Wall clock time and date at job start Tue Mar 31 2020 12:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31086 * 1 3 3 Si 1.86800 * 119.99955 * 2 1 4 4 H 1.48497 * 109.46883 * 266.36248 * 3 2 1 5 5 H 1.48498 * 109.47126 * 26.36056 * 3 2 1 6 6 H 1.48497 * 109.46976 * 146.35952 * 3 2 1 7 7 C 1.39685 * 119.99891 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00278 * 350.00493 * 7 2 1 9 9 C 1.40956 * 119.99587 * 170.00571 * 7 2 1 10 10 C 1.38989 * 126.93543 * 335.46302 * 9 7 2 11 11 N 1.35608 * 109.23857 * 179.52132 * 10 9 7 12 12 H 0.96997 * 124.69900 * 179.97438 * 11 10 9 13 13 C 1.38170 * 110.59013 * 0.62449 * 11 10 9 14 14 C 1.39169 * 132.73153 * 179.29409 * 13 11 10 15 15 C 1.37999 * 120.23826 * 180.02562 * 14 13 11 16 16 C 1.38367 * 120.77094 * 0.02562 * 15 14 13 17 17 C 1.39135 * 120.10287 * 359.97438 * 16 15 14 18 18 C 1.48190 * 120.27610 * 179.97438 * 17 16 15 19 19 C 1.39946 * 119.83767 * 123.44146 * 18 17 16 20 20 C 1.36345 * 120.09501 * 179.97438 * 19 18 17 21 21 C 1.39469 * 120.41560 * 0.03672 * 20 19 18 22 22 S 1.76153 * 131.53479 * 179.97438 * 21 20 19 23 23 C 1.70634 * 90.84605 * 180.02562 * 22 21 20 24 24 N 1.27899 * 111.55944 * 359.97438 * 23 22 21 25 25 C 1.34704 * 117.83375 * 359.95841 * 24 23 22 26 26 C 1.38456 * 119.83640 * 303.41013 * 18 17 16 27 27 C 1.40228 * 107.89098 * 359.53216 * 13 11 10 28 28 H 0.96997 * 119.99763 * 0.02562 * 1 2 3 29 29 H 1.07997 * 125.37819 * 0.03011 * 10 9 7 30 30 H 1.08001 * 119.88412 * 0.03052 * 14 13 11 31 31 H 1.08002 * 119.61511 * 180.02562 * 15 14 13 32 32 H 1.08006 * 119.94471 * 179.97438 * 16 15 14 33 33 H 1.07997 * 119.94684 * 359.97438 * 19 18 17 34 34 H 1.07995 * 119.78781 * 180.02562 * 20 19 18 35 35 H 1.08007 * 124.21759 * 180.02562 * 23 22 21 36 36 H 1.07989 * 119.96975 * 359.72870 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3109 0.0000 0.0000 3 14 2.2448 1.6177 0.0000 4 1 2.5692 2.0020 -1.3972 5 1 1.4059 2.6737 0.6216 6 1 3.5018 1.4636 0.7756 7 6 2.0093 -1.2097 0.0005 8 1 1.4816 -2.1379 0.1633 9 6 3.4028 -1.2190 -0.2113 10 6 4.1524 -0.2580 -0.8793 11 7 5.4593 -0.6198 -0.8630 12 1 6.1787 -0.1091 -1.2660 13 6 5.6218 -1.8241 -0.2055 14 6 6.7385 -2.6100 0.0634 15 6 6.6033 -3.7954 0.7569 16 6 5.3619 -4.2220 1.1945 17 6 4.2301 -3.4544 0.9383 18 6 2.8986 -3.9078 1.4047 19 6 2.1313 -3.0797 2.2317 20 6 0.9053 -3.4915 2.6635 21 6 0.4061 -4.7381 2.2869 22 16 -1.1096 -5.5522 2.6652 23 6 -0.6464 -6.9030 1.7312 24 7 0.5093 -6.7390 1.2084 25 6 1.1549 -5.5837 1.4594 26 6 2.4195 -5.1485 1.0195 27 6 4.3592 -2.2508 0.2304 28 1 -0.4849 0.8400 -0.0004 29 1 3.7577 0.6396 -1.3320 30 1 7.7144 -2.2910 -0.2717 31 1 7.4767 -4.3973 0.9604 32 1 5.2714 -5.1523 1.7357 33 1 2.5109 -2.1132 2.5284 34 1 0.3172 -2.8482 3.3012 35 1 -1.2538 -7.7861 1.5975 36 1 3.0143 -5.7808 0.3772 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241870186.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:16 Heat of formation + Delta-G solvation = 113.480693 kcal Electronic energy + Delta-G solvation = -23355.955868 eV Core-core repulsion = 20089.615252 eV Total energy + Delta-G solvation = -3266.340616 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 320.068 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.29573 -39.69942 -36.96424 -35.70080 -33.50466 -31.96012 -30.44704 -29.47807 -28.44278 -27.99283 -24.73874 -24.53005 -23.04921 -21.87836 -20.84639 -20.58414 -19.39615 -18.15878 -17.14590 -16.44480 -15.95756 -15.61802 -15.36002 -14.85709 -14.37851 -14.33042 -14.17371 -13.63481 -13.46458 -13.32140 -13.11400 -13.08662 -12.45299 -11.77627 -11.65687 -11.49262 -11.42821 -11.05331 -10.89897 -10.78687 -10.61340 -10.38896 -10.06642 -9.74676 -9.62225 -9.40829 -9.23502 -8.66028 -8.14502 -7.65568 -7.35102 -6.82893 -6.69544 -4.15544 0.83699 1.36928 1.58635 1.99561 2.02985 2.37848 2.80700 3.02691 3.18322 3.27874 3.73066 4.04349 4.11677 4.21550 4.27585 4.60339 5.03548 5.15855 5.29344 5.48002 5.51810 5.66170 5.71697 5.76656 5.88692 5.99000 6.07742 6.29185 6.36249 6.49931 6.53606 6.58482 6.73633 6.87591 6.97137 7.07529 7.09634 7.25259 7.39707 7.55790 7.72912 7.87866 8.13018 8.39803 8.61497 8.78806 8.98162 10.32933 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.012045 B = 0.005705 C = 0.004085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.111970 B = 4906.759076 C = 6853.319889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.081 3.919 3 Si 0.906 3.094 4 H -0.276 1.276 5 H -0.297 1.297 6 H -0.248 1.248 7 C -0.422 4.422 8 H 0.096 0.904 9 C 0.037 3.963 10 C -0.169 4.169 11 N -0.584 5.584 12 H 0.398 0.602 13 C 0.105 3.895 14 C -0.152 4.152 15 C -0.103 4.103 16 C -0.169 4.169 17 C 0.010 3.990 18 C -0.010 4.010 19 C -0.034 4.034 20 C -0.078 4.078 21 C -0.165 4.165 22 S 0.070 5.930 23 C 0.050 3.950 24 N -0.460 5.460 25 C 0.065 3.935 26 C -0.057 4.057 27 C -0.111 4.111 28 H 0.279 0.721 29 H 0.145 0.855 30 H 0.105 0.895 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.140 0.860 34 H 0.127 0.873 35 H 0.197 0.803 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.311 -6.569 4.767 8.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.134 4.134 3 Si 0.735 3.265 4 H -0.203 1.203 5 H -0.225 1.225 6 H -0.172 1.172 7 C -0.453 4.453 8 H 0.113 0.887 9 C 0.031 3.969 10 C -0.291 4.291 11 N -0.186 5.186 12 H 0.231 0.769 13 C -0.006 4.006 14 C -0.174 4.174 15 C -0.122 4.122 16 C -0.189 4.189 17 C 0.010 3.990 18 C -0.013 4.013 19 C -0.056 4.056 20 C -0.101 4.101 21 C -0.283 4.283 22 S 0.322 5.678 23 C -0.255 4.255 24 N -0.172 5.172 25 C -0.054 4.054 26 C -0.078 4.078 27 C -0.117 4.117 28 H 0.089 0.911 29 H 0.162 0.838 30 H 0.123 0.877 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.157 0.843 34 H 0.145 0.855 35 H 0.214 0.786 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.328 -6.607 4.927 8.565 hybrid contribution 1.258 1.421 -0.824 2.069 sum 3.587 -5.186 4.103 7.523 Atomic orbital electron populations 1.69744 1.07396 1.29248 1.39386 1.25872 0.94731 1.00568 0.92204 0.86474 0.80374 0.80821 0.78845 1.20337 1.22474 1.17224 1.18729 0.89211 0.95375 1.42022 0.88663 1.18242 0.92640 0.90664 0.95394 1.21716 0.82802 1.06474 1.18096 1.40931 1.08104 1.18703 1.50813 0.76862 1.18110 0.94971 0.88341 0.99206 1.19878 0.95441 0.96443 1.05650 1.20403 0.96714 0.95799 0.99311 1.20655 0.91846 1.00371 1.06064 1.17967 0.90936 0.93094 0.97044 1.18548 0.94176 0.92488 0.96100 1.20954 0.92587 0.98338 0.93687 1.19889 0.96102 0.92741 1.01320 1.23728 0.97763 1.01261 1.05584 1.83769 1.18723 1.12692 1.52617 1.27853 0.95769 1.02832 0.99080 1.66148 1.07749 1.21119 1.22180 1.18978 0.96918 0.89291 1.00187 1.20568 0.92341 0.95541 0.99368 1.19221 0.93114 0.96310 1.03101 0.91061 0.83838 0.87669 0.86891 0.86941 0.84257 0.85484 0.78622 0.85120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.07 13.94 55.54 0.77 -21.30 16 2 C 0.08 2.07 5.51 -17.33 -0.10 1.98 16 3 Si 0.91 20.25 24.56 -169.99 -4.17 16.08 16 4 H -0.28 -6.02 6.58 56.52 0.37 -5.64 16 5 H -0.30 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.25 -5.60 6.64 56.52 0.38 -5.22 16 7 C -0.42 -10.95 8.01 -38.01 -0.30 -11.26 16 8 H 0.10 2.64 5.99 -52.48 -0.31 2.33 16 9 C 0.04 0.90 5.57 -104.83 -0.58 0.31 16 10 C -0.17 -3.82 9.22 -15.60 -0.14 -3.96 16 11 N -0.58 -11.38 5.99 -9.81 -0.06 -11.44 16 12 H 0.40 6.17 8.96 -40.82 -0.37 5.80 16 13 C 0.11 2.11 7.23 -83.91 -0.61 1.50 16 14 C -0.15 -2.57 10.06 -39.32 -0.40 -2.97 16 15 C -0.10 -1.63 10.00 -39.62 -0.40 -2.03 16 16 C -0.17 -2.91 9.61 -39.20 -0.38 -3.28 16 17 C 0.01 0.21 5.39 -104.73 -0.56 -0.36 16 18 C -0.01 -0.20 4.58 -105.09 -0.48 -0.69 16 19 C -0.03 -0.67 6.70 -39.62 -0.27 -0.93 16 20 C -0.08 -1.43 10.00 -39.81 -0.40 -1.82 16 21 C -0.17 -2.98 6.56 -38.46 -0.25 -3.23 16 22 S 0.07 0.99 23.17 -107.50 -2.49 -1.50 16 23 C 0.05 0.69 12.10 51.12 0.62 1.31 16 24 N -0.46 -7.95 10.57 -12.99 -0.14 -8.09 16 25 C 0.06 1.21 6.99 -84.98 -0.59 0.62 16 26 C -0.06 -1.08 9.66 -38.54 -0.37 -1.45 16 27 C -0.11 -2.46 6.07 -104.65 -0.63 -3.09 16 28 H 0.28 6.86 8.30 -40.82 -0.34 6.52 16 29 H 0.14 3.20 4.31 -52.49 -0.23 2.97 16 30 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 31 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 32 H 0.11 1.70 8.06 -52.48 -0.42 1.27 16 33 H 0.14 2.76 7.83 -52.49 -0.41 2.35 16 34 H 0.13 2.10 8.06 -52.49 -0.42 1.68 16 35 H 0.20 1.81 8.06 -52.48 -0.42 1.39 16 36 H 0.13 2.30 8.06 -52.49 -0.42 1.88 16 LS Contribution 315.54 15.07 4.76 4.76 Total: -1.00 -29.39 315.54 -10.22 -39.61 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -3.05 Total: 11.24 kcal Atomic # 6 Polarization: -23.51 SS G_CDS: -5.85 Total: -29.36 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: 0.58 Total: -40.83 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.17 Total: 16.08 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -2.49 Total: -1.50 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.39 -10.22 -39.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241870186.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.091 kcal (2) G-P(sol) polarization free energy of solvation -29.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds