Wall clock time and date at job start Tue Mar 31 2020 12:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86803 * 120.00004 * 2 1 4 4 H 1.48495 * 109.47135 * 270.00652 * 3 2 1 5 5 H 1.48503 * 109.46902 * 30.00628 * 3 2 1 6 6 H 1.48504 * 109.47136 * 150.00314 * 3 2 1 7 7 C 1.39938 * 120.00291 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00102 * 197.78849 * 7 2 1 9 9 C 1.41424 * 119.99845 * 17.78699 * 7 2 1 10 10 C 1.40787 * 120.18438 * 24.60642 * 9 7 2 11 11 C 1.37681 * 119.98156 * 180.25752 * 10 9 7 12 12 C 1.38435 * 120.38314 * 359.79234 * 11 10 9 13 13 C 1.39680 * 120.37505 * 359.97438 * 12 11 10 14 14 C 1.48438 * 119.99602 * 179.97438 * 13 12 11 15 15 C 1.39487 * 120.03504 * 179.74498 * 14 13 12 16 16 C 1.38160 * 120.22377 * 179.78598 * 15 14 13 17 17 C 1.37979 * 120.30649 * 0.47192 * 16 15 14 18 18 C 1.39890 * 120.06599 * 359.78420 * 17 16 15 19 19 C 1.47191 * 120.11384 * 180.02562 * 18 17 16 20 20 O 1.21247 * 120.00185 * 179.97438 * 19 18 17 21 21 C 1.50699 * 119.99735 * 359.97438 * 19 18 17 22 22 F 1.39908 * 109.46732 * 180.02562 * 21 19 18 23 23 F 1.39905 * 109.47485 * 299.99899 * 21 19 18 24 24 F 1.39897 * 109.47333 * 60.00768 * 21 19 18 25 25 C 1.38986 * 120.03393 * 0.02562 * 14 13 12 26 26 C 1.38753 * 120.00692 * 359.97438 * 13 12 11 27 27 H 0.96995 * 120.00309 * 359.97438 * 1 2 3 28 28 H 1.07995 * 120.01401 * 0.02562 * 10 9 7 29 29 H 1.08001 * 119.80862 * 179.77200 * 11 10 9 30 30 H 1.07997 * 119.81235 * 179.97438 * 12 11 10 31 31 H 1.08001 * 119.88273 * 0.02562 * 15 14 13 32 32 H 1.08008 * 119.84465 * 180.21401 * 16 15 14 33 33 H 1.08007 * 119.96832 * 179.76599 * 17 16 15 34 34 H 1.08002 * 120.14924 * 359.97438 * 25 14 13 35 35 H 1.07993 * 120.19145 * 179.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4896 2.0465 -1.4000 5 1 1.4397 2.6526 0.7002 6 1 3.5399 1.4402 0.7000 7 6 2.0080 -1.2119 -0.0005 8 1 3.0493 -1.2343 0.2852 9 6 1.3516 -2.4072 -0.3752 10 6 0.2218 -2.3614 -1.2140 11 6 -0.4172 -3.5272 -1.5718 12 6 0.0471 -4.7488 -1.1150 13 6 1.1695 -4.8126 -0.2861 14 6 1.6598 -6.1269 0.1994 15 6 2.7838 -6.1920 1.0228 16 6 3.2409 -7.4128 1.4805 17 6 2.5957 -8.5778 1.1193 18 6 1.4704 -8.5274 0.2897 19 6 0.7810 -9.7694 -0.0959 20 8 -0.1944 -9.7234 -0.8146 21 6 1.2875 -11.0983 0.4028 22 9 0.4752 -12.1232 -0.0943 23 9 2.6018 -11.2910 -0.0362 24 9 1.2558 -11.1144 1.8013 25 6 1.0028 -7.2944 -0.1709 26 6 1.8263 -3.6476 0.0836 27 1 -0.4850 0.8400 0.0004 28 1 -0.1459 -1.4117 -1.5736 29 1 -1.2859 -3.4885 -2.2124 30 1 -0.4615 -5.6575 -1.4011 31 1 3.2962 -5.2846 1.3067 32 1 4.1097 -7.4558 2.1206 33 1 2.9599 -9.5295 1.4771 34 1 0.1347 -7.2484 -0.8117 35 1 2.6942 -3.6934 0.7246 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239379848.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:20 Heat of formation + Delta-G solvation = -152.029183 kcal Electronic energy + Delta-G solvation = -25115.640950 eV Core-core repulsion = 20820.884600 eV Total energy + Delta-G solvation = -4294.756350 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.076 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.46493 -48.96214 -48.92059 -41.41978 -40.10917 -38.77923 -35.69964 -33.59786 -32.63210 -31.70744 -30.13589 -28.84914 -27.26137 -25.08758 -24.25085 -22.90264 -21.93790 -21.54727 -19.97677 -19.86131 -19.53428 -18.66425 -17.99505 -17.13979 -17.05821 -16.37695 -16.20844 -16.08724 -15.75178 -15.51307 -15.49854 -15.32281 -15.09169 -15.06025 -15.03289 -14.79102 -14.60267 -14.44320 -14.10999 -13.95477 -13.41752 -13.11887 -12.84905 -12.77125 -12.51649 -12.26893 -12.09193 -11.66605 -11.43354 -11.21457 -11.09411 -10.49580 -10.14549 -9.44112 -8.79986 -8.64013 -6.36376 -0.88980 -0.04144 0.69131 0.96436 0.96769 1.29200 1.39850 1.52483 1.54928 2.11989 2.20795 2.56935 2.63919 2.85471 3.02573 3.25357 3.67226 3.76370 3.78863 4.01950 4.18336 4.28878 4.43861 4.55147 4.66417 4.90231 4.98402 5.02234 5.10221 5.17714 5.25371 5.35274 5.49796 5.55894 5.64806 5.78955 5.95750 6.05746 6.13880 6.32949 6.65917 6.92020 6.99221 8.32743 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.031051 B = 0.002647 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.520761 B =10576.504264 C =11231.607620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.035 3.965 3 Si 0.982 3.018 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.255 1.255 7 C -0.498 4.498 8 H 0.080 0.920 9 C 0.079 3.921 10 C -0.184 4.184 11 C -0.110 4.110 12 C -0.228 4.228 13 C -0.041 4.041 14 C -0.051 4.051 15 C -0.072 4.072 16 C -0.113 4.113 17 C -0.064 4.064 18 C -0.184 4.184 19 C 0.378 3.622 20 O -0.409 6.409 21 C 0.439 3.561 22 F -0.167 7.167 23 F -0.156 7.156 24 F -0.157 7.157 25 C -0.054 4.054 26 C -0.217 4.217 27 H 0.288 0.712 28 H 0.102 0.898 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.140 0.860 32 H 0.173 0.827 33 H 0.158 0.842 34 H 0.131 0.869 35 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.135 -16.378 3.520 17.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.180 4.180 3 Si 0.802 3.198 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.179 1.179 7 C -0.527 4.527 8 H 0.098 0.902 9 C 0.077 3.923 10 C -0.204 4.204 11 C -0.128 4.128 12 C -0.247 4.247 13 C -0.041 4.041 14 C -0.051 4.051 15 C -0.090 4.090 16 C -0.131 4.131 17 C -0.082 4.082 18 C -0.185 4.185 19 C 0.250 3.750 20 O -0.280 6.280 21 C 0.384 3.616 22 F -0.149 7.149 23 F -0.138 7.138 24 F -0.138 7.138 25 C -0.072 4.072 26 C -0.236 4.236 27 H 0.098 0.902 28 H 0.120 0.880 29 H 0.129 0.871 30 H 0.132 0.868 31 H 0.158 0.842 32 H 0.191 0.809 33 H 0.175 0.825 34 H 0.148 0.852 35 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.397 -16.249 3.157 17.410 hybrid contribution -0.152 0.774 -0.135 0.801 sum 5.244 -15.475 3.022 16.616 Atomic orbital electron populations 1.69873 1.09079 1.30571 1.35738 1.26755 0.95437 1.04568 0.91200 0.85208 0.79186 0.75942 0.79425 1.18900 1.19491 1.17888 1.19843 0.98486 0.92267 1.42149 0.90152 1.17909 0.91907 0.93133 0.89386 1.21409 1.00143 0.97079 1.01735 1.20900 0.99126 0.92920 0.99891 1.20771 1.00544 0.96851 1.06565 1.18556 0.95996 0.91414 0.98134 1.18995 0.96169 0.91859 0.98063 1.21926 0.93738 0.99962 0.93368 1.21421 1.01167 0.90270 1.00194 1.21774 0.92096 1.00760 0.93542 1.19721 1.00888 0.91749 1.06170 1.23057 0.84026 0.88858 0.79060 1.90666 1.22372 1.87648 1.27336 1.20506 0.76801 0.87400 0.76913 1.93254 1.72828 1.61446 1.87339 1.93277 1.35625 1.95697 1.89172 1.93276 1.96078 1.96716 1.27730 1.21407 0.98563 0.90416 0.96786 1.21256 1.03957 0.91766 1.06616 0.90160 0.88048 0.87144 0.86792 0.84191 0.80911 0.82453 0.85166 0.86928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.68 10.96 21.82 0.24 -42.45 16 2 C 0.04 1.74 5.14 85.25 0.44 2.18 16 3 Si 0.98 37.20 29.60 68.60 2.03 39.23 16 4 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 5 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 6 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 7 C -0.50 -25.97 9.05 23.47 0.21 -25.76 16 8 H 0.08 3.98 7.91 -2.91 -0.02 3.96 16 9 C 0.08 4.14 5.57 -21.32 -0.12 4.02 16 10 C -0.18 -9.60 8.69 22.76 0.20 -9.41 16 11 C -0.11 -5.10 10.01 22.18 0.22 -4.87 16 12 C -0.23 -9.82 9.43 22.67 0.21 -9.61 16 13 C -0.04 -1.73 5.87 -20.09 -0.12 -1.84 16 14 C -0.05 -1.71 5.87 -20.08 -0.12 -1.83 16 15 C -0.07 -1.94 9.42 22.55 0.21 -1.73 16 16 C -0.11 -2.18 10.01 22.19 0.22 -1.96 16 17 C -0.06 -1.23 8.94 22.61 0.20 -1.03 16 18 C -0.18 -4.56 5.86 -20.18 -0.12 -4.67 16 19 C 0.38 9.03 6.67 28.04 0.19 9.21 16 20 O -0.41 -11.93 16.60 -2.93 -0.05 -11.98 16 21 C 0.44 8.54 2.80 71.24 0.20 8.74 16 22 F -0.17 -3.59 16.92 44.97 0.76 -2.83 16 23 F -0.16 -2.73 16.14 44.97 0.73 -2.00 16 24 F -0.16 -2.76 16.14 44.97 0.73 -2.03 16 25 C -0.05 -1.64 8.97 22.80 0.20 -1.43 16 26 C -0.22 -10.04 9.17 22.95 0.21 -9.83 16 27 H 0.29 13.45 8.30 -92.71 -0.77 12.68 16 28 H 0.10 5.54 6.16 -2.91 -0.02 5.52 16 29 H 0.11 4.53 8.06 -2.91 -0.02 4.50 16 30 H 0.11 4.32 6.18 -2.91 -0.02 4.30 16 31 H 0.14 3.67 6.18 -2.91 -0.02 3.65 16 32 H 0.17 1.99 8.06 -2.91 -0.02 1.97 16 33 H 0.16 2.11 5.88 -2.91 -0.02 2.09 16 34 H 0.13 4.15 5.77 -2.91 -0.02 4.13 16 35 H 0.11 4.70 6.18 -2.91 -0.02 4.68 16 Total: -1.00 -59.03 317.81 7.86 -51.17 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: 1.18 Total: 20.71 kcal Atomic # 6 Polarization: -52.08 SS G_CDS: 2.25 Total: -49.83 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: 0.24 Total: -42.45 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: -0.05 Total: -11.98 kcal Atomic # 9 Polarization: -9.08 SS G_CDS: 2.21 Total: -6.87 kcal Atomic # 14 Polarization: 37.20 SS G_CDS: 2.03 Total: 39.23 kcal Total: -59.03 7.86 -51.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239379848.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.855 kcal (2) G-P(sol) polarization free energy of solvation -59.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds