 30 H 0.131 0.869 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.122 0.878 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.480 -1.714 -3.488 9.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.119 4.119 3 Si 0.673 3.327 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.177 1.177 7 C -0.568 4.568 8 H 0.107 0.893 9 C 0.154 3.846 10 H 0.065 0.935 11 O -0.220 6.220 12 C 0.170 3.830 13 C -0.235 4.235 14 C -0.063 4.063 15 C -0.230 4.230 16 C 0.129 3.871 17 F -0.116 7.116 18 C -0.202 4.202 19 C -0.031 4.031 20 Cl -0.162 7.162 21 C -0.037 4.037 22 C -0.117 4.117 23 C -0.142 4.142 24 C -0.159 4.159 25 C -0.140 4.140 26 C -0.145 4.145 27 H 0.083 0.917 28 H 0.159 0.841 29 H 0.147 0.853 30 H 0.149 0.851 31 H 0.128 0.872 32 H 0.114 0.886 33 H 0.140 0.860 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 8.486 -1.846 -3.405 9.328 hybrid contribution 0.125 1.126 -0.007 1.133 sum 8.611 -0.720 -3.412 9.290 Atomic orbital electron populations 1.69866 1.06188 1.27831 1.45847 1.25046 0.94794 0.98711 0.93368 0.87504 0.81313 0.84464 0.79407 1.18683 1.20194 1.17746 1.21159 0.88460 0.96072 1.51072 0.89316 1.19508 0.95694 0.89144 0.80239 0.93479 1.86088 1.81759 1.42298 1.11826 1.18369 0.88975 0.90248 0.85378 1.21749 1.06146 0.96313 0.99290 1.20794 0.94910 0.99262 0.91350 1.20800 1.08367 0.93536 1.00264 1.17068 0.98165 0.89804 0.82109 1.91456 1.88618 1.77254 1.54282 1.18851 1.12710 0.97718 0.90934 1.22732 0.80849 0.94413 1.05071 1.98706 1.20681 1.99109 1.97718 1.19906 0.93713 0.93660 0.96409 1.20922 0.98481 0.95387 0.96882 1.21057 0.99231 0.99004 0.94881 1.20939 1.02031 0.93436 0.99519 1.20939 1.00293 0.95545 0.97215 1.20999 0.98910 0.99498 0.95044 0.91691 0.84121 0.85304 0.85091 0.87162 0.88561 0.86026 0.86800 0.87004 0.86808 0.86458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.74 13.96 55.43 0.77 -22.96 16 2 C 0.09 2.26 5.24 -17.82 -0.09 2.17 16 3 Si 0.85 18.46 24.74 -169.99 -4.21 14.26 16 4 H -0.26 -5.34 6.49 56.52 0.37 -4.97 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.25 -5.16 4.90 56.52 0.28 -4.89 16 7 C -0.53 -13.57 8.70 -34.44 -0.30 -13.87 16 8 H 0.09 2.53 8.06 -52.49 -0.42 2.10 16 9 C 0.21 4.61 1.86 -29.03 -0.05 4.56 16 10 H 0.05 1.05 3.53 -51.93 -0.18 0.86 16 11 O -0.31 -6.51 8.11 -19.41 -0.16 -6.67 16 12 C 0.22 4.38 6.57 -39.22 -0.26 4.12 16 13 C -0.22 -4.30 8.73 -39.42 -0.34 -4.65 16 14 C -0.04 -0.75 10.04 -39.61 -0.40 -1.15 16 15 C -0.21 -3.23 10.02 -39.49 -0.40 -3.63 16 16 C 0.15 2.43 7.24 -39.44 -0.29 2.14 16 17 F -0.14 -2.13 16.48 2.25 0.04 -2.09 16 18 C -0.20 -3.51 5.28 -104.41 -0.55 -4.07 16 19 C 0.03 0.49 6.38 36.01 0.23 0.72 16 20 Cl -0.19 -2.99 29.13 -51.86 -1.51 -4.50 16 21 C -0.04 -0.75 4.96 -104.63 -0.52 -1.27 16 22 C -0.10 -1.87 9.36 -39.59 -0.37 -2.24 16 23 C -0.12 -2.01 10.05 -39.58 -0.40 -2.41 16 24 C -0.14 -2.17 10.05 -39.58 -0.40 -2.57 16 25 C -0.12 -1.99 10.05 -39.58 -0.40 -2.38 16 26 C -0.13 -2.41 9.67 -39.59 -0.38 -2.79 16 27 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.14 3.00 1.57 -52.49 -0.08 2.92 16 29 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16 30 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 31 H 0.11 1.70 7.54 -51.93 -0.39 1.31 16 32 H 0.10 1.29 7.64 -51.93 -0.40 0.89 16 33 H 0.12 2.28 7.74 -52.49 -0.41 1.87 16 34 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 35 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 36 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 37 H 0.12 2.19 6.23 -52.49 -0.33 1.86 16 LS Contribution 326.02 15.07 4.91 4.91 Total: -1.00 -26.94 326.02 -8.68 -35.62 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -3.62 Total: 8.75 kcal Atomic # 6 Polarization: -22.41 SS G_CDS: -4.91 Total: -27.32 kcal Atomic # 7 Polarization: -23.74 SS G_CDS: 0.77 Total: -22.96 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: -0.16 Total: -6.67 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.04 Total: -2.09 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -4.21 Total: 14.26 kcal Atomic # 17 Polarization: -2.99 SS G_CDS: -1.51 Total: -4.50 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -26.94 -8.68 -35.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222877428.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.137 kcal (2) G-P(sol) polarization free energy of solvation -26.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds