Wall clock time and date at job start Tue Mar 31 2020 12:18:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81402 * 1
3 3 O 1.42095 * 109.46851 * 2 1
4 4 C 1.76200 * 102.99822 * 109.05864 * 2 1 3
5 5 C 1.38020 * 120.06344 * 94.80213 * 4 2 1
6 6 C 1.38312 * 120.12641 * 179.72134 * 5 4 2
7 7 C 1.38360 * 120.25419 * 0.55173 * 6 5 4
8 8 C 1.37971 * 120.12651 * 359.72271 * 7 6 5
9 9 C 1.39377 * 120.06432 * 275.07199 * 4 2 1
10 10 C 1.48268 * 120.12775 * 0.03012 * 9 4 2
11 11 C 1.39308 * 120.13981 * 76.73709 * 10 9 4
12 12 C 1.37963 * 119.97553 * 179.97438 * 11 10 9
13 13 C 1.38687 * 120.24189 * 359.97438 * 12 11 10
14 14 F 1.35093 * 119.86337 * 180.02562 * 13 12 11
15 15 C 1.38339 * 120.27280 * 0.02562 * 13 12 11
16 16 C 1.38705 * 120.02453 * 359.74683 * 15 13 12
17 17 O 1.35664 * 120.11990 * 180.27505 * 16 15 13
18 18 C 1.34813 * 117.00454 * 354.39597 * 17 16 15
19 19 H 1.08001 * 119.99421 * 5.06716 * 18 17 16
20 20 C 1.38641 * 120.00374 * 185.06902 * 18 17 16
21 21 N 1.31556 * 120.00053 * 184.99672 * 20 18 17
22 22 Si 1.86798 * 120.00066 * 5.00001 * 20 18 17
23 23 H 1.48497 * 109.47161 * 94.96842 * 22 20 18
24 24 H 1.48491 * 109.47372 * 214.97268 * 22 20 18
25 25 H 1.48503 * 109.47128 * 334.97270 * 22 20 18
26 26 H 1.09003 * 109.47163 * 65.77575 * 1 2 3
27 27 H 1.08997 * 109.47503 * 185.78005 * 1 2 3
28 28 H 1.09005 * 109.46980 * 305.78022 * 1 2 3
29 29 H 1.08001 * 119.93932 * 359.97438 * 5 4 2
30 30 H 1.08002 * 119.87220 * 180.27773 * 6 5 4
31 31 H 1.08001 * 119.93526 * 179.74741 * 7 6 5
32 32 H 1.08008 * 120.06551 * 180.02562 * 8 7 6
33 33 H 1.08003 * 120.01017 * 0.02562 * 11 10 9
34 34 H 1.07994 * 119.87908 * 180.02562 * 12 11 10
35 35 H 1.07995 * 119.98375 * 180.02562 * 15 13 12
36 36 H 0.96998 * 119.99998 * 180.02562 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 8 2.2876 1.3397 0.0000
4 6 2.2103 -0.5606 1.6227
5 6 2.4633 -1.8983 1.8496
6 6 2.7801 -2.3389 3.1218
7 6 2.8343 -1.4445 4.1760
8 6 2.5778 -0.1058 3.9621
9 6 2.2635 0.3451 2.6808
10 6 1.9862 1.7823 2.4448
11 6 0.6753 2.2240 2.2802
12 6 0.4212 3.5622 2.0612
13 6 1.4667 4.4717 2.0047
14 9 1.2091 5.7804 1.7905
15 6 2.7724 4.0442 2.1668
16 6 3.0403 2.7021 2.3922
17 8 4.3196 2.2816 2.5570
18 6 5.2929 3.1965 2.3755
19 1 5.0356 4.2293 2.1919
20 6 6.6239 2.8118 2.4244
21 7 7.5740 3.7184 2.3456
22 14 7.0684 1.0062 2.6022
23 1 7.3163 0.4229 1.2592
24 1 8.2932 0.8772 3.4317
25 1 5.9487 0.2829 3.2568
26 1 -0.3634 0.4217 -0.9372
27 1 -0.3634 -1.0224 0.1035
28 1 -0.3633 0.6009 0.8338
29 1 2.4177 -2.6018 1.0314
30 1 2.9817 -3.3859 3.2938
31 1 3.0783 -1.7948 5.1680
32 1 2.6208 0.5917 4.7857
33 1 -0.1418 1.5192 2.3247
34 1 -0.5957 3.9030 1.9342
35 1 3.5829 4.7564 2.1224
36 1 8.5053 3.4492 2.3795
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001241339637.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:18:26
Heat of formation + Delta-G solvation = -67.127277 kcal
Electronic energy + Delta-G solvation = -24955.533940 eV
Core-core repulsion = 21218.299599 eV
Total energy + Delta-G solvation = -3737.234341 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 320.067 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-49.99819 -41.24674 -39.67509 -38.16933 -36.53019 -34.57009 -33.41462 -31.96743
-31.31202 -29.59692 -29.47776 -27.39127 -24.52270 -23.74552 -23.42451 -22.26936
-20.11513 -19.60997 -18.83489 -17.75886 -17.41752 -17.05435 -16.88062 -16.73528
-16.27447 -15.95422 -15.69685 -15.55838 -15.47034 -15.23209 -15.10622 -14.69752
-14.44344 -14.14111 -13.97958 -13.53828 -13.45099 -13.32153 -13.00939 -12.79576
-12.53066 -12.43483 -12.27926 -12.23741 -11.97821 -11.62920 -11.03068 -10.98550
-10.09982 -9.84785 -9.64704 -9.27816 -9.01285 -8.59673 -6.32795 0.01424
0.14754 0.43170 0.50144 1.14166 1.21292 1.27544 1.45584 1.97265
2.21232 2.49615 2.76957 2.82589 2.98224 3.25191 3.27010 3.62454
3.83486 4.04527 4.11215 4.18962 4.33198 4.42009 4.52961 4.58546
4.63884 4.70314 4.85959 4.97625 5.09110 5.11481 5.22259 5.24670
5.29811 5.40167 5.49085 5.55811 5.59796 5.74582 6.02333 6.10775
6.73235 7.43390 8.52466
Molecular weight = 320.07amu
Principal moments of inertia in cm(-1)
A = 0.009564 B = 0.008188 C = 0.005416
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2926.857763 B = 3418.851518 C = 5168.916354
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.496 4.496
2 S 1.356 4.644
3 O -0.897 6.897
4 C -0.464 4.464
5 C -0.039 4.039
6 C -0.138 4.138
7 C -0.094 4.094
8 C -0.147 4.147
9 C 0.012 3.988
10 C -0.110 4.110
11 C -0.047 4.047
12 C -0.209 4.209
13 C 0.125 3.875
14 F -0.149 7.149
15 C -0.279 4.279
16 C 0.191 3.809
17 O -0.218 6.218
18 C -0.405 4.405
19 H 0.070 0.930
20 C 0.015 3.985
21 N -0.919 5.919
22 Si 0.966 3.034
23 H -0.260 1.260
24 H -0.261 1.261
25 H -0.257 1.257
26 H 0.112 0.888
27 H 0.147 0.853
28 H 0.072 0.928
29 H 0.190 0.810
30 H 0.167 0.833
31 H 0.144 0.856
32 H 0.103 0.897
33 H 0.162 0.838
34 H 0.161 0.839
35 H 0.112 0.888
36 H 0.287 0.713
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.635 -19.511 -3.095 25.193
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.654 4.654
2 S 1.554 4.446
3 O -0.893 6.893
4 C -0.559 4.559
5 C -0.057 4.057
6 C -0.157 4.157
7 C -0.112 4.112
8 C -0.166 4.166
9 C 0.011 3.989
10 C -0.112 4.112
11 C -0.065 4.065
12 C -0.228 4.228
13 C 0.106 3.894
14 F -0.128 7.128
15 C -0.299 4.299
16 C 0.140 3.860
17 O -0.123 6.123
18 C -0.481 4.481
19 H 0.088 0.912
20 C -0.184 4.184
21 N -0.559 5.559
22 Si 0.787 3.213
23 H -0.185 1.185
24 H -0.186 1.186
25 H -0.181 1.181
26 H 0.130 0.870
27 H 0.165 0.835
28 H 0.091 0.909
29 H 0.207 0.793
30 H 0.184 0.816
31 H 0.162 0.838
32 H 0.121 0.879
33 H 0.179 0.821
34 H 0.178 0.822
35 H 0.130 0.870
36 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges -14.693 -19.336 -3.768 24.575
hybrid contribution 0.057 2.541 1.868 3.154
sum -14.636 -16.795 -1.900 22.358
Atomic orbital electron populations
1.27842 1.20277 1.09983 1.07269 1.68406 0.87291 0.98568 0.90332
1.93253 1.75134 1.39190 1.81692 1.28103 1.12439 1.00403 1.15004
1.21402 0.92879 0.92698 0.98764 1.21776 1.00031 1.01216 0.92631
1.21552 0.96237 0.92180 1.01196 1.21404 1.01793 0.97286 0.96141
1.18552 0.96003 0.90311 0.94047 1.18151 0.91565 0.92145 1.09323
1.20907 0.94223 0.95194 0.96139 1.20874 0.98530 0.92869 1.10554
1.17589 0.93360 0.77860 1.00596 1.91407 1.94838 1.34092 1.92425
1.21047 0.96489 0.97290 1.15060 1.18954 0.84856 0.91100 0.91131
1.83550 1.11670 1.38337 1.78766 1.20662 0.85785 0.90211 1.51473
0.91241 1.25306 0.93403 1.04549 0.95128 1.69740 1.01016 1.35811
1.49327 0.85268 0.78502 0.77947 0.79608 1.18508 1.18582 1.18136
0.86970 0.83465 0.90940 0.79278 0.81596 0.83835 0.87922 0.82089
0.82173 0.87029 0.90324
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.50 -7.99 10.63 113.37 1.20 -6.78 16
2 S 1.36 31.97 13.77 -56.49 -0.78 31.19 16
3 O -0.90 -37.21 14.15 -148.98 -2.11 -39.32 16
4 C -0.46 -12.84 5.62 22.49 0.13 -12.71 16
5 C -0.04 -0.72 9.74 22.24 0.22 -0.51 16
6 C -0.14 -2.65 10.04 22.32 0.22 -2.43 16
7 C -0.09 -2.40 10.03 22.24 0.22 -2.18 16
8 C -0.15 -5.08 9.78 22.49 0.22 -4.86 16
9 C 0.01 0.44 4.82 -20.05 -0.10 0.34 16
10 C -0.11 -4.71 2.92 -19.93 -0.06 -4.77 16
11 C -0.05 -1.67 8.00 22.46 0.18 -1.49 16
12 C -0.21 -7.76 10.01 22.31 0.22 -7.54 16
13 C 0.13 5.68 7.30 22.40 0.16 5.84 16
14 F -0.15 -6.47 17.26 44.97 0.78 -5.70 16
15 C -0.28 -14.87 9.14 22.41 0.20 -14.66 16
16 C 0.19 10.13 5.89 22.81 0.13 10.27 16
17 O -0.22 -12.82 8.05 -21.62 -0.17 -13.00 16
18 C -0.41 -25.92 9.94 67.92 0.67 -25.25 16
19 H 0.07 4.78 5.44 -2.91 -0.02 4.76 16
20 C 0.02 0.92 5.49 84.83 0.47 1.39 16
21 N -0.92 -57.54 13.96 21.61 0.30 -57.24 16
22 Si 0.97 47.09 28.62 68.60 1.96 49.05 16
23 H -0.26 -12.04 7.11 99.48 0.71 -11.34 16
24 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16
25 H -0.26 -12.54 7.11 99.48 0.71 -11.84 16
26 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16
27 H 0.15 1.15 8.14 -2.39 -0.02 1.13 16
28 H 0.07 1.46 5.06 -2.39 -0.01 1.45 16
29 H 0.19 1.24 8.06 -2.91 -0.02 1.22 16
30 H 0.17 1.78 8.06 -2.91 -0.02 1.75 16
31 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16
32 H 0.10 3.75 8.06 -2.91 -0.02 3.73 16
33 H 0.16 4.34 6.30 -2.91 -0.02 4.32 16
34 H 0.16 4.61 8.06 -2.91 -0.02 4.58 16
35 H 0.11 6.53 5.64 -2.91 -0.02 6.51 16
36 H 0.29 16.30 8.31 -92.71 -0.77 15.53 16
Total: -1.00 -90.30 323.79 5.22 -85.09
By element:
Atomic # 1 Polarization: 14.13 SS G_CDS: 1.13 Total: 15.26 kcal
Atomic # 6 Polarization: -69.44 SS G_CDS: 4.11 Total: -65.34 kcal
Atomic # 7 Polarization: -57.54 SS G_CDS: 0.30 Total: -57.24 kcal
Atomic # 8 Polarization: -50.03 SS G_CDS: -2.28 Total: -52.31 kcal
Atomic # 9 Polarization: -6.47 SS G_CDS: 0.78 Total: -5.70 kcal
Atomic # 14 Polarization: 47.09 SS G_CDS: 1.96 Total: 49.05 kcal
Atomic # 16 Polarization: 31.97 SS G_CDS: -0.78 Total: 31.19 kcal
Total: -90.30 5.22 -85.09 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001241339637.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 17.958 kcal
(2) G-P(sol) polarization free energy of solvation -90.304 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.346 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.219 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.085 kcal
(6) G-S(sol) free energy of system = (1) + (5) -67.127 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds