Wall clock time and date at job start Tue Mar 31 2020 12:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99832 * 2 1 4 4 H 1.48506 * 109.47116 * 267.49555 * 3 2 1 5 5 H 1.48492 * 109.47196 * 27.49388 * 3 2 1 6 6 H 1.48501 * 109.47106 * 147.49722 * 3 2 1 7 7 C 1.37877 * 120.00256 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99857 * 0.19561 * 7 2 1 9 9 C 1.50698 * 120.00234 * 180.19938 * 7 2 1 10 10 H 1.09000 * 109.46871 * 30.60175 * 9 7 2 11 11 O 1.42903 * 109.47340 * 150.59843 * 9 7 2 12 12 C 1.35898 * 116.99809 * 273.81039 * 11 9 7 13 13 C 1.38767 * 120.04769 * 5.82395 * 12 11 9 14 14 C 1.38129 * 119.99479 * 180.21384 * 13 12 11 15 15 C 1.38248 * 120.08472 * 359.51786 * 14 13 12 16 16 C 1.38475 * 120.08000 * 0.27305 * 15 14 13 17 17 F 1.35108 * 119.99610 * 179.97438 * 16 15 14 18 18 C 1.38383 * 120.00802 * 359.96009 * 16 15 14 19 19 C 1.50706 * 120.04167 * 180.02562 * 18 16 15 20 20 Cl 1.80298 * 109.47240 * 89.99725 * 19 18 16 21 21 C 1.50690 * 109.47362 * 270.60088 * 9 7 2 22 22 C 1.38235 * 119.99929 * 278.55200 * 21 9 7 23 23 C 1.38243 * 120.00076 * 179.78705 * 22 21 9 24 24 C 1.38238 * 119.99810 * 0.44062 * 23 22 21 25 25 C 1.38235 * 119.99864 * 359.80922 * 24 23 22 26 26 C 1.38232 * 120.00094 * 359.97438 * 25 24 23 27 27 H 0.96995 * 120.00199 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.00260 * 0.02562 * 13 12 11 29 29 H 1.08009 * 119.96039 * 179.79254 * 14 13 12 30 30 H 1.08002 * 119.96463 * 180.25658 * 15 14 13 31 31 H 1.09000 * 109.46616 * 209.99917 * 19 18 16 32 32 H 1.09003 * 109.46944 * 329.99363 * 19 18 16 33 33 H 1.08000 * 120.00124 * 359.97438 * 22 21 9 34 34 H 1.07991 * 120.00126 * 180.26796 * 23 22 21 35 35 H 1.07995 * 119.99809 * 179.83497 * 24 23 22 36 36 H 1.07997 * 120.00152 * 180.02562 * 25 24 23 37 37 H 1.08005 * 119.99853 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5496 2.0159 -1.3988 5 1 1.4211 2.6674 0.6463 6 1 3.5192 1.4561 0.7523 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0041 9 6 3.5115 -1.1940 0.0040 10 1 3.8733 -0.3106 0.5302 11 8 3.9860 -2.3692 0.6643 12 6 4.1117 -2.3091 2.0161 13 6 3.6724 -1.1879 2.7056 14 6 3.8047 -1.1261 4.0792 15 6 4.3655 -2.1844 4.7697 16 6 4.8010 -3.3067 4.0854 17 9 5.3492 -4.3398 4.7619 18 6 4.6746 -3.3704 2.7088 19 6 5.1478 -4.5917 1.9634 20 17 3.7983 -5.7810 1.8400 21 6 4.0182 -1.1760 -1.4151 22 6 4.0829 -2.3508 -2.1408 23 6 4.5436 -2.3336 -3.4441 24 6 4.9480 -1.1431 -4.0186 25 6 4.8881 0.0309 -3.2911 26 6 4.4233 0.0144 -1.9894 27 1 -0.4850 0.8400 -0.0004 28 1 3.2298 -0.3623 2.1681 29 1 3.4656 -0.2517 4.6150 30 1 4.4642 -2.1358 5.8441 31 1 5.4713 -4.3041 0.9631 32 1 5.9826 -5.0436 2.4993 33 1 3.7708 -3.2815 -1.6906 34 1 4.5901 -3.2506 -4.0125 35 1 5.3104 -1.1301 -5.0358 36 1 5.2037 0.9610 -3.7400 37 1 4.3769 0.9315 -1.4209 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222877430.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:58 Heat of formation + Delta-G solvation = -55.653769 kcal Electronic energy + Delta-G solvation = -24393.331254 eV Core-core repulsion = 20654.550735 eV Total energy + Delta-G solvation = -3738.780519 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.072 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.99742 -41.32957 -39.94054 -38.14549 -36.91543 -35.15388 -33.59140 -32.74377 -31.74817 -30.62735 -29.21698 -27.65180 -25.27560 -23.66039 -23.36126 -22.74111 -21.68426 -19.39923 -19.24612 -18.28503 -17.43270 -17.20606 -16.94695 -16.80839 -16.54974 -16.00460 -15.56569 -15.46964 -15.00531 -14.87129 -14.84484 -14.72524 -14.59463 -14.22599 -13.93285 -13.77773 -13.54387 -13.06063 -12.73126 -12.64892 -12.54891 -12.40140 -11.97541 -11.90849 -11.58191 -11.41152 -11.33545 -11.28652 -10.91941 -9.81105 -9.74736 -9.52257 -9.15369 -8.44549 -6.53730 -0.06347 0.30911 0.52278 0.58107 1.20426 1.24950 1.32638 1.49482 2.16649 2.23962 2.65367 2.85209 3.05357 3.30131 3.49238 3.69637 3.96097 4.01568 4.10970 4.16761 4.25228 4.30090 4.35188 4.38543 4.46333 4.54220 4.75122 4.80737 4.91797 5.06273 5.09689 5.22196 5.25076 5.29891 5.40576 5.62670 5.67247 5.71853 5.83117 6.02587 6.19413 6.42443 6.62656 7.12366 8.71512 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.011854 B = 0.005656 C = 0.004524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.407958 B = 4949.145480 C = 6188.199040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.037 3.963 3 Si 0.908 3.092 4 H -0.249 1.249 5 H -0.279 1.279 6 H -0.233 1.233 7 C -0.528 4.528 8 H 0.035 0.965 9 C 0.219 3.781 10 H 0.054 0.946 11 O -0.310 6.310 12 C 0.181 3.819 13 C -0.230 4.230 14 C -0.040 4.040 15 C -0.193 4.193 16 C 0.144 3.856 17 F -0.131 7.131 18 C -0.203 4.203 19 C 0.032 3.968 20 Cl -0.196 7.196 21 C -0.074 4.074 22 C -0.117 4.117 23 C -0.120 4.120 24 C -0.130 4.130 25 C -0.119 4.119 26 C -0.150 4.150 27 H 0.272 0.728 28 H 0.125 0.875 29 H 0.163 0.837 30 H 0.168 0.832 31 H 0.107 0.893 32 H 0.122 0.878 33 H 0.108 0.892 34 H 0.145 0.855 35 H 0.155 0.845 36 H 0.148 0.852 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.869 -1.032 2.312 14.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.164 4.164 3 Si 0.731 3.269 4 H -0.173 1.173 5 H -0.205 1.205 6 H -0.157 1.157 7 C -0.565 4.565 8 H 0.053 0.947 9 C 0.164 3.836 10 H 0.071 0.929 11 O -0.223 6.223 12 C 0.133 3.867 13 C -0.249 4.249 14 C -0.058 4.058 15 C -0.212 4.212 16 C 0.124 3.876 17 F -0.109 7.109 18 C -0.204 4.204 19 C -0.030 4.030 20 Cl -0.170 7.170 21 C -0.075 4.075 22 C -0.135 4.135 23 C -0.138 4.138 24 C -0.148 4.148 25 C -0.137 4.137 26 C -0.168 4.168 27 H 0.082 0.918 28 H 0.142 0.858 29 H 0.181 0.819 30 H 0.186 0.814 31 H 0.125 0.875 32 H 0.140 0.860 33 H 0.127 0.873 34 H 0.162 0.838 35 H 0.172 0.828 36 H 0.166 0.834 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 13.660 -1.224 2.166 13.884 hybrid contribution -0.776 0.580 0.121 0.976 sum 12.884 -0.645 2.287 13.101 Atomic orbital electron populations 1.70003 1.08069 1.28593 1.49816 1.25652 0.95379 1.02268 0.93088 0.86446 0.80028 0.79577 0.80815 1.17337 1.20492 1.15719 1.21189 0.89667 0.93673 1.52013 0.94691 1.19393 0.92649 0.83917 0.87642 0.92867 1.85929 1.79595 1.40772 1.15998 1.18713 0.91206 0.93030 0.83756 1.21645 1.06609 0.99857 0.96775 1.21162 0.93710 0.98744 0.92220 1.21233 1.04951 0.92875 1.02134 1.17187 0.96562 0.85732 0.88075 1.91484 1.82958 1.56919 1.79534 1.19011 1.11517 0.97196 0.92725 1.22842 0.89573 0.87221 1.03412 1.98720 1.55842 1.63490 1.98957 1.20141 0.96239 0.94678 0.96408 1.20977 0.99829 0.97457 0.95259 1.21440 0.98567 0.99608 0.94206 1.21431 1.00485 0.91900 1.00944 1.21351 0.99307 0.99824 0.93216 1.21065 1.01621 0.96610 0.97537 0.91833 0.85757 0.81928 0.81443 0.87488 0.85986 0.87347 0.83770 0.82755 0.83447 0.87291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.19 13.96 21.45 0.30 -54.89 16 2 C 0.04 2.03 5.47 84.65 0.46 2.49 16 3 Si 0.91 39.59 23.61 68.60 1.62 41.21 16 4 H -0.25 -10.32 6.77 99.48 0.67 -9.65 16 5 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.23 -9.09 5.89 99.48 0.59 -8.50 16 7 C -0.53 -29.07 8.39 25.60 0.21 -28.85 16 8 H 0.03 2.24 8.06 -2.91 -0.02 2.22 16 9 C 0.22 10.01 1.54 29.10 0.04 10.06 16 10 H 0.05 2.38 3.36 -2.39 -0.01 2.37 16 11 O -0.31 -13.48 8.10 -92.41 -0.75 -14.23 16 12 C 0.18 7.09 6.58 22.50 0.15 7.23 16 13 C -0.23 -8.66 8.73 22.37 0.20 -8.46 16 14 C -0.04 -1.17 10.04 22.25 0.22 -0.94 16 15 C -0.19 -5.04 10.02 22.33 0.22 -4.82 16 16 C 0.14 4.27 7.24 22.36 0.16 4.43 16 17 F -0.13 -3.59 16.48 44.97 0.74 -2.85 16 18 C -0.20 -6.79 5.28 -19.72 -0.10 -6.89 16 19 C 0.03 0.94 6.38 71.24 0.45 1.39 16 20 Cl -0.20 -6.58 29.13 -2.72 -0.08 -6.66 16 21 C -0.07 -3.12 4.89 -19.87 -0.10 -3.21 16 22 C -0.12 -4.53 9.36 22.27 0.21 -4.32 16 23 C -0.12 -3.68 10.05 22.27 0.22 -3.46 16 24 C -0.13 -3.52 10.05 22.27 0.22 -3.30 16 25 C -0.12 -3.57 10.05 22.27 0.22 -3.35 16 26 C -0.15 -5.62 8.62 22.27 0.19 -5.42 16 27 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 28 H 0.12 5.18 4.75 -2.91 -0.01 5.17 16 29 H 0.16 3.59 8.06 -2.91 -0.02 3.56 16 30 H 0.17 3.16 8.06 -2.91 -0.02 3.14 16 31 H 0.11 3.17 7.53 -2.39 -0.02 3.16 16 32 H 0.12 2.92 7.64 -2.39 -0.02 2.90 16 33 H 0.11 4.39 7.73 -2.91 -0.02 4.37 16 34 H 0.14 3.48 8.06 -2.92 -0.02 3.45 16 35 H 0.15 2.94 8.06 -2.91 -0.02 2.91 16 36 H 0.15 3.38 8.06 -2.91 -0.02 3.35 16 37 H 0.11 3.98 5.27 -2.91 -0.02 3.96 16 Total: -1.00 -65.20 326.64 5.79 -59.40 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: 0.96 Total: 25.44 kcal Atomic # 6 Polarization: -50.43 SS G_CDS: 3.00 Total: -47.43 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: 0.30 Total: -54.89 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -0.75 Total: -14.23 kcal Atomic # 9 Polarization: -3.59 SS G_CDS: 0.74 Total: -2.85 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 1.62 Total: 41.21 kcal Atomic # 17 Polarization: -6.58 SS G_CDS: -0.08 Total: -6.66 kcal Total: -65.20 5.79 -59.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222877430.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.751 kcal (2) G-P(sol) polarization free energy of solvation -65.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds