Wall clock time and date at job start Tue Mar 31 2020 12:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42100 * 110.54576 * 2 1 4 4 O 1.42101 * 110.54235 * 223.24639 * 2 1 3 5 5 C 1.76202 * 104.44803 * 111.62219 * 2 1 3 6 6 C 1.38315 * 119.87846 * 269.72430 * 5 2 1 7 7 C 1.38022 * 120.12204 * 179.76256 * 6 5 2 8 8 C 1.39338 * 119.87585 * 0.51742 * 7 6 5 9 9 C 1.48385 * 120.12113 * 179.76944 * 8 7 6 10 10 C 1.39587 * 120.01981 * 129.69526 * 9 8 7 11 11 C 1.38464 * 120.41896 * 179.78394 * 10 9 8 12 12 C 1.37654 * 120.45581 * 0.46479 * 11 10 9 13 13 C 1.40745 * 120.01935 * 359.79454 * 12 11 10 14 14 C 1.41313 * 120.20785 * 179.97438 * 13 12 11 15 15 H 1.08009 * 119.99810 * 155.07601 * 14 13 12 16 16 C 1.39931 * 120.00273 * 335.08082 * 14 13 12 17 17 N 1.30842 * 119.99952 * 342.27608 * 16 14 13 18 18 Si 1.86807 * 120.00261 * 162.27865 * 16 14 13 19 19 H 1.48494 * 109.47123 * 94.65308 * 18 16 14 20 20 H 1.48497 * 109.46962 * 214.65470 * 18 16 14 21 21 H 1.48504 * 109.46616 * 334.65408 * 18 16 14 22 22 C 1.39068 * 120.00928 * 309.96478 * 9 8 7 23 23 F 1.35095 * 120.22969 * 359.96147 * 22 9 8 24 24 C 1.39344 * 119.75845 * 359.73409 * 8 7 6 25 25 C 1.38011 * 119.87633 * 0.02562 * 24 8 7 26 26 H 1.08998 * 109.46813 * 68.37671 * 1 2 3 27 27 H 1.09002 * 109.47050 * 188.37812 * 1 2 3 28 28 H 1.09001 * 109.46973 * 308.37756 * 1 2 3 29 29 H 1.08000 * 119.94156 * 0.02562 * 6 5 2 30 30 H 1.08003 * 120.06496 * 180.27443 * 7 6 5 31 31 H 1.07999 * 119.79187 * 359.97438 * 10 9 8 32 32 H 1.08001 * 119.77346 * 180.21973 * 11 10 9 33 33 H 1.07999 * 119.99218 * 179.76391 * 12 11 10 34 34 H 0.97003 * 120.00384 * 180.02562 * 17 16 14 35 35 H 1.07990 * 120.06031 * 180.02562 * 24 8 7 36 36 H 1.08001 * 119.94012 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3127 -0.9693 -0.9117 5 6 2.2537 -0.6287 1.5862 6 6 2.4312 0.2408 2.6471 7 6 2.7708 -0.2466 3.8929 8 6 2.9453 -1.6166 4.0783 9 6 3.3154 -2.1461 5.4141 10 6 2.5891 -3.1985 5.9739 11 6 2.9301 -3.7019 7.2179 12 6 3.9835 -3.1652 7.9230 13 6 4.7252 -2.1001 7.3788 14 6 5.8070 -1.5457 8.0994 15 1 6.6049 -1.0424 7.5734 16 6 5.8447 -1.6489 9.4944 17 7 4.7541 -1.9335 10.1590 18 14 7.4518 -1.3803 10.4080 19 1 7.5357 0.0326 10.8571 20 1 7.5062 -2.2792 11.5887 21 1 8.5911 -1.6808 9.5040 22 6 4.3826 -1.5902 6.1113 23 9 5.0862 -0.5685 5.5765 24 6 2.7703 -2.4876 3.0048 25 6 2.4259 -1.9896 1.7645 26 1 -0.3633 0.3787 -0.9553 27 1 -0.3633 -1.0167 0.1497 28 1 -0.3633 0.6380 0.8056 29 1 2.2996 1.3028 2.5014 30 1 2.9048 0.4328 4.7217 31 1 1.7579 -3.6248 5.4320 32 1 2.3632 -4.5188 7.6396 33 1 4.2405 -3.5612 8.8944 34 1 4.7800 -2.0047 11.1261 35 1 2.9040 -3.5502 3.1430 36 1 2.2904 -2.6638 0.9317 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239701436.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:14 Heat of formation + Delta-G solvation = -76.229507 kcal Electronic energy + Delta-G solvation = -23422.913202 eV Core-core repulsion = 19685.284158 eV Total energy + Delta-G solvation = -3737.629043 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.067 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -47.43371 -39.14497 -37.27233 -37.15931 -35.99750 -34.11388 -32.00793 -30.91202 -29.83461 -29.71111 -28.23826 -25.52933 -23.34143 -22.66313 -20.87671 -20.54413 -19.05919 -17.92941 -17.42037 -16.30388 -16.20773 -16.03785 -15.49265 -15.39774 -14.78311 -14.53598 -14.42502 -14.02939 -13.76957 -13.43300 -13.41161 -13.32847 -13.00895 -12.74483 -12.37895 -12.15125 -12.04031 -12.00286 -11.77419 -11.40178 -11.25514 -11.21717 -11.16195 -10.80045 -10.64578 -10.58871 -10.04218 -9.74984 -9.46363 -9.05071 -8.87037 -7.68231 -7.44608 -6.99023 -4.58707 -0.02053 0.89132 1.51579 2.48661 2.51437 2.82228 2.97433 2.99145 3.06163 3.59518 3.79025 3.95790 4.02234 4.35599 4.54571 4.70581 4.98682 4.99969 5.10196 5.29762 5.38998 5.51729 5.59479 5.67165 5.87869 6.02754 6.12432 6.24109 6.31912 6.38055 6.62839 6.68977 6.92096 6.97712 7.04118 7.27836 7.37585 7.70101 7.77498 7.88081 8.33355 8.55297 8.62451 9.94733 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.028326 B = 0.002961 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.263268 B = 9454.529285 C =10013.671424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.651 4.651 2 S 2.505 3.495 3 O -0.942 6.942 4 O -0.943 6.943 5 C -0.676 4.676 6 C -0.024 4.024 7 C -0.127 4.127 8 C 0.045 3.955 9 C -0.083 4.083 10 C -0.198 4.198 11 C -0.111 4.111 12 C -0.138 4.138 13 C 0.085 3.915 14 C -0.452 4.452 15 H 0.085 0.915 16 C 0.077 3.923 17 N -0.787 5.787 18 Si 0.913 3.087 19 H -0.268 1.268 20 H -0.273 1.273 21 H -0.258 1.258 22 C -0.005 4.005 23 F -0.155 7.155 24 C -0.134 4.134 25 C -0.027 4.027 26 H 0.128 0.872 27 H 0.131 0.869 28 H 0.131 0.869 29 H 0.138 0.862 30 H 0.133 0.867 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.127 0.873 34 H 0.285 0.715 35 H 0.133 0.867 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.657 0.450 -11.060 14.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.801 4.801 2 S 2.685 3.315 3 O -0.939 6.939 4 O -0.941 6.941 5 C -0.764 4.764 6 C -0.043 4.043 7 C -0.146 4.146 8 C 0.045 3.955 9 C -0.084 4.084 10 C -0.218 4.218 11 C -0.130 4.130 12 C -0.157 4.157 13 C 0.082 3.918 14 C -0.480 4.480 15 H 0.103 0.897 16 C -0.142 4.142 17 N -0.411 5.411 18 Si 0.737 3.263 19 H -0.193 1.193 20 H -0.198 1.198 21 H -0.182 1.182 22 C -0.025 4.025 23 F -0.134 7.134 24 C -0.153 4.153 25 C -0.046 4.046 26 H 0.146 0.854 27 H 0.149 0.851 28 H 0.150 0.850 29 H 0.156 0.844 30 H 0.151 0.849 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.145 0.855 34 H 0.096 0.904 35 H 0.151 0.849 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.164 0.729 -11.484 14.109 hybrid contribution 0.257 -0.007 1.297 1.322 sum -7.907 0.722 -10.187 12.915 Atomic orbital electron populations 1.30238 1.26338 1.12003 1.11504 1.04898 0.77579 0.74515 0.74485 1.93573 1.77225 1.36788 1.86347 1.93566 1.77273 1.61702 1.61518 1.30227 1.21685 1.03010 1.21455 1.20799 0.93137 0.98996 0.91411 1.21462 1.00392 0.95204 0.97521 1.19329 0.89972 0.93043 0.93131 1.18332 0.98064 0.99368 0.92630 1.20207 1.03085 1.00594 0.97868 1.20665 0.98066 0.99572 0.94649 1.21282 0.97180 0.96399 1.00848 1.17560 0.93371 0.91542 0.89361 1.19542 1.05646 1.31445 0.91375 0.89738 1.25928 0.97867 0.92384 0.98068 1.69796 1.27963 1.33711 1.09640 0.86201 0.81889 0.79183 0.79041 1.19291 1.19789 1.18168 1.17821 0.96309 0.91931 0.96431 1.91294 1.78325 1.57664 1.86163 1.21367 1.01676 1.00250 0.92021 1.20774 0.93413 0.93000 0.97411 0.85372 0.85056 0.85016 0.84425 0.84877 0.88167 0.88288 0.85480 0.90415 0.84942 0.84482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -3.81 10.80 101.05 1.09 -2.72 16 2 S 2.50 26.23 5.80 -107.50 -0.62 25.61 16 3 O -0.94 -12.87 17.11 -57.54 -0.98 -13.85 16 4 O -0.94 -12.60 17.11 -57.54 -0.98 -13.59 16 5 C -0.68 -8.87 5.66 -39.52 -0.22 -9.09 16 6 C -0.02 -0.35 9.46 -39.63 -0.37 -0.73 16 7 C -0.13 -2.18 8.86 -39.25 -0.35 -2.53 16 8 C 0.05 0.84 5.31 -104.90 -0.56 0.28 16 9 C -0.08 -1.77 5.47 -104.91 -0.57 -2.35 16 10 C -0.20 -4.00 9.51 -38.99 -0.37 -4.38 16 11 C -0.11 -2.34 10.01 -39.71 -0.40 -2.74 16 12 C -0.14 -3.29 8.68 -38.85 -0.34 -3.63 16 13 C 0.08 2.17 5.57 -106.80 -0.60 1.58 16 14 C -0.45 -11.64 8.78 -37.78 -0.33 -11.97 16 15 H 0.08 2.17 7.74 -52.48 -0.41 1.76 16 16 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 17 N -0.79 -19.06 10.97 55.55 0.61 -18.45 16 18 Si 0.91 17.90 29.60 -169.99 -5.03 12.87 16 19 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 20 H -0.27 -5.17 7.11 56.52 0.40 -4.76 16 21 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 22 C 0.00 -0.11 7.16 -38.29 -0.27 -0.39 16 23 F -0.16 -3.79 15.33 2.25 0.03 -3.76 16 24 C -0.13 -2.11 9.51 -39.25 -0.37 -2.49 16 25 C -0.03 -0.37 9.46 -39.63 -0.37 -0.74 16 26 H 0.13 0.52 8.14 -51.92 -0.42 0.10 16 27 H 0.13 0.60 8.14 -51.92 -0.42 0.17 16 28 H 0.13 0.63 8.14 -51.92 -0.42 0.20 16 29 H 0.14 1.66 7.55 -52.49 -0.40 1.27 16 30 H 0.13 2.33 7.78 -52.48 -0.41 1.92 16 31 H 0.10 1.75 8.04 -52.49 -0.42 1.33 16 32 H 0.10 1.81 8.06 -52.49 -0.42 1.38 16 33 H 0.13 3.10 6.17 -52.49 -0.32 2.78 16 34 H 0.28 6.22 8.30 -40.82 -0.34 5.88 16 35 H 0.13 1.89 8.04 -52.49 -0.42 1.47 16 36 H 0.14 1.50 7.56 -52.49 -0.40 1.10 16 LS Contribution 330.27 15.07 4.98 4.98 Total: -1.00 -31.49 330.27 -9.73 -41.22 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -3.60 Total: 5.11 kcal Atomic # 6 Polarization: -36.02 SS G_CDS: -4.13 Total: -40.15 kcal Atomic # 7 Polarization: -19.06 SS G_CDS: 0.61 Total: -18.45 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -1.97 Total: -27.44 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.03 Total: -3.76 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.87 kcal Atomic # 16 Polarization: 26.23 SS G_CDS: -0.62 Total: 25.61 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.49 -9.73 -41.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239701436.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.006 kcal (2) G-P(sol) polarization free energy of solvation -31.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds