Wall clock time and date at job start Tue Mar 31 2020 13:31:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81398 * 1
3 3 C 1.76197 * 103.00064 * 2 1
4 4 C 1.38990 * 119.98625 * 359.97438 * 3 2 1
5 5 C 1.38293 * 120.27737 * 179.97438 * 4 3 2
6 6 C 1.38174 * 120.24591 * 359.72378 * 5 4 3
7 7 F 1.35098 * 120.02342 * 180.29483 * 6 5 4
8 8 C 1.39898 * 119.96335 * 0.57245 * 6 5 4
9 9 C 1.47889 * 120.13932 * 179.69779 * 8 6 5
10 10 C 1.40007 * 119.88752 * 114.70223 * 9 8 6
11 11 C 1.36202 * 120.12020 * 180.02562 * 10 9 8
12 12 C 1.40966 * 119.87865 * 359.97438 * 11 10 9
13 13 C 1.41000 * 120.11170 * 180.29107 * 12 11 10
14 14 H 1.08002 * 119.99755 * 153.31693 * 13 12 11
15 15 C 1.39979 * 120.00406 * 333.32919 * 13 12 11
16 16 N 1.30823 * 119.99881 * 343.99063 * 15 13 12
17 17 Si 1.86800 * 120.00496 * 163.99620 * 15 13 12
18 18 H 1.48498 * 109.46988 * 59.99502 * 17 15 13
19 19 H 1.48503 * 109.47495 * 179.97438 * 17 15 13
20 20 H 1.48506 * 109.46776 * 299.99520 * 17 15 13
21 21 C 1.40928 * 119.77643 * 0.02562 * 12 11 10
22 22 C 1.50696 * 120.06163 * 179.97438 * 21 12 11
23 23 C 1.36239 * 119.88151 * 359.97438 * 21 12 11
24 24 C 1.38825 * 119.98590 * 179.97438 * 3 2 1
25 25 F 1.35100 * 120.11914 * 359.97438 * 24 3 2
26 26 H 1.09007 * 109.46688 * 60.00353 * 1 2 3
27 27 H 1.09005 * 109.47041 * 179.97438 * 1 2 3
28 28 H 1.08993 * 109.46965 * 300.00142 * 1 2 3
29 29 H 1.08001 * 119.85989 * 0.02562 * 4 3 2
30 30 H 1.08001 * 119.87443 * 179.97438 * 5 4 3
31 31 H 1.08005 * 119.94042 * 0.02562 * 10 9 8
32 32 H 1.08001 * 120.05898 * 180.02562 * 11 10 9
33 33 H 0.97000 * 120.00022 * 179.97438 * 16 15 13
34 34 H 1.08991 * 109.47160 * 89.99700 * 22 21 12
35 35 H 1.08994 * 109.47256 * 210.00093 * 22 21 12
36 36 H 1.09003 * 109.46671 * 329.99484 * 22 21 12
37 37 H 1.07996 * 119.94614 * 179.97438 * 23 21 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 6 2.2104 1.7168 0.0000
4 6 1.1936 2.6645 -0.0005
5 6 1.4979 4.0135 0.0000
6 6 2.8154 4.4299 0.0068
7 9 3.1075 5.7489 0.0133
8 6 3.8469 3.4848 0.0011
9 6 5.2584 3.9261 0.0016
10 6 6.0769 3.6448 1.1022
11 6 7.3774 4.0495 1.1079
12 6 7.8990 4.7522 0.0028
13 6 9.2463 5.1681 0.0009
14 1 9.7686 5.3026 -0.9348
15 6 9.9070 5.4064 1.2117
16 7 9.2188 5.5524 2.3147
17 14 11.7713 5.5162 1.2527
18 1 12.2213 6.6256 0.3741
19 1 12.2216 5.7737 2.6442
20 1 12.3531 4.2371 0.7724
21 6 7.0709 5.0328 -1.1024
22 6 7.6218 5.7841 -2.2869
23 6 5.7714 4.6236 -1.0982
24 6 3.5381 2.1224 0.0005
25 9 4.5278 1.2028 0.0016
26 1 -0.3633 0.5138 -0.8901
27 1 -0.3633 -1.0277 -0.0005
28 1 -0.3633 0.5138 0.8899
29 1 0.1617 2.3460 -0.0005
30 1 0.7027 4.7443 -0.0008
31 1 5.6763 3.1060 1.9481
32 1 8.0080 3.8316 1.9572
33 1 9.6766 5.7172 3.1538
34 1 8.0330 5.0765 -3.0067
35 1 6.8229 6.3576 -2.7570
36 1 8.4078 6.4618 -1.9537
37 1 5.1358 4.8384 -1.9444
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001243212906.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:31:31
Heat of formation + Delta-G solvation = -55.425351 kcal
Electronic energy + Delta-G solvation = -23668.797293 eV
Core-core repulsion = 19944.443175 eV
Total energy + Delta-G solvation = -3724.354118 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 320.074 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-48.53002 -48.50166 -38.68915 -37.59693 -34.01166 -32.34500 -30.86667 -30.25573
-29.49759 -28.55782 -26.23384 -24.96450 -22.77901 -22.62840 -20.77246 -19.60648
-17.90111 -17.40879 -17.21914 -16.80393 -15.70748 -15.52069 -15.30506 -14.96015
-14.87128 -14.53164 -13.92234 -13.91518 -13.87361 -13.79166 -13.07211 -12.83570
-12.69799 -12.58001 -12.03031 -11.98840 -11.88571 -11.82094 -11.44510 -11.20479
-11.18316 -10.92850 -10.64382 -10.47830 -10.35051 -9.65445 -9.51536 -9.38409
-9.25000 -8.61187 -7.45462 -7.40330 -7.27076 -6.86447 -4.44803 1.01097
1.15142 1.35306 2.25509 2.63016 3.01203 3.03203 3.05034 3.10683
3.49295 3.84480 4.13221 4.46779 4.61673 4.76677 4.81610 4.82492
5.03578 5.22488 5.39830 5.53127 5.76141 5.93245 5.99662 6.17076
6.20543 6.24624 6.27145 6.38762 6.65358 6.68240 6.88945 6.94511
7.02703 7.17600 7.30190 7.58398 7.79495 7.95383 7.99632 8.19709
8.52027 8.77204 8.87782 10.05575
Molecular weight = 320.07amu
Principal moments of inertia in cm(-1)
A = 0.021207 B = 0.003442 C = 0.003222
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1319.983153 B = 8133.844180 C = 8689.417055
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 S -0.098 6.098
3 C -0.139 4.139
4 C -0.101 4.101
5 C -0.148 4.148
6 C 0.120 3.880
7 F -0.124 7.124
8 C -0.034 4.034
9 C -0.214 4.214
10 C -0.068 4.068
11 C -0.166 4.166
12 C 0.127 3.873
13 C -0.448 4.448
14 H 0.083 0.917
15 C 0.074 3.926
16 N -0.782 5.782
17 Si 0.910 3.090
18 H -0.264 1.264
19 H -0.277 1.277
20 H -0.262 1.262
21 C -0.201 4.201
22 C -0.084 4.084
23 C -0.050 4.050
24 C 0.142 3.858
25 F -0.115 7.115
26 H 0.084 0.916
27 H 0.108 0.892
28 H 0.084 0.916
29 H 0.136 0.864
30 H 0.139 0.861
31 H 0.086 0.914
32 H 0.119 0.881
33 H 0.284 0.716
34 H 0.042 0.958
35 H 0.038 0.962
36 H 0.062 0.938
37 H 0.087 0.913
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.810 -5.677 -2.558 15.149
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.318 4.318
2 S 0.143 5.857
3 C -0.252 4.252
4 C -0.125 4.125
5 C -0.169 4.169
6 C 0.098 3.902
7 F -0.102 7.102
8 C -0.038 4.038
9 C -0.216 4.216
10 C -0.086 4.086
11 C -0.185 4.185
12 C 0.124 3.876
13 C -0.476 4.476
14 H 0.101 0.899
15 C -0.145 4.145
16 N -0.406 5.406
17 Si 0.734 3.266
18 H -0.188 1.188
19 H -0.202 1.202
20 H -0.186 1.186
21 C -0.202 4.202
22 C -0.141 4.141
23 C -0.068 4.068
24 C 0.117 3.883
25 F -0.093 7.093
26 H 0.103 0.897
27 H 0.126 0.874
28 H 0.103 0.897
29 H 0.153 0.847
30 H 0.157 0.843
31 H 0.105 0.895
32 H 0.137 0.863
33 H 0.095 0.905
34 H 0.060 0.940
35 H 0.057 0.943
36 H 0.080 0.920
37 H 0.105 0.895
Dipole moment (debyes) X Y Z Total
from point charges -13.082 -6.659 -2.295 14.857
hybrid contribution 0.074 1.310 0.229 1.332
sum -13.008 -5.349 -2.065 14.215
Atomic orbital electron populations
1.23702 0.95365 1.07048 1.05635 1.85706 1.05501 1.01646 1.92880
1.21661 0.94769 0.98188 1.10584 1.20670 0.97818 0.91562 1.02444
1.20916 0.94918 0.96376 1.04668 1.17625 0.92196 0.78203 1.02182
1.91528 1.94262 1.30981 1.93406 1.18972 0.95222 0.89772 0.99814
1.17596 0.89911 1.15004 0.99049 1.20327 0.94271 0.98750 0.95299
1.20927 0.94482 1.02238 1.00877 1.17561 0.92394 0.87541 0.90109
1.19624 0.96022 1.38603 0.93367 0.89860 1.26012 1.01073 0.92381
0.95051 1.69815 1.38262 1.32321 1.00240 0.86322 0.81921 0.80057
0.78251 1.18839 1.20212 1.18636 1.19390 0.93735 1.07913 0.99146
1.20399 0.99768 0.98505 0.95441 1.20054 0.94753 0.96680 0.95341
1.16984 0.82826 0.85828 1.02699 1.91535 1.60155 1.64408 1.93231
0.89713 0.87379 0.89701 0.84668 0.84320 0.89531 0.86287 0.90508
0.93969 0.94300 0.91955 0.89456
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.11 9.15 101.05 0.92 -0.19 16
2 S -0.10 -1.24 22.16 -107.50 -2.38 -3.62 16
3 C -0.14 -2.07 6.11 -39.09 -0.24 -2.30 16
4 C -0.10 -1.26 9.36 -39.28 -0.37 -1.62 16
5 C -0.15 -1.99 10.00 -39.58 -0.40 -2.39 16
6 C 0.12 2.09 7.24 -38.98 -0.28 1.81 16
7 F -0.12 -2.34 16.68 2.25 0.04 -2.30 16
8 C -0.03 -0.68 5.31 -104.78 -0.56 -1.23 16
9 C -0.21 -4.92 4.72 -104.63 -0.49 -5.41 16
10 C -0.07 -1.64 9.49 -39.65 -0.38 -2.02 16
11 C -0.17 -4.32 8.62 -39.28 -0.34 -4.66 16
12 C 0.13 3.32 5.56 -106.80 -0.59 2.73 16
13 C -0.45 -11.44 8.08 -37.88 -0.31 -11.75 16
14 H 0.08 2.02 6.89 -52.49 -0.36 1.66 16
15 C 0.07 1.81 5.16 -17.33 -0.09 1.72 16
16 N -0.78 -19.73 10.97 55.55 0.61 -19.12 16
17 Si 0.91 18.12 29.59 -169.99 -5.03 13.09 16
18 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16
19 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16
20 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16
21 C -0.20 -4.86 5.90 -104.33 -0.62 -5.47 16
22 C -0.08 -1.75 9.38 36.00 0.34 -1.41 16
23 C -0.05 -1.16 9.14 -39.65 -0.36 -1.52 16
24 C 0.14 2.60 7.22 -38.82 -0.28 2.32 16
25 F -0.12 -2.30 16.15 2.25 0.04 -2.26 16
26 H 0.08 0.55 7.74 -51.92 -0.40 0.15 16
27 H 0.11 0.62 8.14 -51.92 -0.42 0.19 16
28 H 0.08 0.56 7.74 -51.93 -0.40 0.16 16
29 H 0.14 1.19 5.85 -52.49 -0.31 0.89 16
30 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16
31 H 0.09 1.97 8.06 -52.48 -0.42 1.54 16
32 H 0.12 3.17 6.23 -52.49 -0.33 2.84 16
33 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16
34 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16
35 H 0.04 0.72 8.08 -51.93 -0.42 0.30 16
36 H 0.06 1.30 6.79 -51.93 -0.35 0.95 16
37 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16
LS Contribution 335.37 15.07 5.05 5.05
Total: -1.00 -27.89 335.37 -9.53 -37.41
By element:
Atomic # 1 Polarization: 6.98 SS G_CDS: -3.82 Total: 3.16 kcal
Atomic # 6 Polarization: -27.37 SS G_CDS: -4.03 Total: -31.41 kcal
Atomic # 7 Polarization: -19.73 SS G_CDS: 0.61 Total: -19.12 kcal
Atomic # 9 Polarization: -4.64 SS G_CDS: 0.07 Total: -4.57 kcal
Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.09 kcal
Atomic # 16 Polarization: -1.24 SS G_CDS: -2.38 Total: -3.62 kcal
Total LS contribution 5.05 Total: 5.05 kcal
Total: -27.89 -9.53 -37.41 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001243212906.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -18.010 kcal
(2) G-P(sol) polarization free energy of solvation -27.886 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.897 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.529 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.415 kcal
(6) G-S(sol) free energy of system = (1) + (5) -55.425 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds