Wall clock time and date at job start Tue Mar 31 2020 12:18:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81402 * 1
3 3 O 1.42095 * 109.46851 * 2 1
4 4 C 1.76200 * 102.99822 * 109.05864 * 2 1 3
5 5 C 1.38020 * 120.06344 * 94.80213 * 4 2 1
6 6 C 1.38312 * 120.12641 * 179.72134 * 5 4 2
7 7 C 1.38360 * 120.25419 * 0.55173 * 6 5 4
8 8 C 1.37971 * 120.12651 * 359.72271 * 7 6 5
9 9 C 1.39377 * 120.06432 * 275.07199 * 4 2 1
10 10 C 1.48268 * 120.12775 * 0.03012 * 9 4 2
11 11 C 1.39308 * 120.13981 * 76.73709 * 10 9 4
12 12 C 1.37963 * 119.97553 * 179.97438 * 11 10 9
13 13 C 1.38687 * 120.24189 * 359.97438 * 12 11 10
14 14 F 1.35093 * 119.86337 * 180.02562 * 13 12 11
15 15 C 1.38339 * 120.27280 * 0.02562 * 13 12 11
16 16 C 1.38705 * 120.02453 * 359.74683 * 15 13 12
17 17 O 1.35664 * 120.11990 * 180.27505 * 16 15 13
18 18 C 1.34813 * 117.00454 * 354.39597 * 17 16 15
19 19 H 1.08001 * 119.99421 * 5.06716 * 18 17 16
20 20 C 1.38641 * 120.00374 * 185.06902 * 18 17 16
21 21 N 1.31556 * 120.00053 * 184.99672 * 20 18 17
22 22 Si 1.86798 * 120.00066 * 5.00001 * 20 18 17
23 23 H 1.48497 * 109.47161 * 94.96842 * 22 20 18
24 24 H 1.48491 * 109.47372 * 214.97268 * 22 20 18
25 25 H 1.48503 * 109.47128 * 334.97270 * 22 20 18
26 26 H 1.09003 * 109.47163 * 65.77575 * 1 2 3
27 27 H 1.08997 * 109.47503 * 185.78005 * 1 2 3
28 28 H 1.09005 * 109.46980 * 305.78022 * 1 2 3
29 29 H 1.08001 * 119.93932 * 359.97438 * 5 4 2
30 30 H 1.08002 * 119.87220 * 180.27773 * 6 5 4
31 31 H 1.08001 * 119.93526 * 179.74741 * 7 6 5
32 32 H 1.08008 * 120.06551 * 180.02562 * 8 7 6
33 33 H 1.08003 * 120.01017 * 0.02562 * 11 10 9
34 34 H 1.07994 * 119.87908 * 180.02562 * 12 11 10
35 35 H 1.07995 * 119.98375 * 180.02562 * 15 13 12
36 36 H 0.96998 * 119.99998 * 180.02562 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 8 2.2876 1.3397 0.0000
4 6 2.2103 -0.5606 1.6227
5 6 2.4633 -1.8983 1.8496
6 6 2.7801 -2.3389 3.1218
7 6 2.8343 -1.4445 4.1760
8 6 2.5778 -0.1058 3.9621
9 6 2.2635 0.3451 2.6808
10 6 1.9862 1.7823 2.4448
11 6 0.6753 2.2240 2.2802
12 6 0.4212 3.5622 2.0612
13 6 1.4667 4.4717 2.0047
14 9 1.2091 5.7804 1.7905
15 6 2.7724 4.0442 2.1668
16 6 3.0403 2.7021 2.3922
17 8 4.3196 2.2816 2.5570
18 6 5.2929 3.1965 2.3755
19 1 5.0356 4.2293 2.1919
20 6 6.6239 2.8118 2.4244
21 7 7.5740 3.7184 2.3456
22 14 7.0684 1.0062 2.6022
23 1 7.3163 0.4229 1.2592
24 1 8.2932 0.8772 3.4317
25 1 5.9487 0.2829 3.2568
26 1 -0.3634 0.4217 -0.9372
27 1 -0.3634 -1.0224 0.1035
28 1 -0.3633 0.6009 0.8338
29 1 2.4177 -2.6018 1.0314
30 1 2.9817 -3.3859 3.2938
31 1 3.0783 -1.7948 5.1680
32 1 2.6208 0.5917 4.7857
33 1 -0.1418 1.5192 2.3247
34 1 -0.5957 3.9030 1.9342
35 1 3.5829 4.7564 2.1224
36 1 8.5053 3.4492 2.3795
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001241339637.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:18:27
Heat of formation + Delta-G solvation = -42.029029 kcal
Electronic energy + Delta-G solvation = -24954.445598 eV
Core-core repulsion = 21218.299599 eV
Total energy + Delta-G solvation = -3736.145999 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 320.067 amu
Computer time = 1.11 seconds
Orbital eigenvalues (eV)
-48.26267 -39.61915 -38.31571 -36.44211 -35.19418 -32.44589 -32.01602 -30.88608
-29.61559 -28.56509 -28.09729 -25.32458 -23.09606 -22.60385 -21.69031 -20.80232
-18.11825 -17.92868 -17.53370 -16.51002 -15.73553 -15.50778 -15.26999 -15.20652
-14.86056 -14.43730 -14.40555 -14.05736 -13.87538 -13.66792 -13.55506 -13.22081
-13.01224 -12.56734 -12.53928 -12.35555 -12.15106 -11.87317 -11.50491 -11.38405
-11.12780 -10.81906 -10.70367 -10.69971 -10.26020 -9.83033 -9.53842 -8.95942
-8.87372 -8.58060 -8.17246 -7.97655 -7.32983 -6.43708 -4.09559 1.15800
1.53188 1.87662 2.16177 2.18207 2.96752 3.19618 3.23810 3.40498
3.87096 4.22616 4.26788 4.30826 4.69515 4.94714 5.02939 5.05314
5.07461 5.20451 5.28316 5.36136 5.46139 5.55818 5.68434 5.71864
6.01305 6.03937 6.12887 6.15900 6.30531 6.39174 6.57257 6.64401
6.75874 6.85795 6.89430 7.05569 7.18178 7.54643 7.75790 7.99290
8.91148 9.51198 10.63661
Molecular weight = 320.07amu
Principal moments of inertia in cm(-1)
A = 0.009564 B = 0.008188 C = 0.005416
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2926.857763 B = 3418.851518 C = 5168.916354
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.507 4.507
2 S 1.312 4.688
3 O -0.812 6.812
4 C -0.453 4.453
5 C -0.050 4.050
6 C -0.147 4.147
7 C -0.087 4.087
8 C -0.117 4.117
9 C 0.059 3.941
10 C -0.132 4.132
11 C -0.049 4.049
12 C -0.235 4.235
13 C 0.144 3.856
14 F -0.151 7.151
15 C -0.250 4.250
16 C 0.225 3.775
17 O -0.198 6.198
18 C -0.388 4.388
19 H 0.106 0.894
20 C 0.068 3.932
21 N -0.875 5.875
22 Si 0.897 3.103
23 H -0.272 1.272
24 H -0.281 1.281
25 H -0.254 1.254
26 H 0.098 0.902
27 H 0.103 0.897
28 H 0.086 0.914
29 H 0.132 0.868
30 H 0.122 0.878
31 H 0.121 0.879
32 H 0.123 0.877
33 H 0.118 0.882
34 H 0.119 0.881
35 H 0.145 0.855
36 H 0.280 0.720
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.835 -14.311 -2.506 19.386
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.663 4.663
2 S 1.507 4.493
3 O -0.807 6.807
4 C -0.549 4.549
5 C -0.069 4.069
6 C -0.166 4.166
7 C -0.105 4.105
8 C -0.136 4.136
9 C 0.058 3.942
10 C -0.134 4.134
11 C -0.067 4.067
12 C -0.254 4.254
13 C 0.125 3.875
14 F -0.129 7.129
15 C -0.270 4.270
16 C 0.171 3.829
17 O -0.101 6.101
18 C -0.464 4.464
19 H 0.124 0.876
20 C -0.136 4.136
21 N -0.512 5.512
22 Si 0.722 3.278
23 H -0.198 1.198
24 H -0.207 1.207
25 H -0.177 1.177
26 H 0.117 0.883
27 H 0.122 0.878
28 H 0.105 0.895
29 H 0.150 0.850
30 H 0.140 0.860
31 H 0.139 0.861
32 H 0.141 0.859
33 H 0.136 0.864
34 H 0.137 0.863
35 H 0.162 0.838
36 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -11.875 -14.157 -3.180 18.750
hybrid contribution -0.439 1.000 1.723 2.040
sum -12.314 -13.157 -1.457 18.079
Atomic orbital electron populations
1.27969 1.23901 1.07224 1.07172 1.69538 0.86025 1.01454 0.92250
1.93358 1.71573 1.35513 1.80256 1.27879 1.12053 0.99247 1.15716
1.20679 0.95830 0.93406 0.96957 1.21182 1.02602 0.99487 0.93366
1.21198 0.96956 0.93365 0.99029 1.21387 0.99701 0.95674 0.96878
1.18478 0.92145 0.91310 0.92256 1.17683 0.91910 0.90736 1.13040
1.20343 0.93914 0.94641 0.97789 1.20340 0.97571 0.93197 1.14337
1.17449 0.93631 0.77117 0.99330 1.91414 1.94997 1.34184 1.92336
1.21049 0.95752 0.97236 1.12984 1.18381 0.84674 0.90151 0.89719
1.83603 1.11116 1.39182 1.76171 1.20780 0.84351 0.90914 1.50308
0.87629 1.24431 0.93941 0.99679 0.95542 1.69653 1.00434 1.33667
1.47450 0.86264 0.78561 0.83976 0.78995 1.19758 1.20692 1.17748
0.88307 0.87831 0.89479 0.85049 0.85993 0.86097 0.85909 0.86447
0.86324 0.83799 0.91001
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.51 -5.33 10.63 101.05 1.07 -4.25 16
2 S 1.31 17.20 13.77 -107.50 -1.48 15.72 16
3 O -0.81 -16.72 14.15 -35.23 -0.50 -17.21 16
4 C -0.45 -6.97 5.62 -39.24 -0.22 -7.19 16
5 C -0.05 -0.60 9.74 -39.63 -0.39 -0.98 16
6 C -0.15 -1.83 10.04 -39.51 -0.40 -2.22 16
7 C -0.09 -1.25 10.03 -39.63 -0.40 -1.65 16
8 C -0.12 -2.06 9.78 -39.24 -0.38 -2.44 16
9 C 0.06 1.11 4.82 -104.91 -0.51 0.61 16
10 C -0.13 -2.78 2.92 -104.72 -0.31 -3.09 16
11 C -0.05 -0.90 8.00 -39.28 -0.31 -1.22 16
12 C -0.23 -4.51 10.01 -39.52 -0.40 -4.91 16
13 C 0.14 3.14 7.30 -39.38 -0.29 2.86 16
14 F -0.15 -3.16 17.26 2.25 0.04 -3.12 16
15 C -0.25 -6.12 9.14 -39.37 -0.36 -6.48 16
16 C 0.23 5.60 5.89 -38.75 -0.23 5.37 16
17 O -0.20 -5.43 8.05 0.36 0.00 -5.43 16
18 C -0.39 -11.40 9.94 30.88 0.31 -11.09 16
19 H 0.11 3.21 5.44 -52.49 -0.29 2.93 16
20 C 0.07 1.96 5.49 -17.52 -0.10 1.86 16
21 N -0.87 -25.86 13.96 55.48 0.77 -25.09 16
22 Si 0.90 22.14 28.62 -169.99 -4.87 17.27 16
23 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16
24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16
25 H -0.25 -6.29 7.11 56.52 0.40 -5.88 16
26 H 0.10 0.95 8.14 -51.92 -0.42 0.52 16
27 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16
28 H 0.09 1.09 5.06 -51.92 -0.26 0.82 16
29 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16
30 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16
31 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16
32 H 0.12 2.13 8.06 -52.48 -0.42 1.71 16
33 H 0.12 1.81 6.30 -52.48 -0.33 1.48 16
34 H 0.12 1.93 8.06 -52.49 -0.42 1.51 16
35 H 0.14 3.68 5.64 -52.49 -0.30 3.38 16
36 H 0.28 7.61 8.31 -40.82 -0.34 7.27 16
LS Contribution 323.79 15.07 4.88 4.88
Total: -1.00 -36.62 323.79 -7.31 -43.93
By element:
Atomic # 1 Polarization: 7.14 SS G_CDS: -3.27 Total: 3.87 kcal
Atomic # 6 Polarization: -31.93 SS G_CDS: -2.90 Total: -34.82 kcal
Atomic # 7 Polarization: -25.86 SS G_CDS: 0.77 Total: -25.09 kcal
Atomic # 8 Polarization: -22.15 SS G_CDS: -0.50 Total: -22.64 kcal
Atomic # 9 Polarization: -3.16 SS G_CDS: 0.04 Total: -3.12 kcal
Atomic # 14 Polarization: 22.14 SS G_CDS: -4.87 Total: 17.27 kcal
Atomic # 16 Polarization: 17.20 SS G_CDS: -1.48 Total: 15.72 kcal
Total LS contribution 4.88 Total: 4.88 kcal
Total: -36.62 -7.31 -43.93 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001241339637.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 1.903 kcal
(2) G-P(sol) polarization free energy of solvation -36.618 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.715 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.314 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.932 kcal
(6) G-S(sol) free energy of system = (1) + (5) -42.029 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.11 seconds