Wall clock time and date at job start Tue Mar 31 2020 12:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42102 * 109.47215 * 2 1 4 4 C 1.76197 * 103.00135 * 250.93776 * 2 1 3 5 5 C 1.38033 * 120.06300 * 94.93511 * 4 2 1 6 6 C 1.38310 * 120.12211 * 180.30371 * 5 4 2 7 7 C 1.38354 * 120.25944 * 359.71766 * 6 5 4 8 8 C 1.37976 * 120.13086 * 359.97438 * 7 6 5 9 9 C 1.39381 * 120.06528 * 274.66373 * 4 2 1 10 10 C 1.48272 * 120.12893 * 359.96965 * 9 4 2 11 11 C 1.39304 * 120.13497 * 113.02798 * 10 9 4 12 12 C 1.37963 * 119.96730 * 180.02562 * 11 10 9 13 13 C 1.38679 * 120.24667 * 0.25085 * 12 11 10 14 14 F 1.35102 * 119.86211 * 179.74710 * 13 12 11 15 15 C 1.38336 * 120.27284 * 359.49132 * 13 12 11 16 16 C 1.38705 * 120.02560 * 0.51280 * 15 13 12 17 17 O 1.35663 * 120.12587 * 179.76953 * 16 15 13 18 18 C 1.34814 * 116.99530 * 354.42257 * 17 16 15 19 19 H 1.07998 * 120.00238 * 5.07504 * 18 17 16 20 20 C 1.38644 * 120.00008 * 185.06411 * 18 17 16 21 21 N 1.31566 * 120.00015 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00550 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46866 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47323 * 120.00014 * 22 20 18 25 25 H 1.48493 * 109.47715 * 240.00915 * 22 20 18 26 26 H 1.09001 * 109.47104 * 174.07442 * 1 2 3 27 27 H 1.08999 * 109.46715 * 294.07505 * 1 2 3 28 28 H 1.09005 * 109.46612 * 54.07357 * 1 2 3 29 29 H 1.07997 * 119.93531 * 0.02562 * 5 4 2 30 30 H 1.08000 * 119.86929 * 179.70057 * 6 5 4 31 31 H 1.08002 * 119.93639 * 179.97438 * 7 6 5 32 32 H 1.07994 * 120.07009 * 180.02562 * 8 7 6 33 33 H 1.08002 * 120.01176 * 0.04431 * 11 10 9 34 34 H 1.08004 * 119.87227 * 179.97438 * 12 11 10 35 35 H 1.08001 * 119.98857 * 180.27137 * 15 13 12 36 36 H 0.96996 * 120.00277 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3397 0.0000 4 6 2.2104 -0.5607 -1.6227 5 6 2.4661 0.3518 -2.6263 6 6 2.7712 -0.0870 -3.9020 7 6 2.8278 -1.4414 -4.1786 8 6 2.5803 -2.3628 -3.1818 9 6 2.2720 -1.9265 -1.8939 10 6 2.0049 -2.9116 -0.8185 11 6 0.8753 -3.7246 -0.8795 12 6 0.6299 -4.6397 0.1233 13 6 1.5013 -4.7506 1.1964 14 9 1.2507 -5.6459 2.1768 15 6 2.6289 -3.9521 1.2646 16 6 2.8866 -3.0281 0.2627 17 8 3.9892 -2.2407 0.3298 18 6 4.7327 -2.3231 1.4514 19 1 4.4875 -3.0522 2.2095 20 6 5.8122 -1.4720 1.6317 21 7 6.1107 -0.5835 0.7083 22 14 6.8428 -1.5865 3.1854 23 1 6.3035 -2.6594 4.0591 24 1 8.2484 -1.9021 2.8249 25 1 6.7961 -0.2896 3.9072 26 1 -0.3633 -1.0222 -0.1061 27 1 -0.3633 0.4192 0.9383 28 1 -0.3633 0.6030 -0.8322 29 1 2.4234 1.4102 -2.4161 30 1 2.9659 0.6306 -4.6854 31 1 3.0661 -1.7782 -5.1767 32 1 2.6251 -3.4197 -3.3987 33 1 0.1923 -3.6387 -1.7117 34 1 -0.2465 -5.2690 0.0747 35 1 3.3067 -4.0453 2.1002 36 1 6.8657 0.0122 0.8346 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241339627.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:22 Heat of formation + Delta-G solvation = -54.166663 kcal Electronic energy + Delta-G solvation = -24716.377512 eV Core-core repulsion = 20979.705186 eV Total energy + Delta-G solvation = -3736.672327 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.067 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -48.39854 -39.60571 -38.23671 -36.44724 -35.12950 -32.51336 -31.98521 -30.66470 -29.51409 -28.39146 -28.01415 -25.56317 -23.04143 -22.52399 -21.79350 -20.74741 -18.40440 -17.83378 -17.35554 -16.45950 -15.63944 -15.49832 -15.29434 -15.16007 -14.79904 -14.32651 -14.30580 -14.24070 -13.74631 -13.60976 -13.41135 -13.25939 -13.08714 -12.65406 -12.46198 -12.08557 -12.03737 -11.69844 -11.50390 -11.34001 -11.10026 -10.87742 -10.83231 -10.68510 -10.50738 -9.77678 -9.66477 -9.01247 -8.77551 -8.55831 -8.13308 -7.72142 -7.41920 -6.60572 -4.21885 1.28532 1.59736 1.91263 2.00854 2.41729 3.06784 3.08639 3.14799 3.30464 3.83545 4.03922 4.17146 4.49830 4.73577 4.92059 5.00456 5.09610 5.28146 5.33441 5.44954 5.49234 5.59441 5.63582 5.68287 5.90429 5.97928 6.18182 6.24769 6.26735 6.34199 6.49996 6.69737 6.72903 6.77990 6.79403 6.83333 6.94027 7.16890 7.33616 7.49541 7.79965 8.82052 9.41607 10.53847 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.009319 B = 0.007398 C = 0.005334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3004.033018 B = 3783.738402 C = 5247.766961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.513 4.513 2 S 1.356 4.644 3 O -0.859 6.859 4 C -0.428 4.428 5 C -0.052 4.052 6 C -0.145 4.145 7 C -0.089 4.089 8 C -0.129 4.129 9 C 0.071 3.929 10 C -0.170 4.170 11 C -0.025 4.025 12 C -0.250 4.250 13 C 0.152 3.848 14 F -0.149 7.149 15 C -0.268 4.268 16 C 0.184 3.816 17 O -0.151 6.151 18 C -0.403 4.403 19 H 0.100 0.900 20 C 0.047 3.953 21 N -0.840 5.840 22 Si 0.938 3.062 23 H -0.263 1.263 24 H -0.275 1.275 25 H -0.273 1.273 26 H 0.110 0.890 27 H 0.098 0.902 28 H 0.074 0.926 29 H 0.123 0.877 30 H 0.117 0.883 31 H 0.120 0.880 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.122 0.878 35 H 0.146 0.854 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.630 -4.828 -3.343 10.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.669 4.669 2 S 1.553 4.447 3 O -0.855 6.855 4 C -0.526 4.526 5 C -0.071 4.071 6 C -0.165 4.165 7 C -0.108 4.108 8 C -0.148 4.148 9 C 0.070 3.930 10 C -0.172 4.172 11 C -0.044 4.044 12 C -0.270 4.270 13 C 0.133 3.867 14 F -0.128 7.128 15 C -0.288 4.288 16 C 0.127 3.873 17 O -0.052 6.052 18 C -0.478 4.478 19 H 0.118 0.882 20 C -0.161 4.161 21 N -0.471 5.471 22 Si 0.762 3.238 23 H -0.187 1.187 24 H -0.200 1.200 25 H -0.198 1.198 26 H 0.128 0.872 27 H 0.117 0.883 28 H 0.093 0.907 29 H 0.141 0.859 30 H 0.135 0.865 31 H 0.138 0.862 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.140 0.860 35 H 0.163 0.837 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.736 -4.183 -2.759 9.217 hybrid contribution -0.156 0.950 -0.854 1.287 sum -7.891 -3.233 -3.613 9.262 Atomic orbital electron populations 1.27930 1.25244 1.07551 1.06132 1.71013 0.83636 0.98022 0.92028 1.92981 1.72984 1.37646 1.81880 1.27569 1.10822 0.98554 1.15606 1.20963 0.94511 0.99293 0.92344 1.21116 1.02732 0.95838 0.96770 1.21127 0.97579 0.93238 0.98822 1.21283 1.01368 0.99510 0.92594 1.18079 0.92576 0.90256 0.92130 1.17881 0.98452 1.03877 0.97005 1.20494 0.94580 0.92337 0.96946 1.20454 1.03008 1.06407 0.97091 1.17548 0.94970 0.88395 0.85835 1.91434 1.94144 1.66052 1.61177 1.21002 1.00818 1.02523 1.04438 1.18906 0.86819 0.90017 0.91547 1.84016 1.29057 1.53012 1.39115 1.21487 1.09806 1.20751 0.95781 0.88221 1.25351 0.96927 0.94756 0.99092 1.70049 1.26798 1.17571 1.32684 0.85681 0.79328 0.78954 0.79807 1.18674 1.20021 1.19834 0.87158 0.88333 0.90707 0.85912 0.86459 0.86211 0.85700 0.85679 0.85980 0.83696 0.91506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.51 -7.86 10.70 101.05 1.08 -6.77 16 2 S 1.36 26.93 11.85 -107.50 -1.27 25.65 16 3 O -0.86 -21.25 16.78 -35.23 -0.59 -21.84 16 4 C -0.43 -8.49 5.46 -39.23 -0.21 -8.70 16 5 C -0.05 -1.00 9.44 -39.63 -0.37 -1.38 16 6 C -0.15 -2.38 10.04 -39.51 -0.40 -2.78 16 7 C -0.09 -1.36 10.03 -39.63 -0.40 -1.76 16 8 C -0.13 -2.10 9.75 -39.23 -0.38 -2.48 16 9 C 0.07 1.30 4.90 -104.90 -0.51 0.79 16 10 C -0.17 -3.01 4.54 -104.72 -0.48 -3.49 16 11 C -0.03 -0.37 9.74 -39.29 -0.38 -0.75 16 12 C -0.25 -3.66 10.01 -39.52 -0.40 -4.05 16 13 C 0.15 2.53 7.29 -39.38 -0.29 2.25 16 14 F -0.15 -2.45 17.26 2.25 0.04 -2.41 16 15 C -0.27 -5.00 9.14 -39.37 -0.36 -5.36 16 16 C 0.18 3.73 5.86 -38.75 -0.23 3.50 16 17 O -0.15 -3.67 8.33 0.36 0.00 -3.66 16 18 C -0.40 -9.88 9.49 30.88 0.29 -9.58 16 19 H 0.10 2.22 5.21 -52.49 -0.27 1.95 16 20 C 0.05 1.17 5.49 -17.52 -0.10 1.08 16 21 N -0.84 -23.11 13.67 55.48 0.76 -22.35 16 22 Si 0.94 19.12 29.55 -169.99 -5.02 14.10 16 23 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 24 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 25 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 26 H 0.11 1.46 8.14 -51.92 -0.42 1.03 16 27 H 0.10 1.35 8.14 -51.92 -0.42 0.93 16 28 H 0.07 1.14 8.14 -51.92 -0.42 0.71 16 29 H 0.12 2.43 7.34 -52.49 -0.39 2.05 16 30 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 31 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 32 H 0.13 1.76 8.06 -52.49 -0.42 1.33 16 33 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 35 H 0.15 2.72 5.64 -52.49 -0.30 2.43 16 36 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 331.87 15.07 5.00 5.00 Total: -1.00 -30.84 331.87 -7.69 -38.52 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -3.47 Total: 6.48 kcal Atomic # 6 Polarization: -36.36 SS G_CDS: -3.13 Total: -39.49 kcal Atomic # 7 Polarization: -23.11 SS G_CDS: 0.76 Total: -22.35 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.59 Total: -25.51 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 0.04 Total: -2.41 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.10 kcal Atomic # 16 Polarization: 26.93 SS G_CDS: -1.27 Total: 25.65 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.84 -7.69 -38.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241339627.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.643 kcal (2) G-P(sol) polarization free energy of solvation -30.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds