Wall clock time and date at job start Tue Mar 31 2020 12:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42104 * 109.47182 * 2 1 4 4 C 1.76198 * 103.00053 * 250.94756 * 2 1 3 5 5 C 1.38338 * 119.87338 * 89.99810 * 4 2 1 6 6 C 1.38006 * 120.12894 * 180.02562 * 5 4 2 7 7 C 1.39409 * 119.86839 * 359.97438 * 6 5 4 8 8 C 1.48268 * 120.12310 * 180.02562 * 7 6 5 9 9 C 1.39305 * 120.13430 * 310.00185 * 8 7 6 10 10 C 1.37968 * 119.96952 * 179.97438 * 9 8 7 11 11 C 1.38691 * 120.24368 * 0.02562 * 10 9 8 12 12 F 1.35102 * 119.86234 * 179.97438 * 11 10 9 13 13 C 1.38336 * 120.26985 * 359.95160 * 11 10 9 14 14 C 1.38704 * 120.02814 * 0.02904 * 13 11 10 15 15 O 1.35662 * 120.12302 * 179.97438 * 14 13 11 16 16 C 1.34817 * 116.99573 * 354.40880 * 15 14 13 17 17 H 1.07995 * 120.00323 * 5.06943 * 16 15 14 18 18 C 1.38651 * 119.99878 * 185.07466 * 16 15 14 19 19 N 1.31565 * 119.99623 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00075 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47124 * 60.00074 * 20 18 16 22 22 H 1.48504 * 109.46736 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47225 * 299.99723 * 20 18 16 24 24 C 1.39397 * 119.74636 * 0.27722 * 7 6 5 25 25 C 1.38005 * 119.87172 * 359.44737 * 24 7 6 26 26 H 1.09010 * 109.46742 * 169.05459 * 1 2 3 27 27 H 1.08999 * 109.46891 * 289.05099 * 1 2 3 28 28 H 1.08992 * 109.47554 * 49.05587 * 1 2 3 29 29 H 1.08002 * 119.93552 * 359.97438 * 5 4 2 30 30 H 1.08000 * 120.06201 * 179.97438 * 6 5 4 31 31 H 1.07996 * 120.01743 * 359.95223 * 9 8 7 32 32 H 1.07994 * 119.87826 * 179.97438 * 10 9 8 33 33 H 1.07996 * 119.98073 * 179.75361 * 13 11 10 34 34 H 0.97002 * 119.99380 * 180.02562 * 19 18 16 35 35 H 1.08001 * 120.06477 * 179.69958 * 24 7 6 36 36 H 1.08000 * 119.93438 * 180.25548 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3398 0.0000 4 6 2.2104 -0.5604 -1.6228 5 6 2.3653 0.3543 -2.6490 6 6 2.6753 -0.0789 -3.9221 7 6 2.8327 -1.4412 -4.1728 8 6 3.1662 -1.9128 -5.5384 9 6 2.4243 -1.4710 -6.6315 10 6 2.7380 -1.9115 -7.9008 11 6 3.7902 -2.7943 -8.0937 12 9 4.0903 -3.2212 -9.3398 13 6 4.5338 -3.2391 -7.0153 14 6 4.2285 -2.8031 -5.7345 15 8 4.9563 -3.2384 -4.6756 16 6 5.8876 -4.1822 -4.9196 17 1 6.0837 -4.4979 -5.9335 18 6 6.5935 -4.7475 -3.8687 19 7 6.3548 -4.3626 -2.6334 20 14 7.8834 -6.0557 -4.2066 21 1 8.9392 -5.4940 -5.0870 22 1 8.4906 -6.4949 -2.9245 23 1 7.2463 -7.2175 -4.8769 24 6 2.6701 -2.3586 -3.1360 25 6 2.3658 -1.9134 -1.8657 26 1 -0.3633 -1.0091 -0.1951 27 1 -0.3633 0.3354 0.9714 28 1 -0.3634 0.6734 -0.7762 29 1 2.2427 1.4094 -2.4536 30 1 2.7956 0.6361 -4.7225 31 1 1.6037 -0.7842 -6.4855 32 1 2.1616 -1.5684 -8.7471 33 1 5.3496 -3.9295 -7.1704 34 1 6.8490 -4.7578 -1.8983 35 1 2.7861 -3.4155 -3.3255 36 1 2.2438 -2.6230 -1.0607 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241483183.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:32 Heat of formation + Delta-G solvation = -60.018679 kcal Electronic energy + Delta-G solvation = -23541.507425 eV Core-core repulsion = 19804.581336 eV Total energy + Delta-G solvation = -3736.926089 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.067 amu Computer time = 2.46 seconds Orbital eigenvalues (eV) -48.40742 -39.59207 -38.19645 -36.42545 -35.58422 -32.53685 -32.01999 -30.56553 -29.50597 -28.85791 -28.03004 -25.59388 -23.15649 -22.54333 -21.60125 -20.74334 -18.41401 -17.88322 -17.59681 -16.63054 -15.79079 -15.53726 -15.31681 -15.14127 -14.75684 -14.69816 -14.35659 -14.13469 -13.73163 -13.63404 -13.49976 -13.39274 -13.02225 -12.94577 -12.58632 -12.39946 -12.12099 -11.84196 -11.69730 -11.34368 -11.10261 -10.95904 -10.84270 -10.65962 -10.55961 -10.05673 -9.71361 -9.03743 -8.93276 -8.50989 -8.32259 -8.02529 -7.37679 -6.64814 -4.23841 1.05866 1.79381 1.85675 2.02751 2.14844 2.85771 3.04464 3.04549 3.07576 3.80384 3.90453 4.10297 4.31504 4.73605 4.89392 5.02398 5.13776 5.15438 5.22513 5.28060 5.37258 5.46982 5.62262 5.77695 5.90153 5.91847 6.02301 6.19736 6.28328 6.42705 6.44365 6.66499 6.71542 6.77284 6.85286 6.86991 7.05594 7.19070 7.38647 7.50905 7.77795 8.78929 9.41004 10.50513 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.010853 B = 0.004496 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.340743 B = 6226.532406 C = 8466.505198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.500 4.500 2 S 1.330 4.670 3 O -0.865 6.865 4 C -0.472 4.472 5 C -0.058 4.058 6 C -0.135 4.135 7 C 0.029 3.971 8 C -0.153 4.153 9 C -0.030 4.030 10 C -0.250 4.250 11 C 0.148 3.852 12 F -0.150 7.150 13 C -0.271 4.271 14 C 0.187 3.813 15 O -0.150 6.150 16 C -0.400 4.400 17 H 0.094 0.906 18 C 0.047 3.953 19 N -0.847 5.847 20 Si 0.941 3.059 21 H -0.269 1.269 22 H -0.276 1.276 23 H -0.268 1.268 24 C -0.097 4.097 25 C -0.039 4.039 26 H 0.109 0.891 27 H 0.100 0.900 28 H 0.078 0.922 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.142 0.858 34 H 0.274 0.726 35 H 0.132 0.868 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.388 1.683 3.093 10.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.656 4.656 2 S 1.528 4.472 3 O -0.861 6.861 4 C -0.570 4.570 5 C -0.077 4.077 6 C -0.154 4.154 7 C 0.029 3.971 8 C -0.155 4.155 9 C -0.048 4.048 10 C -0.270 4.270 11 C 0.129 3.871 12 F -0.129 7.129 13 C -0.291 4.291 14 C 0.131 3.869 15 O -0.051 6.051 16 C -0.475 4.475 17 H 0.111 0.889 18 C -0.160 4.160 19 N -0.479 5.479 20 Si 0.765 3.235 21 H -0.194 1.194 22 H -0.200 1.200 23 H -0.193 1.193 24 C -0.116 4.116 25 C -0.059 4.059 26 H 0.128 0.872 27 H 0.119 0.881 28 H 0.097 0.903 29 H 0.137 0.863 30 H 0.138 0.862 31 H 0.142 0.858 32 H 0.139 0.861 33 H 0.160 0.840 34 H 0.084 0.916 35 H 0.150 0.850 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.672 1.945 4.317 9.880 hybrid contribution 0.007 0.485 -2.414 2.463 sum -8.665 2.430 1.903 9.198 Atomic orbital electron populations 1.27797 1.23444 1.07703 1.06666 1.69391 0.85382 0.99152 0.93269 1.93066 1.73043 1.37380 1.82598 1.27288 1.14703 0.99756 1.15250 1.20838 0.95826 0.98711 0.92372 1.21226 1.02436 0.94921 0.96826 1.18769 0.93285 0.92665 0.92364 1.17908 0.99661 1.05414 0.92513 1.20529 0.97208 0.96649 0.90417 1.20458 1.02332 1.06218 0.97968 1.17542 0.95472 0.95533 0.78578 1.91425 1.92820 1.88655 1.39968 1.20994 1.06400 1.10089 0.91580 1.18921 0.89485 0.91434 0.87095 1.84001 1.42776 1.49419 1.28875 1.21366 1.14938 1.16049 0.95185 0.88877 1.25302 0.98219 0.98118 0.94316 1.70026 1.39162 1.40084 0.98611 0.85767 0.79674 0.79742 0.78287 1.19371 1.20031 1.19305 1.21374 0.97784 1.00296 0.92160 1.20689 0.95177 0.93133 0.96872 0.87213 0.88139 0.90310 0.86273 0.86238 0.85796 0.86059 0.84047 0.91568 0.84993 0.84988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -4.63 10.70 101.05 1.08 -3.54 16 2 S 1.33 15.12 14.18 -107.50 -1.52 13.60 16 3 O -0.87 -15.26 16.89 -35.23 -0.59 -15.86 16 4 C -0.47 -7.15 5.62 -39.51 -0.22 -7.37 16 5 C -0.06 -0.99 9.43 -39.63 -0.37 -1.37 16 6 C -0.13 -2.37 9.51 -39.23 -0.37 -2.75 16 7 C 0.03 0.56 5.27 -104.91 -0.55 0.01 16 8 C -0.15 -3.05 5.49 -104.72 -0.57 -3.62 16 9 C -0.03 -0.51 9.50 -39.28 -0.37 -0.88 16 10 C -0.25 -4.26 10.01 -39.51 -0.40 -4.65 16 11 C 0.15 2.82 7.30 -39.38 -0.29 2.54 16 12 F -0.15 -2.75 17.26 2.25 0.04 -2.71 16 13 C -0.27 -5.73 9.14 -39.37 -0.36 -6.09 16 14 C 0.19 4.23 6.56 -38.76 -0.25 3.97 16 15 O -0.15 -3.87 8.13 0.36 0.00 -3.86 16 16 C -0.40 -10.31 9.49 30.89 0.29 -10.01 16 17 H 0.09 2.25 5.20 -52.49 -0.27 1.98 16 18 C 0.05 1.19 5.49 -17.51 -0.10 1.10 16 19 N -0.85 -22.48 13.67 55.48 0.76 -21.73 16 20 Si 0.94 19.15 29.55 -169.99 -5.02 14.13 16 21 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 22 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 23 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 24 C -0.10 -1.81 8.79 -39.24 -0.34 -2.15 16 25 C -0.04 -0.60 9.74 -39.63 -0.39 -0.99 16 26 H 0.11 0.80 8.14 -51.92 -0.42 0.38 16 27 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.12 2.01 7.44 -52.49 -0.39 1.62 16 30 H 0.12 1.89 8.04 -52.49 -0.42 1.47 16 31 H 0.12 1.75 8.04 -52.49 -0.42 1.33 16 32 H 0.12 1.75 8.06 -52.49 -0.42 1.32 16 33 H 0.14 3.00 5.63 -52.49 -0.30 2.71 16 34 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 35 H 0.13 2.62 7.71 -52.49 -0.40 2.21 16 36 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 333.95 15.07 5.03 5.03 Total: -1.00 -32.96 333.95 -7.99 -40.95 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -3.46 Total: 6.26 kcal Atomic # 6 Polarization: -32.59 SS G_CDS: -3.22 Total: -35.81 kcal Atomic # 7 Polarization: -22.48 SS G_CDS: 0.76 Total: -21.73 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.59 Total: -19.72 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.04 Total: -2.71 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.13 kcal Atomic # 16 Polarization: 15.12 SS G_CDS: -1.52 Total: 13.60 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.96 -7.99 -40.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241483183.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.072 kcal (2) G-P(sol) polarization free energy of solvation -32.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.46 seconds