Wall clock time and date at job start Tue Mar 31 2020 13:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35678 * 117.00087 * 2 1 4 4 C 1.37963 * 120.19258 * 0.23678 * 3 2 1 5 5 C 1.39650 * 119.92875 * 180.28905 * 4 3 2 6 6 C 1.47979 * 119.83835 * 179.72078 * 5 4 3 7 7 C 1.39583 * 120.15079 * 309.70805 * 6 5 4 8 8 C 1.38015 * 119.86795 * 180.02562 * 7 6 5 9 9 Cl 1.73600 * 119.91399 * 180.02562 * 8 7 6 10 10 C 1.38550 * 120.17283 * 0.02562 * 8 7 6 11 11 C 1.38285 * 120.30718 * 359.97438 * 10 8 7 12 12 C 1.50693 * 119.93603 * 180.02562 * 11 10 8 13 13 C 1.38233 * 120.12816 * 0.02562 * 11 10 8 14 14 F 1.35095 * 120.08561 * 180.02562 * 13 11 10 15 15 C 1.40097 * 120.32165 * 359.45091 * 5 4 3 16 16 C 1.36107 * 120.39181 * 0.29260 * 15 5 4 17 17 C 1.40918 * 120.05877 * 359.97438 * 16 15 5 18 18 C 1.40829 * 120.15912 * 180.02562 * 17 16 15 19 19 H 1.07996 * 120.00375 * 204.93581 * 18 17 16 20 20 C 1.39986 * 119.99801 * 24.93946 * 18 17 16 21 21 N 1.30845 * 120.00123 * 17.81668 * 20 18 17 22 22 Si 1.86803 * 119.99844 * 197.81874 * 20 18 17 23 23 H 1.48498 * 109.46861 * 89.99950 * 22 20 18 24 24 H 1.48501 * 109.46842 * 209.99588 * 22 20 18 25 25 H 1.48495 * 109.47187 * 330.00021 * 22 20 18 26 26 H 1.08992 * 109.47214 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47397 * 299.99900 * 1 2 3 28 28 H 1.09009 * 109.47009 * 59.99644 * 1 2 3 29 29 H 1.08001 * 120.03446 * 0.02562 * 4 3 2 30 30 H 1.07994 * 120.06505 * 359.97438 * 7 6 5 31 31 H 1.07993 * 119.84504 * 180.27637 * 10 8 7 32 32 H 1.08995 * 109.47173 * 89.99863 * 12 11 10 33 33 H 1.08994 * 109.47494 * 210.00425 * 12 11 10 34 34 H 1.09009 * 109.47410 * 330.00377 * 12 11 10 35 35 H 1.07995 * 119.80755 * 180.27080 * 15 5 4 36 36 H 1.08000 * 119.97173 * 180.02562 * 16 15 5 37 37 H 0.97004 * 119.99847 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 1.2975 2.3685 0.0049 5 6 1.9372 3.6098 -0.0012 6 6 1.1334 4.8523 -0.0022 7 6 0.1019 5.0193 -0.9275 8 6 -0.6437 6.1807 -0.9235 9 17 -1.9274 6.3893 -2.0734 10 6 -0.3704 7.1805 -0.0042 11 6 0.6499 7.0227 0.9158 12 6 0.9396 8.1153 1.9123 13 6 1.4046 5.8646 0.9230 14 9 2.4008 5.7111 1.8225 15 6 3.3362 3.6846 -0.0008 16 6 4.0864 2.5490 -0.0004 17 6 3.4578 1.2877 0.0002 18 6 4.2320 0.1114 0.0011 19 1 3.8207 -0.8062 -0.3928 20 6 5.5349 0.1314 0.5128 21 7 5.9164 1.1100 1.2931 22 14 6.7288 -1.2391 0.0815 23 1 7.4733 -0.8771 -1.1514 24 1 7.6868 -1.4311 1.1998 25 1 5.9755 -2.4982 -0.1468 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 0.2187 2.3162 0.0092 30 1 -0.1119 4.2416 -1.6457 31 1 -0.9600 8.0853 -0.0029 32 1 0.3479 7.9518 2.8130 33 1 1.9994 8.1035 2.1667 34 1 0.6809 9.0811 1.4781 35 1 3.8222 4.6490 -0.0011 36 1 5.1644 2.6145 0.0004 37 1 6.8191 1.1236 1.6479 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242225711.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:13 Heat of formation + Delta-G solvation = -57.563547 kcal Electronic energy + Delta-G solvation = -23743.817778 eV Core-core repulsion = 20004.954445 eV Total energy + Delta-G solvation = -3738.863333 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.072 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.42746 -39.21411 -38.49461 -36.46963 -36.10982 -34.18554 -32.62494 -30.85364 -29.03280 -28.89701 -26.94013 -26.55480 -25.30915 -22.48032 -21.72709 -20.51908 -20.22044 -17.61986 -17.23971 -16.70556 -16.33340 -15.55980 -15.46906 -15.14304 -14.70708 -14.61597 -14.21408 -13.83713 -13.42586 -13.14273 -13.11880 -12.92137 -12.78539 -12.68172 -12.47205 -11.99176 -11.87269 -11.59242 -11.33339 -11.28527 -11.08345 -10.96673 -10.78541 -10.73323 -10.49962 -9.99774 -9.89174 -9.63579 -9.36170 -8.64286 -8.27764 -7.47950 -7.14054 -6.86158 -4.36613 1.17673 1.25888 2.17340 2.58313 2.95422 3.01593 3.06307 3.08367 3.68679 3.84171 4.39050 4.48466 4.54004 4.77159 5.00147 5.16123 5.36175 5.46162 5.49621 5.56873 5.72418 5.78843 5.82710 5.92292 5.99571 6.05431 6.12417 6.27173 6.32244 6.34786 6.48768 6.75591 6.92421 7.03410 7.14287 7.24282 7.58033 7.62355 7.91415 8.05628 8.29768 8.54562 8.67052 8.94336 10.00837 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.016496 B = 0.003738 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.971828 B = 7489.458025 C = 8609.621902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.312 6.312 3 C 0.006 3.994 4 C -0.143 4.143 5 C -0.188 4.188 6 C 0.002 3.998 7 C -0.100 4.100 8 C -0.036 4.036 9 Cl -0.080 7.080 10 C -0.115 4.115 11 C -0.108 4.108 12 C -0.110 4.110 13 C 0.092 3.908 14 F -0.127 7.127 15 C -0.081 4.081 16 C -0.156 4.156 17 C 0.111 3.889 18 C -0.429 4.429 19 H 0.088 0.912 20 C 0.071 3.929 21 N -0.779 5.779 22 Si 0.914 3.086 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.260 1.260 26 H 0.082 0.918 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.099 0.901 30 H 0.137 0.863 31 H 0.133 0.867 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.126 0.874 37 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.661 8.453 -1.549 12.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.227 6.227 3 C -0.038 4.038 4 C -0.162 4.162 5 C -0.189 4.189 6 C 0.001 3.999 7 C -0.119 4.119 8 C -0.062 4.062 9 Cl -0.051 7.051 10 C -0.134 4.134 11 C -0.109 4.109 12 C -0.167 4.167 13 C 0.072 3.928 14 F -0.105 7.105 15 C -0.100 4.100 16 C -0.176 4.176 17 C 0.108 3.892 18 C -0.457 4.457 19 H 0.106 0.894 20 C -0.149 4.149 21 N -0.402 5.402 22 Si 0.738 3.262 23 H -0.191 1.191 24 H -0.201 1.201 25 H -0.183 1.183 26 H 0.101 0.899 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.117 0.883 30 H 0.155 0.845 31 H 0.151 0.849 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.144 0.856 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.429 8.344 -1.454 11.949 hybrid contribution 0.274 -0.361 -0.020 0.453 sum -8.155 7.983 -1.474 11.507 Atomic orbital electron populations 1.22741 0.81631 1.01839 0.99976 1.85969 1.18281 1.27977 1.90423 1.18986 0.92244 0.82621 1.09938 1.20525 0.97162 0.91670 1.06855 1.17482 0.92202 0.89147 1.20106 1.18941 0.94580 0.93857 0.92564 1.21056 0.95262 0.96417 0.99167 1.20757 0.93747 0.96848 0.94894 1.98344 1.49837 1.97368 1.59526 1.20563 0.98494 0.99024 0.95274 1.19698 0.96726 0.95381 0.99096 1.20692 1.02878 0.95829 0.97274 1.17757 0.89361 0.95140 0.90546 1.91496 1.58305 1.95682 1.65019 1.20341 0.91914 0.97423 1.00292 1.20727 0.99665 0.90394 1.06812 1.17160 0.87430 0.94089 0.90541 1.19591 0.96484 0.96905 1.32678 0.89438 1.26035 0.98989 0.97163 0.92668 1.69836 1.19418 1.30270 1.20722 0.86206 0.79590 0.81329 0.79115 1.19060 1.20149 1.18333 0.89938 0.94134 0.94181 0.88296 0.84488 0.84874 0.90868 0.90989 0.91123 0.89134 0.85612 0.90425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 9.81 101.05 0.99 1.57 16 2 O -0.31 -7.05 9.77 -18.74 -0.18 -7.23 16 3 C 0.01 0.15 6.71 -38.44 -0.26 -0.11 16 4 C -0.14 -3.15 8.48 -39.16 -0.33 -3.48 16 5 C -0.19 -4.11 5.34 -104.68 -0.56 -4.67 16 6 C 0.00 0.03 5.47 -104.82 -0.57 -0.54 16 7 C -0.10 -1.63 9.28 -39.16 -0.36 -2.00 16 8 C -0.04 -0.51 6.31 -39.55 -0.25 -0.76 16 9 Cl -0.08 -0.99 28.95 -51.86 -1.50 -2.49 16 10 C -0.11 -1.51 9.47 -39.45 -0.37 -1.88 16 11 C -0.11 -1.54 5.88 -104.61 -0.62 -2.16 16 12 C -0.11 -1.22 9.83 36.00 0.35 -0.87 16 13 C 0.09 1.62 7.09 -39.00 -0.28 1.34 16 14 F -0.13 -2.44 15.08 2.25 0.03 -2.41 16 15 C -0.08 -1.88 8.77 -39.65 -0.35 -2.23 16 16 C -0.16 -3.95 8.61 -39.33 -0.34 -4.29 16 17 C 0.11 2.90 5.58 -106.66 -0.60 2.31 16 18 C -0.43 -11.13 8.70 -37.95 -0.33 -11.46 16 19 H 0.09 2.25 7.64 -52.49 -0.40 1.85 16 20 C 0.07 1.72 5.13 -17.32 -0.09 1.63 16 21 N -0.78 -19.38 10.97 55.55 0.61 -18.77 16 22 Si 0.91 18.08 29.60 -169.99 -5.03 13.05 16 23 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 24 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 25 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 26 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 27 H 0.04 0.65 7.65 -51.93 -0.40 0.25 16 28 H 0.04 0.62 7.67 -51.92 -0.40 0.22 16 29 H 0.10 1.93 6.27 -52.49 -0.33 1.61 16 30 H 0.14 2.16 8.04 -52.49 -0.42 1.74 16 31 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.83 7.63 -51.93 -0.40 0.43 16 34 H 0.07 0.63 8.08 -51.92 -0.42 0.21 16 35 H 0.09 1.98 7.76 -52.49 -0.41 1.57 16 36 H 0.13 3.24 6.17 -52.49 -0.32 2.92 16 37 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 LS Contribution 335.73 15.07 5.06 5.06 Total: -1.00 -27.11 335.73 -8.87 -35.98 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -3.90 Total: 4.43 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: -3.96 Total: -27.61 kcal Atomic # 7 Polarization: -19.38 SS G_CDS: 0.61 Total: -18.77 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: -0.18 Total: -7.23 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.03 Total: -2.41 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.05 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.50 Total: -2.49 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -27.11 -8.87 -35.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242225711.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.583 kcal (2) G-P(sol) polarization free energy of solvation -27.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds