Wall clock time and date at job start Tue Mar 31 2020 12:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31086 * 1 3 3 Si 1.86800 * 119.99955 * 2 1 4 4 H 1.48497 * 109.46883 * 266.36248 * 3 2 1 5 5 H 1.48498 * 109.47126 * 26.36056 * 3 2 1 6 6 H 1.48497 * 109.46976 * 146.35952 * 3 2 1 7 7 C 1.39685 * 119.99891 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00278 * 350.00493 * 7 2 1 9 9 C 1.40956 * 119.99587 * 170.00571 * 7 2 1 10 10 C 1.38989 * 126.93543 * 335.46302 * 9 7 2 11 11 N 1.35608 * 109.23857 * 179.52132 * 10 9 7 12 12 H 0.96997 * 124.69900 * 179.97438 * 11 10 9 13 13 C 1.38170 * 110.59013 * 0.62449 * 11 10 9 14 14 C 1.39169 * 132.73153 * 179.29409 * 13 11 10 15 15 C 1.37999 * 120.23826 * 180.02562 * 14 13 11 16 16 C 1.38367 * 120.77094 * 0.02562 * 15 14 13 17 17 C 1.39135 * 120.10287 * 359.97438 * 16 15 14 18 18 C 1.48190 * 120.27610 * 179.97438 * 17 16 15 19 19 C 1.39946 * 119.83767 * 123.44146 * 18 17 16 20 20 C 1.36345 * 120.09501 * 179.97438 * 19 18 17 21 21 C 1.39469 * 120.41560 * 0.03672 * 20 19 18 22 22 S 1.76153 * 131.53479 * 179.97438 * 21 20 19 23 23 C 1.70634 * 90.84605 * 180.02562 * 22 21 20 24 24 N 1.27899 * 111.55944 * 359.97438 * 23 22 21 25 25 C 1.34704 * 117.83375 * 359.95841 * 24 23 22 26 26 C 1.38456 * 119.83640 * 303.41013 * 18 17 16 27 27 C 1.40228 * 107.89098 * 359.53216 * 13 11 10 28 28 H 0.96997 * 119.99763 * 0.02562 * 1 2 3 29 29 H 1.07997 * 125.37819 * 0.03011 * 10 9 7 30 30 H 1.08001 * 119.88412 * 0.03052 * 14 13 11 31 31 H 1.08002 * 119.61511 * 180.02562 * 15 14 13 32 32 H 1.08006 * 119.94471 * 179.97438 * 16 15 14 33 33 H 1.07997 * 119.94684 * 359.97438 * 19 18 17 34 34 H 1.07995 * 119.78781 * 180.02562 * 20 19 18 35 35 H 1.08007 * 124.21759 * 180.02562 * 23 22 21 36 36 H 1.07989 * 119.96975 * 359.72870 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3109 0.0000 0.0000 3 14 2.2448 1.6177 0.0000 4 1 2.5692 2.0020 -1.3972 5 1 1.4059 2.6737 0.6216 6 1 3.5018 1.4636 0.7756 7 6 2.0093 -1.2097 0.0005 8 1 1.4816 -2.1379 0.1633 9 6 3.4028 -1.2190 -0.2113 10 6 4.1524 -0.2580 -0.8793 11 7 5.4593 -0.6198 -0.8630 12 1 6.1787 -0.1091 -1.2660 13 6 5.6218 -1.8241 -0.2055 14 6 6.7385 -2.6100 0.0634 15 6 6.6033 -3.7954 0.7569 16 6 5.3619 -4.2220 1.1945 17 6 4.2301 -3.4544 0.9383 18 6 2.8986 -3.9078 1.4047 19 6 2.1313 -3.0797 2.2317 20 6 0.9053 -3.4915 2.6635 21 6 0.4061 -4.7381 2.2869 22 16 -1.1096 -5.5522 2.6652 23 6 -0.6464 -6.9030 1.7312 24 7 0.5093 -6.7390 1.2084 25 6 1.1549 -5.5837 1.4594 26 6 2.4195 -5.1485 1.0195 27 6 4.3592 -2.2508 0.2304 28 1 -0.4849 0.8400 -0.0004 29 1 3.7577 0.6396 -1.3320 30 1 7.7144 -2.2910 -0.2717 31 1 7.4767 -4.3973 0.9604 32 1 5.2714 -5.1523 1.7357 33 1 2.5109 -2.1132 2.5284 34 1 0.3172 -2.8482 3.3012 35 1 -1.2538 -7.7861 1.5975 36 1 3.0143 -5.7808 0.3772 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241870186.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:15 Heat of formation + Delta-G solvation = 96.606795 kcal Electronic energy + Delta-G solvation = -23356.687575 eV Core-core repulsion = 20089.615252 eV Total energy + Delta-G solvation = -3267.072323 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 320.068 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.79463 -41.10059 -38.37150 -37.13849 -35.31349 -33.44816 -32.01328 -30.94981 -29.95239 -29.47644 -26.42504 -25.88252 -24.47712 -23.33462 -22.34620 -22.06836 -21.04085 -19.50178 -18.62324 -18.19374 -17.40483 -17.02687 -16.81065 -16.30507 -16.04414 -15.71649 -15.55372 -15.09953 -14.96386 -14.88442 -14.71827 -14.44302 -13.81599 -13.43614 -13.22659 -12.97914 -12.89543 -12.73899 -12.47622 -12.29335 -12.02293 -11.99858 -11.58050 -11.49078 -11.03427 -11.01600 -10.65039 -10.20829 -9.59517 -8.99991 -8.87217 -8.60996 -8.41160 -6.05050 -0.46351 -0.07199 0.34496 0.53674 0.78392 0.92825 1.22236 1.35694 1.48150 1.49164 1.96346 2.21533 2.66724 2.73192 3.00025 3.14485 3.45228 3.67455 3.79417 4.16556 4.21825 4.29786 4.31980 4.39353 4.51216 4.58007 4.67050 4.84239 4.91646 4.96927 5.09509 5.17094 5.22811 5.34390 5.45272 5.52242 5.67486 5.80655 5.90799 5.94498 6.10291 6.48111 6.54994 6.61190 6.85643 7.06930 7.19864 8.48599 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.012045 B = 0.005705 C = 0.004085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.111970 B = 4906.759076 C = 6853.319889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.038 3.962 3 Si 0.960 3.040 4 H -0.264 1.264 5 H -0.293 1.293 6 H -0.252 1.252 7 C -0.434 4.434 8 H 0.061 0.939 9 C 0.000 4.000 10 C -0.156 4.156 11 N -0.578 5.578 12 H 0.418 0.582 13 C 0.094 3.906 14 C -0.143 4.143 15 C -0.093 4.093 16 C -0.159 4.159 17 C -0.013 4.013 18 C -0.017 4.017 19 C -0.053 4.053 20 C -0.082 4.082 21 C -0.198 4.198 22 S 0.120 5.880 23 C 0.070 3.930 24 N -0.492 5.492 25 C 0.055 3.945 26 C -0.071 4.071 27 C -0.146 4.146 28 H 0.282 0.718 29 H 0.147 0.853 30 H 0.144 0.856 31 H 0.159 0.841 32 H 0.134 0.866 33 H 0.121 0.879 34 H 0.135 0.865 35 H 0.247 0.753 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.429 -8.051 4.896 10.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.171 4.171 3 Si 0.787 3.213 4 H -0.191 1.191 5 H -0.221 1.221 6 H -0.176 1.176 7 C -0.467 4.467 8 H 0.079 0.921 9 C -0.007 4.007 10 C -0.279 4.279 11 N -0.182 5.182 12 H 0.255 0.745 13 C -0.017 4.017 14 C -0.164 4.164 15 C -0.112 4.112 16 C -0.178 4.178 17 C -0.014 4.014 18 C -0.020 4.020 19 C -0.074 4.074 20 C -0.105 4.105 21 C -0.316 4.316 22 S 0.373 5.627 23 C -0.235 4.235 24 N -0.206 5.206 25 C -0.063 4.063 26 C -0.092 4.092 27 C -0.153 4.153 28 H 0.091 0.909 29 H 0.164 0.836 30 H 0.162 0.838 31 H 0.176 0.824 32 H 0.152 0.848 33 H 0.139 0.861 34 H 0.153 0.847 35 H 0.263 0.737 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.493 -8.092 5.054 10.546 hybrid contribution 0.682 1.622 -0.814 1.938 sum 5.174 -6.470 4.240 9.307 Atomic orbital electron populations 1.69813 1.08557 1.29887 1.42637 1.26492 0.95292 1.03112 0.92172 0.85636 0.78936 0.77542 0.79176 1.19059 1.22109 1.17649 1.18601 0.90259 0.94397 1.43429 0.92050 1.18410 0.92504 0.92798 0.96965 1.21791 0.84181 1.05577 1.16330 1.40835 1.07519 1.18962 1.50909 0.74457 1.18490 0.95295 0.88669 0.99202 1.20350 0.95952 0.95801 1.04344 1.20952 0.97463 0.95520 0.97244 1.21048 0.91603 1.00442 1.04743 1.18213 0.92040 0.93325 0.97782 1.18625 0.94521 0.92747 0.96120 1.20839 0.93601 0.97931 0.95059 1.20016 0.95849 0.93353 1.01265 1.24038 1.00140 1.01331 1.06123 1.83583 1.15786 1.11606 1.51720 1.28783 0.94702 1.03691 0.96307 1.66226 1.09337 1.20792 1.24211 1.19214 0.97059 0.90066 0.99963 1.20657 0.93039 0.95589 0.99911 1.19443 0.93712 0.97210 1.04894 0.90870 0.83589 0.83835 0.82360 0.84796 0.86053 0.84708 0.73720 0.84488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.50 13.94 21.79 0.30 -49.19 16 2 C 0.04 2.07 5.51 85.15 0.47 2.54 16 3 Si 0.96 43.05 24.56 68.60 1.68 44.73 16 4 H -0.26 -11.17 6.58 99.48 0.65 -10.51 16 5 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 6 H -0.25 -11.30 6.64 99.48 0.66 -10.64 16 7 C -0.43 -24.02 8.01 23.29 0.19 -23.84 16 8 H 0.06 3.71 5.99 -2.91 -0.02 3.70 16 9 C 0.00 -0.01 5.57 -20.00 -0.11 -0.12 16 10 C -0.16 -7.02 9.22 84.29 0.78 -6.24 16 11 N -0.58 -21.60 5.99 -184.94 -1.11 -22.71 16 12 H 0.42 11.88 8.96 -92.71 -0.83 11.05 16 13 C 0.09 3.61 7.23 38.85 0.28 3.89 16 14 C -0.14 -4.27 10.06 22.44 0.23 -4.04 16 15 C -0.09 -2.55 10.00 22.24 0.22 -2.32 16 16 C -0.16 -5.12 9.61 22.52 0.22 -4.91 16 17 C -0.01 -0.52 5.39 -19.93 -0.11 -0.63 16 18 C -0.02 -0.72 4.58 -20.17 -0.09 -0.81 16 19 C -0.05 -2.23 6.70 22.24 0.15 -2.08 16 20 C -0.08 -3.23 10.00 22.12 0.22 -3.01 16 21 C -0.20 -7.32 6.56 23.00 0.15 -7.17 16 22 S 0.12 3.26 23.17 -56.49 -1.31 1.95 16 23 C 0.07 1.75 12.10 130.82 1.58 3.33 16 24 N -0.49 -16.59 10.57 -194.83 -2.06 -18.65 16 25 C 0.06 2.12 6.99 39.76 0.28 2.40 16 26 C -0.07 -2.79 9.66 22.95 0.22 -2.56 16 27 C -0.15 -6.59 6.07 -19.88 -0.12 -6.71 16 28 H 0.28 14.62 8.30 -92.71 -0.77 13.85 16 29 H 0.15 6.43 4.31 -2.91 -0.01 6.42 16 30 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 31 H 0.16 2.99 8.06 -2.91 -0.02 2.96 16 32 H 0.13 3.71 8.06 -2.91 -0.02 3.69 16 33 H 0.12 5.37 7.83 -2.91 -0.02 5.35 16 34 H 0.14 4.82 8.06 -2.91 -0.02 4.80 16 35 H 0.25 3.43 8.06 -2.91 -0.02 3.41 16 36 H 0.14 4.96 8.06 -2.92 -0.02 4.94 16 Total: -1.00 -68.35 315.54 2.29 -66.06 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: 0.23 Total: 30.09 kcal Atomic # 6 Polarization: -56.82 SS G_CDS: 4.55 Total: -52.27 kcal Atomic # 7 Polarization: -87.69 SS G_CDS: -2.86 Total: -90.55 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 1.68 Total: 44.73 kcal Atomic # 16 Polarization: 3.26 SS G_CDS: -1.31 Total: 1.95 kcal Total: -68.35 2.29 -66.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241870186.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.665 kcal (2) G-P(sol) polarization free energy of solvation -68.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds