Wall clock time and date at job start Tue Mar 31 2020 13:31:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81398 * 1
3 3 C 1.76201 * 102.99781 * 2 1
4 4 C 1.39380 * 119.95210 * 90.00245 * 3 2 1
5 5 F 1.35103 * 119.97682 * 359.97438 * 4 3 2
6 6 C 1.37853 * 120.04821 * 180.02562 * 4 3 2
7 7 C 1.39795 * 119.95245 * 359.97438 * 6 4 3
8 8 C 1.47766 * 120.04777 * 179.97438 * 7 6 4
9 9 C 1.40077 * 119.89312 * 0.27202 * 8 7 6
10 10 C 1.36165 * 120.11106 * 180.27628 * 9 8 7
11 11 C 1.40990 * 119.88556 * 359.72480 * 10 9 8
12 12 C 1.40959 * 120.10502 * 180.02562 * 11 10 9
13 13 H 1.08007 * 119.99782 * 205.68563 * 12 11 10
14 14 C 1.39925 * 120.00333 * 25.68596 * 12 11 10
15 15 N 1.30848 * 119.99830 * 15.50251 * 14 12 11
16 16 Si 1.86802 * 120.00134 * 195.50795 * 14 12 11
17 17 H 1.48503 * 109.47249 * 89.99402 * 16 14 12
18 18 H 1.48491 * 109.47050 * 209.99764 * 16 14 12
19 19 H 1.48506 * 109.46840 * 329.99956 * 16 14 12
20 20 C 1.40953 * 119.78464 * 0.02562 * 11 10 9
21 21 C 1.50699 * 120.05720 * 180.02562 * 20 11 10
22 22 C 1.36186 * 119.88561 * 0.02562 * 20 11 10
23 23 C 1.39786 * 119.90223 * 0.24853 * 7 6 4
24 24 C 1.37851 * 119.95175 * 359.53682 * 23 7 6
25 25 F 1.35098 * 119.98015 * 180.21127 * 24 23 7
26 26 H 1.09000 * 109.46970 * 180.02562 * 1 2 3
27 27 H 1.09002 * 109.47112 * 299.99758 * 1 2 3
28 28 H 1.08996 * 109.47839 * 60.00135 * 1 2 3
29 29 H 1.08005 * 120.02236 * 179.97438 * 6 4 3
30 30 H 1.07995 * 119.94720 * 0.02795 * 9 8 7
31 31 H 1.07998 * 120.05699 * 179.70926 * 10 9 8
32 32 H 0.97004 * 119.99704 * 180.02562 * 15 14 12
33 33 H 1.09007 * 109.47022 * 269.98042 * 21 20 11
34 34 H 1.09002 * 109.46685 * 29.97465 * 21 20 11
35 35 H 1.08995 * 109.47336 * 149.97705 * 21 20 11
36 36 H 1.08009 * 119.94348 * 179.97438 * 22 20 11
37 37 H 1.08004 * 120.02811 * 179.72840 * 23 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 6 2.2103 1.7169 0.0000
4 6 2.3668 2.3949 1.2076
5 9 2.2141 1.7354 2.3768
6 6 2.6764 3.7382 1.2100
7 6 2.8338 4.4203 -0.0001
8 6 3.1650 5.8604 -0.0001
9 6 3.3266 6.5395 1.2143
10 6 3.6263 7.8678 1.2195
11 6 3.7797 8.5582 -0.0002
12 6 4.0905 9.9331 -0.0001
13 1 3.8123 10.5496 -0.8422
14 6 4.7593 10.4992 1.0907
15 7 5.3614 9.7290 1.9604
16 14 4.7926 12.3545 1.3055
17 1 3.6247 12.7798 2.1182
18 1 6.0464 12.7505 1.9955
19 1 4.7330 13.0082 -0.0266
20 6 3.6212 7.8690 -1.2195
21 6 3.7843 8.6008 -2.5268
22 6 3.3204 6.5408 -1.2142
23 6 2.6717 3.7394 -1.2101
24 6 2.3665 2.3951 -1.2078
25 9 2.2140 1.7354 -2.3769
26 1 -0.3633 -1.0277 0.0005
27 1 -0.3633 0.5138 0.8900
28 1 -0.3634 0.5138 -0.8899
29 1 2.7972 4.2633 2.1460
30 1 3.2094 6.0097 2.1481
31 1 3.7461 8.3916 2.1564
32 1 5.8248 10.1215 2.7169
33 1 2.8212 9.0039 -2.8401
34 1 4.4958 9.4168 -2.4000
35 1 4.1538 7.9111 -3.2856
36 1 3.1984 6.0119 -2.1480
37 1 2.7885 4.2653 -2.1461
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001243689949.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:31:41
Heat of formation + Delta-G solvation = -58.371550 kcal
Electronic energy + Delta-G solvation = -23188.420622 eV
Core-core repulsion = 19463.938747 eV
Total energy + Delta-G solvation = -3724.481875 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 320.074 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-48.82292 -48.77360 -38.98697 -37.49660 -34.22894 -32.40494 -31.04278 -30.05031
-29.15933 -28.71018 -26.52304 -25.28338 -22.90514 -22.70587 -20.75094 -19.69540
-17.89141 -17.72927 -16.90261 -16.85578 -15.84989 -15.77501 -15.31771 -15.13427
-15.09423 -14.45462 -14.14618 -13.90516 -13.74289 -13.45792 -13.20073 -12.92884
-12.84373 -12.57795 -12.23055 -12.20346 -11.94257 -11.61632 -11.52688 -11.39988
-11.25021 -11.23737 -10.78367 -10.75257 -10.25033 -9.90048 -9.64378 -9.55900
-8.79804 -8.54674 -7.72637 -7.70291 -7.36975 -7.15366 -4.69841 0.73757
1.32323 1.75567 2.38526 2.69302 2.83559 2.85793 2.88355 2.95165
3.60938 3.75027 4.05276 4.37096 4.62024 4.96242 5.10001 5.13917
5.14016 5.33081 5.40883 5.67276 5.76487 5.88963 6.01038 6.04904
6.16722 6.22099 6.30702 6.41826 6.46321 6.51939 6.66536 6.77918
6.91965 7.02520 7.11980 7.30264 7.56519 7.69652 7.78564 7.90074
8.22659 8.44496 8.57478 9.71070
Molecular weight = 320.07amu
Principal moments of inertia in cm(-1)
A = 0.026077 B = 0.002944 C = 0.002700
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1073.481282 B = 9510.063136 C =10366.786685
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 S -0.131 6.131
3 C -0.256 4.256
4 C 0.185 3.815
5 F -0.126 7.126
6 C -0.207 4.207
7 C 0.112 3.888
8 C -0.223 4.223
9 C -0.066 4.066
10 C -0.171 4.171
11 C 0.127 3.873
12 C -0.424 4.424
13 H 0.090 0.910
14 C 0.069 3.931
15 N -0.765 5.765
16 Si 0.916 3.084
17 H -0.263 1.263
18 H -0.274 1.274
19 H -0.258 1.258
20 C -0.201 4.201
21 C -0.088 4.088
22 C -0.046 4.046
23 C -0.209 4.209
24 C 0.185 3.815
25 F -0.126 7.126
26 H 0.101 0.899
27 H 0.075 0.925
28 H 0.075 0.925
29 H 0.143 0.857
30 H 0.096 0.904
31 H 0.123 0.877
32 H 0.289 0.711
33 H 0.044 0.956
34 H 0.062 0.938
35 H 0.041 0.959
36 H 0.097 0.903
37 H 0.142 0.858
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.010 -7.060 -1.818 8.846
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.307 4.307
2 S 0.100 5.900
3 C -0.370 4.370
4 C 0.163 3.837
5 F -0.104 7.104
6 C -0.228 4.228
7 C 0.112 3.888
8 C -0.224 4.224
9 C -0.084 4.084
10 C -0.190 4.190
11 C 0.123 3.877
12 C -0.450 4.450
13 H 0.108 0.892
14 C -0.153 4.153
15 N -0.387 5.387
16 Si 0.740 3.260
17 H -0.188 1.188
18 H -0.198 1.198
19 H -0.182 1.182
20 C -0.202 4.202
21 C -0.145 4.145
22 C -0.064 4.064
23 C -0.229 4.229
24 C 0.163 3.837
25 F -0.104 7.104
26 H 0.119 0.881
27 H 0.095 0.905
28 H 0.094 0.906
29 H 0.160 0.840
30 H 0.114 0.886
31 H 0.141 0.859
32 H 0.100 0.900
33 H 0.063 0.937
34 H 0.081 0.919
35 H 0.060 0.940
36 H 0.115 0.885
37 H 0.159 0.841
Dipole moment (debyes) X Y Z Total
from point charges -4.197 -8.028 -1.601 9.200
hybrid contribution -0.714 1.601 0.264 1.773
sum -4.911 -6.427 -1.337 8.198
Atomic orbital electron populations
1.23607 0.95965 1.06038 1.05101 1.85245 1.05932 1.01325 1.97473
1.21337 1.22966 0.99194 0.93455 1.17244 0.96569 0.89754 0.80159
1.91515 1.92524 1.81045 1.45307 1.21161 1.09444 0.91988 1.00186
1.18699 0.86604 0.93319 0.90203 1.17884 1.20412 0.90030 0.94101
1.20553 0.97837 0.94869 0.95170 1.21034 1.05628 0.93618 0.98743
1.17696 0.86493 0.92858 0.90617 1.19891 1.28639 0.94145 1.02350
0.89230 1.26145 0.93012 1.01676 0.94454 1.69818 1.20589 1.38391
1.09947 0.86148 0.78934 0.80902 0.80055 1.18807 1.19842 1.18153
1.19453 1.12412 0.93594 0.94751 1.20443 1.00432 0.99495 0.94110
1.20319 0.96831 0.93893 0.95359 1.21136 1.09728 0.91974 1.00094
1.17239 0.96619 0.89736 0.80148 1.91511 1.92538 1.81053 1.45318
0.88077 0.90549 0.90554 0.83951 0.88625 0.85937 0.89958 0.93679
0.91910 0.93966 0.88524 0.84058
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.58 10.72 101.05 1.08 -0.50 16
2 S -0.13 -1.93 21.51 -107.50 -2.31 -4.24 16
3 C -0.26 -4.25 5.73 -38.73 -0.22 -4.47 16
4 C 0.19 3.10 7.27 -39.30 -0.29 2.81 16
5 F -0.13 -2.05 16.75 2.25 0.04 -2.01 16
6 C -0.21 -3.55 9.39 -39.14 -0.37 -3.92 16
7 C 0.11 2.04 5.88 -104.84 -0.62 1.43 16
8 C -0.22 -4.52 5.90 -104.64 -0.62 -5.14 16
9 C -0.07 -1.39 9.36 -39.64 -0.37 -1.76 16
10 C -0.17 -3.95 8.61 -39.29 -0.34 -4.29 16
11 C 0.13 2.96 5.57 -106.80 -0.59 2.36 16
12 C -0.42 -9.65 8.11 -37.92 -0.31 -9.96 16
13 H 0.09 1.93 6.85 -52.48 -0.36 1.58 16
14 C 0.07 1.50 5.17 -17.34 -0.09 1.41 16
15 N -0.77 -17.31 10.88 55.55 0.60 -16.71 16
16 Si 0.92 16.22 29.59 -169.99 -5.03 11.19 16
17 H -0.26 -4.65 7.11 56.52 0.40 -4.25 16
18 H -0.27 -4.78 7.11 56.52 0.40 -4.38 16
19 H -0.26 -4.51 7.11 56.52 0.40 -4.11 16
20 C -0.20 -4.30 5.90 -104.33 -0.62 -4.92 16
21 C -0.09 -1.61 9.39 36.01 0.34 -1.27 16
22 C -0.05 -0.92 8.99 -39.64 -0.36 -1.28 16
23 C -0.21 -3.52 9.39 -39.14 -0.37 -3.89 16
24 C 0.18 3.07 7.27 -39.29 -0.29 2.78 16
25 F -0.13 -2.02 16.75 2.25 0.04 -1.99 16
26 H 0.10 0.91 8.14 -51.92 -0.42 0.49 16
27 H 0.08 0.86 8.14 -51.92 -0.42 0.43 16
28 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16
29 H 0.14 2.30 6.17 -52.48 -0.32 1.97 16
30 H 0.10 1.80 6.17 -52.49 -0.32 1.48 16
31 H 0.12 2.90 6.14 -52.49 -0.32 2.58 16
32 H 0.29 5.90 8.30 -40.82 -0.34 5.56 16
33 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16
34 H 0.06 1.16 6.76 -51.93 -0.35 0.81 16
35 H 0.04 0.68 8.08 -51.93 -0.42 0.26 16
36 H 0.10 1.71 6.17 -52.48 -0.32 1.39 16
37 H 0.14 2.20 6.17 -52.48 -0.32 1.88 16
LS Contribution 332.80 15.07 5.02 5.02
Total: -1.00 -23.65 332.80 -9.23 -32.88
By element:
Atomic # 1 Polarization: 10.03 SS G_CDS: -3.57 Total: 6.46 kcal
Atomic # 6 Polarization: -26.58 SS G_CDS: -4.01 Total: -30.59 kcal
Atomic # 7 Polarization: -17.31 SS G_CDS: 0.60 Total: -16.71 kcal
Atomic # 9 Polarization: -4.07 SS G_CDS: 0.08 Total: -4.00 kcal
Atomic # 14 Polarization: 16.22 SS G_CDS: -5.03 Total: 11.19 kcal
Atomic # 16 Polarization: -1.93 SS G_CDS: -2.31 Total: -4.24 kcal
Total LS contribution 5.02 Total: 5.02 kcal
Total: -23.65 -9.23 -32.88 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001243689949.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -25.493 kcal
(2) G-P(sol) polarization free energy of solvation -23.645 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.138 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.233 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.879 kcal
(6) G-S(sol) free energy of system = (1) + (5) -58.372 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds