Wall clock time and date at job start Tue Mar 31 2020 13:31:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81398 * 1
3 3 C 1.76197 * 103.00064 * 2 1
4 4 C 1.38990 * 119.98625 * 359.97438 * 3 2 1
5 5 C 1.38293 * 120.27737 * 179.97438 * 4 3 2
6 6 C 1.38174 * 120.24591 * 359.72378 * 5 4 3
7 7 F 1.35098 * 120.02342 * 180.29483 * 6 5 4
8 8 C 1.39898 * 119.96335 * 0.57245 * 6 5 4
9 9 C 1.47889 * 120.13932 * 179.69779 * 8 6 5
10 10 C 1.40007 * 119.88752 * 114.70223 * 9 8 6
11 11 C 1.36202 * 120.12020 * 180.02562 * 10 9 8
12 12 C 1.40966 * 119.87865 * 359.97438 * 11 10 9
13 13 C 1.41000 * 120.11170 * 180.29107 * 12 11 10
14 14 H 1.08002 * 119.99755 * 153.31693 * 13 12 11
15 15 C 1.39979 * 120.00406 * 333.32919 * 13 12 11
16 16 N 1.30823 * 119.99881 * 343.99063 * 15 13 12
17 17 Si 1.86800 * 120.00496 * 163.99620 * 15 13 12
18 18 H 1.48498 * 109.46988 * 59.99502 * 17 15 13
19 19 H 1.48503 * 109.47495 * 179.97438 * 17 15 13
20 20 H 1.48506 * 109.46776 * 299.99520 * 17 15 13
21 21 C 1.40928 * 119.77643 * 0.02562 * 12 11 10
22 22 C 1.50696 * 120.06163 * 179.97438 * 21 12 11
23 23 C 1.36239 * 119.88151 * 359.97438 * 21 12 11
24 24 C 1.38825 * 119.98590 * 179.97438 * 3 2 1
25 25 F 1.35100 * 120.11914 * 359.97438 * 24 3 2
26 26 H 1.09007 * 109.46688 * 60.00353 * 1 2 3
27 27 H 1.09005 * 109.47041 * 179.97438 * 1 2 3
28 28 H 1.08993 * 109.46965 * 300.00142 * 1 2 3
29 29 H 1.08001 * 119.85989 * 0.02562 * 4 3 2
30 30 H 1.08001 * 119.87443 * 179.97438 * 5 4 3
31 31 H 1.08005 * 119.94042 * 0.02562 * 10 9 8
32 32 H 1.08001 * 120.05898 * 180.02562 * 11 10 9
33 33 H 0.97000 * 120.00022 * 179.97438 * 16 15 13
34 34 H 1.08991 * 109.47160 * 89.99700 * 22 21 12
35 35 H 1.08994 * 109.47256 * 210.00093 * 22 21 12
36 36 H 1.09003 * 109.46671 * 329.99484 * 22 21 12
37 37 H 1.07996 * 119.94614 * 179.97438 * 23 21 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 6 2.2104 1.7168 0.0000
4 6 1.1936 2.6645 -0.0005
5 6 1.4979 4.0135 0.0000
6 6 2.8154 4.4299 0.0068
7 9 3.1075 5.7489 0.0133
8 6 3.8469 3.4848 0.0011
9 6 5.2584 3.9261 0.0016
10 6 6.0769 3.6448 1.1022
11 6 7.3774 4.0495 1.1079
12 6 7.8990 4.7522 0.0028
13 6 9.2463 5.1681 0.0009
14 1 9.7686 5.3026 -0.9348
15 6 9.9070 5.4064 1.2117
16 7 9.2188 5.5524 2.3147
17 14 11.7713 5.5162 1.2527
18 1 12.2213 6.6256 0.3741
19 1 12.2216 5.7737 2.6442
20 1 12.3531 4.2371 0.7724
21 6 7.0709 5.0328 -1.1024
22 6 7.6218 5.7841 -2.2869
23 6 5.7714 4.6236 -1.0982
24 6 3.5381 2.1224 0.0005
25 9 4.5278 1.2028 0.0016
26 1 -0.3633 0.5138 -0.8901
27 1 -0.3633 -1.0277 -0.0005
28 1 -0.3633 0.5138 0.8899
29 1 0.1617 2.3460 -0.0005
30 1 0.7027 4.7443 -0.0008
31 1 5.6763 3.1060 1.9481
32 1 8.0080 3.8316 1.9572
33 1 9.6766 5.7172 3.1538
34 1 8.0330 5.0765 -3.0067
35 1 6.8229 6.3576 -2.7570
36 1 8.4078 6.4618 -1.9537
37 1 5.1358 4.8384 -1.9444
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001243212906.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:31:30
Heat of formation + Delta-G solvation = -67.243769 kcal
Electronic energy + Delta-G solvation = -23669.309778 eV
Core-core repulsion = 19944.443175 eV
Total energy + Delta-G solvation = -3724.866603 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 320.074 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-49.96109 -49.88953 -40.16834 -39.19659 -35.79379 -33.99330 -32.52994 -31.46391
-30.79522 -29.61986 -27.99624 -26.66070 -24.22753 -23.92451 -22.55098 -21.33367
-19.28160 -19.10480 -18.53441 -18.10809 -17.32960 -16.96265 -16.77031 -16.30312
-16.17741 -15.84997 -15.61311 -15.53178 -15.19164 -14.51328 -14.47543 -14.34082
-14.00977 -13.72303 -13.69906 -13.46489 -13.23452 -13.18139 -13.04278 -12.87982
-12.83080 -12.54080 -12.27507 -12.10093 -11.45339 -11.31906 -11.25877 -11.07127
-10.60706 -9.99172 -9.34659 -9.14332 -8.68244 -8.42589 -6.36726 -0.22778
-0.10424 0.39177 0.85644 1.11733 1.37094 1.44331 1.48169 1.51313
2.17526 2.23503 2.65650 2.88129 3.38318 3.57709 3.62075 3.90821
3.98628 4.33066 4.34133 4.34440 4.36137 4.56740 4.67758 4.72058
4.81037 4.88696 4.92192 4.94742 4.99498 5.01064 5.10462 5.21838
5.31070 5.41239 5.65046 5.71169 5.93944 6.07179 6.09172 6.30224
6.61305 6.87205 6.97803 8.26978
Molecular weight = 320.07amu
Principal moments of inertia in cm(-1)
A = 0.021207 B = 0.003442 C = 0.003222
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1319.983153 B = 8133.844180 C = 8689.417055
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 S -0.139 6.139
3 C -0.132 4.132
4 C -0.079 4.079
5 C -0.125 4.125
6 C 0.100 3.900
7 F -0.139 7.139
8 C -0.070 4.070
9 C -0.204 4.204
10 C -0.082 4.082
11 C -0.189 4.189
12 C 0.094 3.906
13 C -0.479 4.479
14 H 0.087 0.913
15 C 0.033 3.967
16 N -0.819 5.819
17 Si 0.984 3.016
18 H -0.255 1.255
19 H -0.269 1.269
20 H -0.260 1.260
21 C -0.214 4.214
22 C -0.078 4.078
23 C -0.064 4.064
24 C 0.114 3.886
25 F -0.136 7.136
26 H 0.103 0.897
27 H 0.129 0.871
28 H 0.102 0.898
29 H 0.186 0.814
30 H 0.181 0.819
31 H 0.090 0.910
32 H 0.102 0.898
33 H 0.290 0.710
34 H 0.055 0.945
35 H 0.059 0.941
36 H 0.055 0.945
37 H 0.106 0.894
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.059 -6.075 -3.420 18.429
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.304 4.304
2 S 0.102 5.898
3 C -0.246 4.246
4 C -0.102 4.102
5 C -0.145 4.145
6 C 0.078 3.922
7 F -0.117 7.117
8 C -0.073 4.073
9 C -0.205 4.205
10 C -0.101 4.101
11 C -0.208 4.208
12 C 0.091 3.909
13 C -0.507 4.507
14 H 0.105 0.895
15 C -0.183 4.183
16 N -0.444 5.444
17 Si 0.804 3.196
18 H -0.179 1.179
19 H -0.193 1.193
20 H -0.185 1.185
21 C -0.215 4.215
22 C -0.135 4.135
23 C -0.082 4.082
24 C 0.089 3.911
25 F -0.115 7.115
26 H 0.122 0.878
27 H 0.148 0.852
28 H 0.121 0.879
29 H 0.203 0.797
30 H 0.198 0.802
31 H 0.108 0.892
32 H 0.120 0.880
33 H 0.101 0.899
34 H 0.074 0.926
35 H 0.078 0.922
36 H 0.074 0.926
37 H 0.124 0.876
Dipole moment (debyes) X Y Z Total
from point charges -16.351 -7.070 -3.165 18.093
hybrid contribution 0.728 1.280 0.480 1.549
sum -15.624 -5.790 -2.685 16.877
Atomic orbital electron populations
1.23905 0.90000 1.09115 1.07407 1.85975 1.11326 1.00134 1.92347
1.21896 0.93712 1.00167 1.08786 1.21290 0.99398 0.90462 0.99062
1.21355 0.93778 0.97762 1.01630 1.17887 0.93424 0.77183 1.03685
1.91488 1.94559 1.31932 1.93750 1.18897 0.93974 0.91176 1.03292
1.17931 0.91832 1.12878 0.97892 1.20477 0.94157 0.99163 0.96281
1.20902 0.95222 1.03739 1.00984 1.17910 0.93483 0.88519 0.90970
1.19846 0.96364 1.40241 0.94267 0.89469 1.26887 1.05822 0.91371
0.94214 1.69884 1.40276 1.33300 1.00960 0.85219 0.75607 0.80111
0.78639 1.17901 1.19302 1.18464 1.19858 0.94106 1.07818 0.99741
1.20379 1.00178 0.98501 0.94450 1.20341 0.94765 0.96965 0.96104
1.17218 0.84062 0.85061 1.04765 1.91473 1.61323 1.64981 1.93685
0.87782 0.85244 0.87897 0.79717 0.80190 0.89184 0.88040 0.89947
0.92585 0.92165 0.92642 0.87597
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.30 9.15 113.37 1.04 -0.26 16
2 S -0.14 -3.16 22.16 -56.49 -1.25 -4.42 16
3 C -0.13 -3.63 6.11 22.59 0.14 -3.49 16
4 C -0.08 -1.57 9.36 22.46 0.21 -1.36 16
5 C -0.13 -2.85 10.00 22.27 0.22 -2.62 16
6 C 0.10 3.38 7.24 22.66 0.16 3.54 16
7 F -0.14 -5.20 16.68 44.97 0.75 -4.45 16
8 C -0.07 -2.80 5.31 -19.97 -0.11 -2.91 16
9 C -0.20 -9.77 4.72 -19.87 -0.09 -9.86 16
10 C -0.08 -4.26 9.49 22.22 0.21 -4.05 16
11 C -0.19 -10.57 8.62 22.46 0.19 -10.38 16
12 C 0.09 5.20 5.56 -21.28 -0.12 5.08 16
13 C -0.48 -25.63 8.08 23.37 0.19 -25.44 16
14 H 0.09 4.41 6.89 -2.91 -0.02 4.39 16
15 C 0.03 1.67 5.16 85.26 0.44 2.11 16
16 N -0.82 -43.45 10.97 21.83 0.24 -43.21 16
17 Si 0.98 38.08 29.59 68.60 2.03 40.11 16
18 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16
19 H -0.27 -9.89 7.11 99.48 0.71 -9.19 16
20 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16
21 C -0.21 -10.75 5.90 -19.67 -0.12 -10.87 16
22 C -0.08 -3.28 9.38 71.23 0.67 -2.61 16
23 C -0.06 -3.04 9.14 22.23 0.20 -2.83 16
24 C 0.11 4.20 7.22 22.76 0.16 4.36 16
25 F -0.14 -5.68 16.15 44.97 0.73 -4.96 16
26 H 0.10 0.68 7.74 -2.39 -0.02 0.66 16
27 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16
28 H 0.10 0.70 7.74 -2.39 -0.02 0.68 16
29 H 0.19 1.89 5.85 -2.91 -0.02 1.87 16
30 H 0.18 2.65 8.06 -2.91 -0.02 2.63 16
31 H 0.09 4.42 8.06 -2.91 -0.02 4.39 16
32 H 0.10 5.88 6.23 -2.91 -0.02 5.86 16
33 H 0.29 13.91 8.30 -92.71 -0.77 13.15 16
34 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16
35 H 0.06 2.21 8.08 -2.39 -0.02 2.19 16
36 H 0.05 2.36 6.79 -2.39 -0.02 2.35 16
37 H 0.11 4.54 8.06 -2.91 -0.02 4.52 16
Total: -1.00 -67.05 335.37 7.02 -60.04
By element:
Atomic # 1 Polarization: 17.37 SS G_CDS: 1.11 Total: 18.49 kcal
Atomic # 6 Polarization: -65.01 SS G_CDS: 3.41 Total: -61.61 kcal
Atomic # 7 Polarization: -43.45 SS G_CDS: 0.24 Total: -43.21 kcal
Atomic # 9 Polarization: -10.88 SS G_CDS: 1.48 Total: -9.41 kcal
Atomic # 14 Polarization: 38.08 SS G_CDS: 2.03 Total: 40.11 kcal
Atomic # 16 Polarization: -3.16 SS G_CDS: -1.25 Total: -4.42 kcal
Total: -67.05 7.02 -60.04 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001243212906.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -7.205 kcal
(2) G-P(sol) polarization free energy of solvation -67.054 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.259 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.015 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.038 kcal
(6) G-S(sol) free energy of system = (1) + (5) -67.244 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds