Wall clock time and date at job start Tue Mar 31 2020 12:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42104 * 109.47182 * 2 1 4 4 C 1.76198 * 103.00053 * 250.94756 * 2 1 3 5 5 C 1.38338 * 119.87338 * 89.99810 * 4 2 1 6 6 C 1.38006 * 120.12894 * 180.02562 * 5 4 2 7 7 C 1.39409 * 119.86839 * 359.97438 * 6 5 4 8 8 C 1.48268 * 120.12310 * 180.02562 * 7 6 5 9 9 C 1.39305 * 120.13430 * 310.00185 * 8 7 6 10 10 C 1.37968 * 119.96952 * 179.97438 * 9 8 7 11 11 C 1.38691 * 120.24368 * 0.02562 * 10 9 8 12 12 F 1.35102 * 119.86234 * 179.97438 * 11 10 9 13 13 C 1.38336 * 120.26985 * 359.95160 * 11 10 9 14 14 C 1.38704 * 120.02814 * 0.02904 * 13 11 10 15 15 O 1.35662 * 120.12302 * 179.97438 * 14 13 11 16 16 C 1.34817 * 116.99573 * 354.40880 * 15 14 13 17 17 H 1.07995 * 120.00323 * 5.06943 * 16 15 14 18 18 C 1.38651 * 119.99878 * 185.07466 * 16 15 14 19 19 N 1.31565 * 119.99623 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00075 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47124 * 60.00074 * 20 18 16 22 22 H 1.48504 * 109.46736 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47225 * 299.99723 * 20 18 16 24 24 C 1.39397 * 119.74636 * 0.27722 * 7 6 5 25 25 C 1.38005 * 119.87172 * 359.44737 * 24 7 6 26 26 H 1.09010 * 109.46742 * 169.05459 * 1 2 3 27 27 H 1.08999 * 109.46891 * 289.05099 * 1 2 3 28 28 H 1.08992 * 109.47554 * 49.05587 * 1 2 3 29 29 H 1.08002 * 119.93552 * 359.97438 * 5 4 2 30 30 H 1.08000 * 120.06201 * 179.97438 * 6 5 4 31 31 H 1.07996 * 120.01743 * 359.95223 * 9 8 7 32 32 H 1.07994 * 119.87826 * 179.97438 * 10 9 8 33 33 H 1.07996 * 119.98073 * 179.75361 * 13 11 10 34 34 H 0.97002 * 119.99380 * 180.02562 * 19 18 16 35 35 H 1.08001 * 120.06477 * 179.69958 * 24 7 6 36 36 H 1.08000 * 119.93438 * 180.25548 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3398 0.0000 4 6 2.2104 -0.5604 -1.6228 5 6 2.3653 0.3543 -2.6490 6 6 2.6753 -0.0789 -3.9221 7 6 2.8327 -1.4412 -4.1728 8 6 3.1662 -1.9128 -5.5384 9 6 2.4243 -1.4710 -6.6315 10 6 2.7380 -1.9115 -7.9008 11 6 3.7902 -2.7943 -8.0937 12 9 4.0903 -3.2212 -9.3398 13 6 4.5338 -3.2391 -7.0153 14 6 4.2285 -2.8031 -5.7345 15 8 4.9563 -3.2384 -4.6756 16 6 5.8876 -4.1822 -4.9196 17 1 6.0837 -4.4979 -5.9335 18 6 6.5935 -4.7475 -3.8687 19 7 6.3548 -4.3626 -2.6334 20 14 7.8834 -6.0557 -4.2066 21 1 8.9392 -5.4940 -5.0870 22 1 8.4906 -6.4949 -2.9245 23 1 7.2463 -7.2175 -4.8769 24 6 2.6701 -2.3586 -3.1360 25 6 2.3658 -1.9134 -1.8657 26 1 -0.3633 -1.0091 -0.1951 27 1 -0.3633 0.3354 0.9714 28 1 -0.3634 0.6734 -0.7762 29 1 2.2427 1.4094 -2.4536 30 1 2.7956 0.6361 -4.7225 31 1 1.6037 -0.7842 -6.4855 32 1 2.1616 -1.5684 -8.7471 33 1 5.3496 -3.9295 -7.1704 34 1 6.8490 -4.7578 -1.8983 35 1 2.7861 -3.4155 -3.3255 36 1 2.2438 -2.6230 -1.0607 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241483183.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:32 Heat of formation + Delta-G solvation = -80.265011 kcal Electronic energy + Delta-G solvation = -23542.385372 eV Core-core repulsion = 19804.581336 eV Total energy + Delta-G solvation = -3737.804036 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.067 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.91932 -41.15392 -39.63715 -38.02467 -36.80936 -34.34415 -33.45849 -31.90361 -31.06089 -29.81732 -29.34629 -27.40936 -24.57689 -24.01449 -23.08151 -22.19530 -20.12608 -19.29576 -18.98745 -17.90614 -17.23905 -17.01678 -16.89793 -16.66946 -16.09253 -15.97356 -15.74848 -15.54065 -15.40292 -15.04380 -14.96719 -14.57395 -14.26616 -14.21738 -13.98652 -13.61538 -13.50369 -13.32190 -12.94337 -12.86953 -12.52368 -12.45654 -12.30983 -12.16050 -12.00278 -11.54014 -11.20713 -10.82177 -10.33293 -9.85225 -9.65142 -9.31836 -8.92717 -8.48795 -6.16843 -0.29104 0.39664 0.48575 0.51196 1.03076 1.37092 1.45102 1.50755 1.85450 2.14864 2.53382 2.77961 3.03873 3.08704 3.18220 3.41910 3.72061 3.89661 4.00030 4.09187 4.16247 4.36439 4.39072 4.49454 4.54363 4.67547 4.78644 4.86010 4.97317 5.05424 5.12378 5.21010 5.21756 5.27400 5.34454 5.42100 5.45778 5.72504 5.94686 5.98175 6.05262 6.93727 7.64362 8.70518 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.010853 B = 0.004496 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.340743 B = 6226.532406 C = 8466.505198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.492 4.492 2 S 1.392 4.608 3 O -0.925 6.925 4 C -0.473 4.473 5 C -0.076 4.076 6 C -0.138 4.138 7 C 0.002 3.998 8 C -0.155 4.155 9 C -0.023 4.023 10 C -0.222 4.222 11 C 0.140 3.860 12 F -0.145 7.145 13 C -0.285 4.285 14 C 0.160 3.840 15 O -0.189 6.189 16 C -0.426 4.426 17 H 0.096 0.904 18 C -0.003 4.003 19 N -0.893 5.893 20 Si 1.009 2.991 21 H -0.265 1.265 22 H -0.267 1.267 23 H -0.260 1.260 24 C -0.119 4.119 25 C -0.035 4.035 26 H 0.138 0.862 27 H 0.125 0.875 28 H 0.064 0.936 29 H 0.119 0.881 30 H 0.133 0.867 31 H 0.162 0.838 32 H 0.162 0.838 33 H 0.130 0.870 34 H 0.277 0.723 35 H 0.108 0.892 36 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.419 2.096 3.013 11.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.651 4.651 2 S 1.590 4.410 3 O -0.921 6.921 4 C -0.568 4.568 5 C -0.095 4.095 6 C -0.157 4.157 7 C 0.002 3.998 8 C -0.156 4.156 9 C -0.041 4.041 10 C -0.242 4.242 11 C 0.121 3.879 12 F -0.123 7.123 13 C -0.305 4.305 14 C 0.107 3.893 15 O -0.093 6.093 16 C -0.502 4.502 17 H 0.113 0.887 18 C -0.204 4.204 19 N -0.528 5.528 20 Si 0.829 3.171 21 H -0.190 1.190 22 H -0.191 1.191 23 H -0.184 1.184 24 C -0.138 4.138 25 C -0.054 4.054 26 H 0.156 0.844 27 H 0.143 0.857 28 H 0.084 0.916 29 H 0.137 0.863 30 H 0.151 0.849 31 H 0.180 0.820 32 H 0.179 0.821 33 H 0.148 0.852 34 H 0.086 0.914 35 H 0.126 0.874 36 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -10.704 2.369 4.166 11.727 hybrid contribution 0.327 0.518 -2.470 2.545 sum -10.377 2.886 1.695 10.903 Atomic orbital electron populations 1.27712 1.20257 1.09394 1.07689 1.68726 0.86360 0.96285 0.89606 1.92955 1.75951 1.40498 1.82714 1.27856 1.12903 0.99379 1.16686 1.21019 0.96497 0.99134 0.92812 1.21343 1.02250 0.94405 0.97703 1.18867 0.95102 0.93502 0.92317 1.18307 0.98809 1.04318 0.94163 1.20976 0.97278 0.96392 0.89425 1.20943 1.00550 1.03445 0.99214 1.17639 0.95956 0.96132 0.78210 1.91437 1.92870 1.88688 1.39349 1.21036 1.06856 1.10490 0.92149 1.19414 0.90416 0.92362 0.87145 1.83991 1.44251 1.50897 1.30178 1.21721 1.15793 1.16970 0.95678 0.88689 1.26349 1.00073 1.00034 0.93968 1.70134 1.41065 1.42146 0.99498 0.84786 0.76901 0.77039 0.78418 1.18990 1.19124 1.18404 1.21408 0.99221 0.99264 0.93883 1.21108 0.93476 0.94142 0.96645 0.84356 0.85699 0.91650 0.86325 0.84876 0.82005 0.82074 0.85214 0.91416 0.87373 0.80879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -7.28 10.70 113.37 1.21 -6.07 16 2 S 1.39 28.71 14.18 -56.49 -0.80 27.91 16 3 O -0.93 -31.70 16.89 -148.98 -2.52 -34.22 16 4 C -0.47 -13.74 5.62 22.32 0.13 -13.61 16 5 C -0.08 -2.53 9.43 22.24 0.21 -2.32 16 6 C -0.14 -4.81 9.51 22.50 0.21 -4.60 16 7 C 0.00 0.09 5.27 -20.05 -0.11 -0.02 16 8 C -0.15 -6.18 5.49 -19.93 -0.11 -6.29 16 9 C -0.02 -0.72 9.50 22.46 0.21 -0.51 16 10 C -0.22 -6.88 10.01 22.31 0.22 -6.66 16 11 C 0.14 5.18 7.30 22.40 0.16 5.34 16 12 F -0.14 -5.10 17.26 44.97 0.78 -4.33 16 13 C -0.29 -12.43 9.14 22.40 0.20 -12.22 16 14 C 0.16 7.53 6.56 22.80 0.15 7.68 16 15 O -0.19 -10.39 8.13 -21.64 -0.18 -10.57 16 16 C -0.43 -23.25 9.49 67.92 0.64 -22.60 16 17 H 0.10 4.89 5.20 -2.91 -0.02 4.88 16 18 C 0.00 -0.16 5.49 84.83 0.47 0.31 16 19 N -0.89 -49.72 13.67 21.61 0.30 -49.43 16 20 Si 1.01 40.45 29.55 68.60 2.03 42.47 16 21 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 22 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 23 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 24 C -0.12 -4.54 8.79 22.49 0.20 -4.34 16 25 C -0.03 -1.04 9.74 22.24 0.22 -0.83 16 26 H 0.14 1.35 8.14 -2.38 -0.02 1.33 16 27 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.12 3.95 7.44 -2.91 -0.02 3.93 16 30 H 0.13 4.09 8.04 -2.91 -0.02 4.07 16 31 H 0.16 3.92 8.04 -2.91 -0.02 3.90 16 32 H 0.16 3.78 8.06 -2.91 -0.02 3.76 16 33 H 0.13 5.83 5.63 -2.91 -0.02 5.82 16 34 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 35 H 0.11 4.59 7.71 -2.91 -0.02 4.57 16 36 H 0.17 3.53 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -76.25 333.95 4.75 -71.50 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: 1.12 Total: 23.39 kcal Atomic # 6 Polarization: -70.76 SS G_CDS: 4.03 Total: -66.74 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: 0.30 Total: -49.43 kcal Atomic # 8 Polarization: -42.09 SS G_CDS: -2.69 Total: -44.78 kcal Atomic # 9 Polarization: -5.10 SS G_CDS: 0.78 Total: -4.33 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.47 kcal Atomic # 16 Polarization: 28.71 SS G_CDS: -0.80 Total: 27.91 kcal Total: -76.25 4.75 -71.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241483183.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.766 kcal (2) G-P(sol) polarization free energy of solvation -76.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds