Wall clock time and date at job start Tue Mar 31 2020 13:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35985 * 117.00325 * 2 1 4 4 C 1.39069 * 119.99424 * 90.00275 * 3 2 1 5 5 F 1.35096 * 119.89304 * 0.02562 * 4 3 2 6 6 C 1.38526 * 120.20903 * 180.02562 * 4 3 2 7 7 C 1.37934 * 120.20384 * 359.97438 * 6 4 3 8 8 C 1.39638 * 119.98414 * 359.97438 * 7 6 4 9 9 C 1.47917 * 120.10296 * 179.97438 * 8 7 6 10 10 C 1.39999 * 119.88313 * 129.99855 * 9 8 7 11 11 C 1.36206 * 120.11771 * 179.97438 * 10 9 8 12 12 C 1.40966 * 119.88177 * 359.97438 * 11 10 9 13 13 C 1.41002 * 120.11782 * 179.72760 * 12 11 10 14 14 H 1.07996 * 120.00429 * 149.60775 * 13 12 11 15 15 C 1.39993 * 119.99927 * 329.61282 * 13 12 11 16 16 N 1.30808 * 120.00008 * 162.15879 * 15 13 12 17 17 Si 1.86801 * 119.99819 * 342.15616 * 15 13 12 18 18 H 1.48500 * 109.47335 * 95.38594 * 17 15 13 19 19 H 1.48500 * 109.46948 * 215.38700 * 17 15 13 20 20 H 1.48502 * 109.47410 * 335.38528 * 17 15 13 21 21 C 1.40925 * 119.76835 * 0.02562 * 12 11 10 22 22 C 1.50707 * 120.06041 * 179.97438 * 21 12 11 23 23 C 1.36243 * 119.88410 * 359.97438 * 21 12 11 24 24 C 1.38422 * 119.99381 * 270.26099 * 3 2 1 25 25 Cl 1.73596 * 120.09993 * 359.96933 * 24 3 2 26 26 H 1.09008 * 109.46630 * 299.99769 * 1 2 3 27 27 H 1.08999 * 109.47188 * 59.99581 * 1 2 3 28 28 H 1.08996 * 109.47641 * 180.02562 * 1 2 3 29 29 H 1.08005 * 119.89608 * 179.97438 * 6 4 3 30 30 H 1.08000 * 120.00641 * 179.97438 * 7 6 4 31 31 H 1.07998 * 119.94286 * 0.02562 * 10 9 8 32 32 H 1.07993 * 120.06379 * 180.02562 * 11 10 9 33 33 H 0.97007 * 119.99690 * 180.02562 * 16 15 13 34 34 H 1.08998 * 109.47342 * 89.99436 * 22 21 12 35 35 H 1.08998 * 109.46784 * 209.99713 * 22 21 12 36 36 H 1.09005 * 109.46602 * 329.99676 * 22 21 12 37 37 H 1.07995 * 119.94474 * 180.02562 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 2.3621 1.8310 1.2044 5 9 2.0548 1.2269 2.3731 6 6 2.9905 3.0655 1.2096 7 6 3.3076 3.6878 0.0202 8 6 2.9954 3.0728 -1.1940 9 6 3.3336 3.7380 -2.4711 10 6 4.0170 3.0299 -3.4668 11 6 4.3305 3.6376 -4.6448 12 6 3.9650 4.9818 -4.8607 13 6 4.2920 5.6175 -6.0760 14 1 3.6551 6.3977 -6.4659 15 6 5.4423 5.2373 -6.7775 16 7 5.5726 5.5528 -8.0402 17 14 6.7912 4.2793 -5.9101 18 1 6.6020 2.8267 -6.1540 19 1 8.1144 4.7013 -6.4357 20 1 6.7296 4.5483 -4.4510 21 6 3.2772 5.6900 -3.8550 22 6 2.8838 7.1275 -4.0786 23 6 2.9684 5.0728 -2.6803 24 6 2.3557 1.8306 -1.1988 25 17 1.9573 1.0622 -2.7036 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 3.2330 3.5422 2.1480 30 1 3.7972 4.6504 0.0279 31 1 4.2955 1.9997 -3.3010 32 1 4.8573 3.0903 -5.4125 33 1 6.3696 5.2890 -8.5263 34 1 1.8923 7.1670 -4.5296 35 1 2.8698 7.6530 -3.1237 36 1 3.6049 7.6022 -4.7441 37 1 2.4410 5.6145 -1.9091 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241513398.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:03 Heat of formation + Delta-G solvation = -65.284236 kcal Electronic energy + Delta-G solvation = -23814.155178 eV Core-core repulsion = 20074.957051 eV Total energy + Delta-G solvation = -3739.198127 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.072 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.97870 -41.01097 -39.88520 -38.39302 -37.41965 -35.61980 -33.81734 -32.77255 -31.48076 -30.50353 -28.13635 -27.76694 -26.43685 -23.98808 -23.87815 -22.63477 -21.22380 -19.37817 -19.08784 -18.28654 -18.09568 -17.37643 -17.19523 -16.40365 -16.05010 -15.96544 -15.77008 -15.51822 -15.41343 -14.85196 -14.55478 -14.52194 -14.26672 -13.94353 -13.68706 -13.43126 -13.20420 -13.00987 -12.84722 -12.72788 -12.62568 -12.41886 -12.22070 -11.93351 -11.86762 -11.63209 -11.39096 -11.06608 -11.02429 -9.93421 -9.83917 -9.36984 -9.01059 -8.93118 -6.45476 -0.25805 -0.14370 0.77628 0.95164 1.07316 1.27017 1.39741 1.47683 2.10237 2.15627 2.49064 2.69663 3.14863 3.47574 3.70828 3.82830 4.05805 4.19560 4.29527 4.34192 4.35662 4.37515 4.56951 4.64069 4.69828 4.76616 4.87950 4.97581 5.03450 5.04523 5.10426 5.22265 5.30385 5.32510 5.48829 5.71421 5.83842 5.95605 6.03541 6.23075 6.25688 6.40556 6.74389 6.84910 8.12781 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.020123 B = 0.003906 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.085467 B = 7167.467020 C = 7549.826826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.339 6.339 3 C 0.065 3.935 4 C 0.064 3.936 5 F -0.133 7.133 6 C -0.113 4.113 7 C -0.082 4.082 8 C 0.002 3.998 9 C -0.185 4.185 10 C -0.050 4.050 11 C -0.253 4.253 12 C 0.084 3.916 13 C -0.463 4.463 14 H 0.069 0.931 15 C 0.053 3.947 16 N -0.840 5.840 17 Si 0.957 3.043 18 H -0.266 1.266 19 H -0.278 1.278 20 H -0.250 1.250 21 C -0.193 4.193 22 C -0.085 4.085 23 C -0.049 4.049 24 C -0.052 4.052 25 Cl -0.052 7.052 26 H 0.056 0.944 27 H 0.048 0.952 28 H 0.120 0.880 29 H 0.179 0.821 30 H 0.166 0.834 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.294 0.706 34 H 0.051 0.949 35 H 0.074 0.926 36 H 0.047 0.953 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.838 -5.188 17.089 18.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.256 6.256 3 C 0.019 3.981 4 C 0.044 3.956 5 F -0.112 7.112 6 C -0.132 4.132 7 C -0.100 4.100 8 C 0.001 3.999 9 C -0.187 4.187 10 C -0.068 4.068 11 C -0.272 4.272 12 C 0.081 3.919 13 C -0.492 4.492 14 H 0.087 0.913 15 C -0.163 4.163 16 N -0.465 5.465 17 Si 0.781 3.219 18 H -0.192 1.192 19 H -0.205 1.205 20 H -0.173 1.173 21 C -0.194 4.194 22 C -0.142 4.142 23 C -0.067 4.067 24 C -0.079 4.079 25 Cl -0.023 7.023 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.138 0.862 29 H 0.197 0.803 30 H 0.184 0.816 31 H 0.122 0.878 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.710 -5.412 16.707 18.466 hybrid contribution 0.323 -0.608 -0.659 0.953 sum -5.387 -6.020 16.047 17.966 Atomic orbital electron populations 1.23271 0.76832 1.05223 1.01198 1.86063 1.21983 1.23330 1.94209 1.18344 1.01418 0.88178 0.90164 1.17984 1.04125 0.93559 0.79937 1.91481 1.91350 1.83238 1.45092 1.21392 0.98112 0.92525 1.01161 1.21433 0.98475 1.01175 0.88933 1.18822 0.95308 0.91260 0.94496 1.18083 1.11255 0.95181 0.94135 1.20546 0.95993 0.97787 0.92477 1.20734 1.11653 0.95675 0.99156 1.17850 0.90824 0.91232 0.91983 1.19501 1.08130 1.18313 1.03236 0.91291 1.26781 1.01226 0.94078 0.94264 1.69710 1.28979 1.38584 1.09240 0.85597 0.76754 0.78651 0.80876 1.19228 1.20468 1.17304 1.19803 1.07943 0.97068 0.94608 1.20442 1.00032 0.92185 1.01503 1.20553 0.97052 0.92763 0.96338 1.21401 1.04485 0.95256 0.86795 1.98367 1.92348 1.80679 1.30892 0.92556 0.93359 0.86186 0.80338 0.81628 0.87776 0.89086 0.89525 0.93073 0.90728 0.93374 0.85008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 11.13 113.37 1.26 1.82 16 2 O -0.34 -9.28 9.73 -93.38 -0.91 -10.18 16 3 C 0.06 1.82 5.72 22.51 0.13 1.94 16 4 C 0.06 1.57 7.31 22.54 0.16 1.73 16 5 F -0.13 -3.25 17.10 44.97 0.77 -2.48 16 6 C -0.11 -2.25 10.00 22.27 0.22 -2.03 16 7 C -0.08 -1.89 9.50 22.54 0.21 -1.67 16 8 C 0.00 0.07 5.47 -20.02 -0.11 -0.04 16 9 C -0.19 -6.76 5.13 -19.87 -0.10 -6.86 16 10 C -0.05 -2.05 8.10 22.22 0.18 -1.87 16 11 C -0.25 -11.78 7.08 22.46 0.16 -11.62 16 12 C 0.08 4.06 5.09 -21.28 -0.11 3.95 16 13 C -0.46 -24.54 8.50 23.37 0.20 -24.34 16 14 H 0.07 3.88 7.22 -2.91 -0.02 3.86 16 15 C 0.05 2.72 5.40 85.27 0.46 3.18 16 16 N -0.84 -44.58 13.93 21.83 0.30 -44.28 16 17 Si 0.96 42.13 24.51 68.60 1.68 43.81 16 18 H -0.27 -11.46 6.71 99.48 0.67 -10.79 16 19 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 20 H -0.25 -11.14 6.86 99.48 0.68 -10.45 16 21 C -0.19 -8.07 5.90 -19.67 -0.12 -8.19 16 22 C -0.08 -3.09 9.41 71.24 0.67 -2.42 16 23 C -0.05 -1.77 9.07 22.22 0.20 -1.57 16 24 C -0.05 -1.60 6.30 22.67 0.14 -1.45 16 25 Cl -0.05 -1.69 25.54 -2.72 -0.07 -1.76 16 26 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 27 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.18 2.24 8.06 -2.91 -0.02 2.21 16 30 H 0.17 3.11 8.04 -2.91 -0.02 3.09 16 31 H 0.10 4.04 7.17 -2.91 -0.02 4.02 16 32 H 0.09 4.34 4.79 -2.91 -0.01 4.33 16 33 H 0.29 14.11 8.30 -92.70 -0.77 13.34 16 34 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.07 2.18 8.08 -2.39 -0.02 2.16 16 36 H 0.05 1.91 6.84 -2.38 -0.02 1.90 16 37 H 0.13 3.81 8.03 -2.91 -0.02 3.78 16 Total: -1.00 -58.61 329.70 6.40 -52.21 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: 1.05 Total: 12.10 kcal Atomic # 6 Polarization: -52.99 SS G_CDS: 3.57 Total: -49.42 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: 0.30 Total: -44.28 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: -0.91 Total: -10.18 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.77 Total: -2.48 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 1.68 Total: 43.81 kcal Atomic # 17 Polarization: -1.69 SS G_CDS: -0.07 Total: -1.76 kcal Total: -58.61 6.40 -52.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241513398.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.072 kcal (2) G-P(sol) polarization free energy of solvation -58.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds