Wall clock time and date at job start Tue Mar 31 2020 12:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 O 1.42104 * 110.54559 * 2 1 4 4 O 1.42096 * 110.54498 * 223.24861 * 2 1 3 5 5 C 1.76208 * 104.44906 * 111.62533 * 2 1 3 6 6 C 1.38415 * 119.92222 * 270.27422 * 5 2 1 7 7 C 1.38386 * 120.29953 * 180.27534 * 6 5 2 8 8 C 1.37940 * 120.14635 * 359.44918 * 7 6 5 9 9 C 1.39642 * 119.85204 * 0.27403 * 8 7 6 10 10 C 1.47851 * 120.15226 * 180.02562 * 9 8 7 11 11 C 1.39139 * 120.24767 * 129.71820 * 10 9 8 12 12 C 1.38026 * 120.13440 * 179.78696 * 11 10 9 13 13 C 1.39184 * 120.64848 * 0.48028 * 12 11 10 14 14 F 1.35091 * 119.74870 * 179.75877 * 13 12 11 15 15 C 1.37642 * 120.49638 * 359.77934 * 13 12 11 16 16 C 1.40710 * 119.84926 * 359.97438 * 15 13 12 17 17 C 1.40889 * 120.31559 * 179.97438 * 16 15 13 18 18 H 1.08006 * 119.99636 * 154.01550 * 17 16 15 19 19 C 1.40062 * 120.00175 * 334.01310 * 17 16 15 20 20 N 1.30780 * 119.99897 * 344.27658 * 19 17 16 21 21 Si 1.86803 * 119.99957 * 164.27516 * 19 17 16 22 22 H 1.48501 * 109.46841 * 90.00115 * 21 19 17 23 23 H 1.48500 * 109.46788 * 210.00393 * 21 19 17 24 24 H 1.48493 * 109.46918 * 330.00238 * 21 19 17 25 25 C 1.37899 * 119.92300 * 89.99956 * 5 2 1 26 26 H 1.09002 * 109.47104 * 308.37908 * 1 2 3 27 27 H 1.09006 * 109.47328 * 68.37058 * 1 2 3 28 28 H 1.08990 * 109.47479 * 188.37367 * 1 2 3 29 29 H 1.07999 * 119.85551 * 0.02562 * 6 5 2 30 30 H 1.07993 * 119.92546 * 179.71916 * 7 6 5 31 31 H 1.08002 * 120.07957 * 180.25137 * 8 7 6 32 32 H 1.07995 * 119.93709 * 0.02562 * 11 10 9 33 33 H 1.07995 * 119.67455 * 180.23769 * 12 11 10 34 34 H 1.08005 * 120.07390 * 179.97438 * 15 13 12 35 35 H 0.96993 * 119.99616 * 179.97438 * 20 19 17 36 36 H 1.08002 * 120.07689 * 359.97438 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9117 5 6 2.2536 -0.6288 1.5862 6 6 2.4203 0.2394 2.6512 7 6 2.7711 -0.2454 3.8990 8 6 2.9459 -1.6000 4.0918 9 6 2.7737 -2.4822 3.0231 10 6 2.9589 -3.9354 3.2224 11 6 1.9858 -4.8316 2.7911 12 6 2.1631 -6.1881 2.9745 13 6 3.3072 -6.6762 3.5991 14 9 3.4597 -8.0070 3.7735 15 6 4.2840 -5.8129 4.0408 16 6 4.1272 -4.4263 3.8601 17 6 5.1207 -3.5338 4.3089 18 1 5.2339 -2.5695 3.8358 19 6 5.9615 -3.8970 5.3685 20 7 5.6451 -4.9060 6.1380 21 14 7.5349 -2.9403 5.6826 22 1 7.2548 -1.8198 6.6160 23 1 8.5511 -3.8419 6.2822 24 1 8.0493 -2.3986 4.3992 25 6 2.4252 -1.9854 1.7650 26 1 -0.3633 0.6380 0.8056 27 1 -0.3634 0.3788 -0.9553 28 1 -0.3634 -1.0166 0.1496 29 1 2.2800 1.3005 2.5069 30 1 2.9041 0.4379 4.7246 31 1 3.2158 -1.9776 5.0670 32 1 1.0918 -4.4654 2.3085 33 1 1.4048 -6.8773 2.6334 34 1 5.1689 -6.1990 4.5250 35 1 6.2276 -5.1577 6.8716 36 1 2.2901 -2.6622 0.9343 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239834713.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:35 Heat of formation + Delta-G solvation = -78.261105 kcal Electronic energy + Delta-G solvation = -23869.395536 eV Core-core repulsion = 20131.678396 eV Total energy + Delta-G solvation = -3737.717140 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.067 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -47.77587 -39.04701 -37.16535 -36.98726 -35.83984 -33.96512 -31.79332 -30.93080 -29.90517 -29.54021 -27.92345 -25.68937 -22.81173 -22.66914 -21.25800 -20.33199 -18.69380 -17.84009 -17.36222 -16.16769 -16.07075 -15.82775 -15.56372 -15.07919 -14.85212 -14.74978 -14.44825 -14.25021 -13.53886 -13.40662 -13.28278 -13.13010 -12.82622 -12.69255 -12.01346 -11.98829 -11.96638 -11.85878 -11.75776 -11.69985 -11.25571 -11.13827 -10.99083 -10.83105 -10.59201 -10.38391 -10.01803 -9.84567 -9.43147 -8.87564 -8.53881 -7.77651 -7.32536 -7.00586 -4.68452 0.13682 1.26610 1.62737 2.49652 2.64766 2.94112 2.96468 2.97824 3.03563 3.72818 3.79277 4.16405 4.16910 4.32405 4.66392 4.85805 5.20689 5.24228 5.32884 5.50378 5.51998 5.59624 5.77374 5.82176 6.04302 6.16893 6.21631 6.38031 6.41305 6.70936 6.72615 6.80792 6.92217 7.10348 7.25077 7.29393 7.49873 7.58756 7.71224 7.95813 8.28805 8.53566 8.58217 9.86526 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.012940 B = 0.004675 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.365393 B = 5987.952601 C = 7527.219227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.652 4.652 2 S 2.500 3.500 3 O -0.946 6.946 4 O -0.940 6.940 5 C -0.659 4.659 6 C -0.051 4.051 7 C -0.145 4.145 8 C -0.044 4.044 9 C 0.003 3.997 10 C -0.199 4.199 11 C -0.044 4.044 12 C -0.276 4.276 13 C 0.111 3.889 14 F -0.166 7.166 15 C -0.195 4.195 16 C 0.148 3.852 17 C -0.445 4.445 18 H 0.088 0.912 19 C 0.076 3.924 20 N -0.778 5.778 21 Si 0.908 3.092 22 H -0.266 1.266 23 H -0.273 1.273 24 H -0.257 1.257 25 C -0.038 4.038 26 H 0.130 0.870 27 H 0.126 0.874 28 H 0.132 0.868 29 H 0.130 0.870 30 H 0.124 0.876 31 H 0.138 0.862 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.132 0.868 35 H 0.287 0.713 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.711 8.183 -4.099 11.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.802 4.802 2 S 2.681 3.319 3 O -0.943 6.943 4 O -0.937 6.937 5 C -0.747 4.747 6 C -0.070 4.070 7 C -0.164 4.164 8 C -0.062 4.062 9 C 0.002 3.998 10 C -0.201 4.201 11 C -0.062 4.062 12 C -0.296 4.296 13 C 0.092 3.908 14 F -0.145 7.145 15 C -0.215 4.215 16 C 0.145 3.855 17 C -0.473 4.473 18 H 0.106 0.894 19 C -0.145 4.145 20 N -0.401 5.401 21 Si 0.732 3.268 22 H -0.191 1.191 23 H -0.198 1.198 24 H -0.181 1.181 25 C -0.057 4.057 26 H 0.148 0.852 27 H 0.145 0.855 28 H 0.150 0.850 29 H 0.148 0.852 30 H 0.142 0.858 31 H 0.156 0.844 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.150 0.850 35 H 0.098 0.902 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.072 8.261 -4.530 11.781 hybrid contribution 0.283 -0.270 1.115 1.182 sum -6.790 7.991 -3.415 11.028 Atomic orbital electron populations 1.30243 1.26591 1.12031 1.11291 1.04994 0.77556 0.74512 0.74824 1.93554 1.77258 1.36959 1.86544 1.93582 1.77056 1.61480 1.61599 1.30070 1.20755 1.02962 1.20921 1.20746 0.95849 0.98441 0.91956 1.21167 1.02284 0.95842 0.97105 1.21837 0.92102 0.92361 0.99887 1.18862 0.95481 0.93516 0.91898 1.18533 0.97399 0.89647 1.14519 1.20372 0.96822 0.91969 0.97043 1.20203 0.99752 0.95604 1.14068 1.17782 0.96596 0.75996 1.00475 1.91343 1.96126 1.33039 1.93962 1.21270 0.99980 0.92998 1.07234 1.17243 0.89807 0.91172 0.87249 1.19636 1.11954 1.02591 1.13123 0.89376 1.26025 0.98858 0.94816 0.94786 1.69769 1.35342 1.22936 1.12068 0.86277 0.80571 0.80019 0.79963 1.19078 1.19767 1.18057 1.21069 0.94799 0.92500 0.97317 0.85155 0.85501 0.84976 0.85199 0.85813 0.84410 0.88078 0.87916 0.85018 0.90186 0.84729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -4.78 10.80 101.05 1.09 -3.69 16 2 S 2.50 30.57 5.79 -107.50 -0.62 29.95 16 3 O -0.95 -13.91 17.12 -57.54 -0.99 -14.90 16 4 O -0.94 -14.82 17.12 -57.54 -0.98 -15.81 16 5 C -0.66 -9.75 5.65 -39.64 -0.22 -9.97 16 6 C -0.05 -0.73 9.47 -39.46 -0.37 -1.10 16 7 C -0.15 -2.20 10.03 -39.64 -0.40 -2.59 16 8 C -0.04 -0.79 7.98 -39.17 -0.31 -1.10 16 9 C 0.00 0.07 4.92 -104.90 -0.52 -0.45 16 10 C -0.20 -4.37 5.52 -104.24 -0.58 -4.95 16 11 C -0.04 -0.90 9.50 -39.32 -0.37 -1.27 16 12 C -0.28 -5.91 10.01 -39.31 -0.39 -6.31 16 13 C 0.11 2.60 7.28 -39.45 -0.29 2.31 16 14 F -0.17 -3.78 17.26 2.25 0.04 -3.74 16 15 C -0.19 -4.83 8.64 -38.87 -0.34 -5.17 16 16 C 0.15 3.60 5.56 -106.57 -0.59 3.01 16 17 C -0.45 -10.57 7.13 -37.90 -0.27 -10.84 16 18 H 0.09 2.06 6.59 -52.48 -0.35 1.71 16 19 C 0.08 1.73 5.17 -17.32 -0.09 1.64 16 20 N -0.78 -18.40 10.93 55.55 0.61 -17.79 16 21 Si 0.91 17.35 29.59 -169.99 -5.03 12.32 16 22 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 23 H -0.27 -5.14 7.11 56.52 0.40 -4.73 16 24 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 25 C -0.04 -0.65 8.94 -39.17 -0.35 -1.00 16 26 H 0.13 0.75 8.14 -51.92 -0.42 0.32 16 27 H 0.13 0.69 8.14 -51.92 -0.42 0.26 16 28 H 0.13 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.13 1.53 7.57 -52.49 -0.40 1.13 16 30 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 31 H 0.14 2.61 7.30 -52.49 -0.38 2.22 16 32 H 0.10 1.75 8.04 -52.49 -0.42 1.33 16 33 H 0.10 1.96 8.06 -52.49 -0.42 1.54 16 34 H 0.13 3.39 6.19 -52.48 -0.32 3.07 16 35 H 0.29 6.19 8.29 -40.82 -0.34 5.85 16 36 H 0.13 2.20 7.55 -52.49 -0.40 1.81 16 LS Contribution 327.81 15.07 4.94 4.94 Total: -1.00 -30.08 327.81 -9.56 -39.64 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -3.52 Total: 6.87 kcal Atomic # 6 Polarization: -37.48 SS G_CDS: -4.00 Total: -41.48 kcal Atomic # 7 Polarization: -18.40 SS G_CDS: 0.61 Total: -17.79 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -1.97 Total: -30.71 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.04 Total: -3.74 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -5.03 Total: 12.32 kcal Atomic # 16 Polarization: 30.57 SS G_CDS: -0.62 Total: 29.95 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.08 -9.56 -39.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239834713.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.620 kcal (2) G-P(sol) polarization free energy of solvation -30.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds