Wall clock time and date at job start Tue Mar 31 2020 13:31:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81398 * 1
3 3 C 1.76201 * 102.99781 * 2 1
4 4 C 1.39380 * 119.95210 * 90.00245 * 3 2 1
5 5 F 1.35103 * 119.97682 * 359.97438 * 4 3 2
6 6 C 1.37853 * 120.04821 * 180.02562 * 4 3 2
7 7 C 1.39795 * 119.95245 * 359.97438 * 6 4 3
8 8 C 1.47766 * 120.04777 * 179.97438 * 7 6 4
9 9 C 1.40077 * 119.89312 * 0.27202 * 8 7 6
10 10 C 1.36165 * 120.11106 * 180.27628 * 9 8 7
11 11 C 1.40990 * 119.88556 * 359.72480 * 10 9 8
12 12 C 1.40959 * 120.10502 * 180.02562 * 11 10 9
13 13 H 1.08007 * 119.99782 * 205.68563 * 12 11 10
14 14 C 1.39925 * 120.00333 * 25.68596 * 12 11 10
15 15 N 1.30848 * 119.99830 * 15.50251 * 14 12 11
16 16 Si 1.86802 * 120.00134 * 195.50795 * 14 12 11
17 17 H 1.48503 * 109.47249 * 89.99402 * 16 14 12
18 18 H 1.48491 * 109.47050 * 209.99764 * 16 14 12
19 19 H 1.48506 * 109.46840 * 329.99956 * 16 14 12
20 20 C 1.40953 * 119.78464 * 0.02562 * 11 10 9
21 21 C 1.50699 * 120.05720 * 180.02562 * 20 11 10
22 22 C 1.36186 * 119.88561 * 0.02562 * 20 11 10
23 23 C 1.39786 * 119.90223 * 0.24853 * 7 6 4
24 24 C 1.37851 * 119.95175 * 359.53682 * 23 7 6
25 25 F 1.35098 * 119.98015 * 180.21127 * 24 23 7
26 26 H 1.09000 * 109.46970 * 180.02562 * 1 2 3
27 27 H 1.09002 * 109.47112 * 299.99758 * 1 2 3
28 28 H 1.08996 * 109.47839 * 60.00135 * 1 2 3
29 29 H 1.08005 * 120.02236 * 179.97438 * 6 4 3
30 30 H 1.07995 * 119.94720 * 0.02795 * 9 8 7
31 31 H 1.07998 * 120.05699 * 179.70926 * 10 9 8
32 32 H 0.97004 * 119.99704 * 180.02562 * 15 14 12
33 33 H 1.09007 * 109.47022 * 269.98042 * 21 20 11
34 34 H 1.09002 * 109.46685 * 29.97465 * 21 20 11
35 35 H 1.08995 * 109.47336 * 149.97705 * 21 20 11
36 36 H 1.08009 * 119.94348 * 179.97438 * 22 20 11
37 37 H 1.08004 * 120.02811 * 179.72840 * 23 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 6 2.2103 1.7169 0.0000
4 6 2.3668 2.3949 1.2076
5 9 2.2141 1.7354 2.3768
6 6 2.6764 3.7382 1.2100
7 6 2.8338 4.4203 -0.0001
8 6 3.1650 5.8604 -0.0001
9 6 3.3266 6.5395 1.2143
10 6 3.6263 7.8678 1.2195
11 6 3.7797 8.5582 -0.0002
12 6 4.0905 9.9331 -0.0001
13 1 3.8123 10.5496 -0.8422
14 6 4.7593 10.4992 1.0907
15 7 5.3614 9.7290 1.9604
16 14 4.7926 12.3545 1.3055
17 1 3.6247 12.7798 2.1182
18 1 6.0464 12.7505 1.9955
19 1 4.7330 13.0082 -0.0266
20 6 3.6212 7.8690 -1.2195
21 6 3.7843 8.6008 -2.5268
22 6 3.3204 6.5408 -1.2142
23 6 2.6717 3.7394 -1.2101
24 6 2.3665 2.3951 -1.2078
25 9 2.2140 1.7354 -2.3769
26 1 -0.3633 -1.0277 0.0005
27 1 -0.3633 0.5138 0.8900
28 1 -0.3634 0.5138 -0.8899
29 1 2.7972 4.2633 2.1460
30 1 3.2094 6.0097 2.1481
31 1 3.7461 8.3916 2.1564
32 1 5.8248 10.1215 2.7169
33 1 2.8212 9.0039 -2.8401
34 1 4.4958 9.4168 -2.4000
35 1 4.1538 7.9111 -3.2856
36 1 3.1984 6.0119 -2.1480
37 1 2.7885 4.2653 -2.1461
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001243689949.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:31:40
Heat of formation + Delta-G solvation = -64.938264 kcal
Electronic energy + Delta-G solvation = -23188.705376 eV
Core-core repulsion = 19463.938747 eV
Total energy + Delta-G solvation = -3724.766629 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 320.074 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-50.13691 -50.08833 -40.48154 -38.99812 -35.80153 -33.92723 -32.57526 -31.43490
-30.59989 -29.72779 -28.06159 -26.81720 -24.39708 -24.09471 -22.31153 -21.22889
-19.33157 -19.21240 -18.26170 -18.21844 -17.33238 -17.14950 -16.68229 -16.50580
-16.40681 -15.85498 -15.50121 -15.46551 -15.08317 -14.55163 -14.40211 -14.38423
-14.04585 -14.01092 -13.66967 -13.59431 -13.35167 -13.02395 -12.99055 -12.90181
-12.72151 -12.67798 -12.21601 -12.16911 -11.54507 -11.45878 -11.21416 -11.13107
-10.22129 -9.88697 -9.34300 -8.96013 -8.86868 -8.72872 -6.37425 -0.62063
-0.04196 0.53057 0.90258 1.17443 1.38963 1.44789 1.51959 1.63300
2.14887 2.30664 2.69770 2.79762 3.25747 3.61575 3.68366 3.69852
4.03903 4.24331 4.28146 4.30834 4.37394 4.59251 4.63707 4.70721
4.74031 4.81222 4.90043 4.94037 5.02800 5.05650 5.10783 5.29155
5.34793 5.49525 5.63417 5.69879 5.94719 6.07481 6.14551 6.27438
6.58444 6.80865 6.93836 8.16833
Molecular weight = 320.07amu
Principal moments of inertia in cm(-1)
A = 0.026077 B = 0.002944 C = 0.002700
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1073.481282 B = 9510.063136 C =10366.786685
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 S -0.152 6.152
3 C -0.247 4.247
4 C 0.179 3.821
5 F -0.123 7.123
6 C -0.201 4.201
7 C 0.097 3.903
8 C -0.220 4.220
9 C -0.074 4.074
10 C -0.196 4.196
11 C 0.097 3.903
12 C -0.458 4.458
13 H 0.091 0.909
14 C 0.033 3.967
15 N -0.804 5.804
16 Si 0.983 3.017
17 H -0.262 1.262
18 H -0.269 1.269
19 H -0.253 1.253
20 C -0.216 4.216
21 C -0.083 4.083
22 C -0.055 4.055
23 C -0.197 4.197
24 C 0.181 3.819
25 F -0.121 7.121
26 H 0.129 0.871
27 H 0.079 0.921
28 H 0.081 0.919
29 H 0.149 0.851
30 H 0.111 0.889
31 H 0.106 0.894
32 H 0.293 0.707
33 H 0.057 0.943
34 H 0.052 0.948
35 H 0.063 0.937
36 H 0.124 0.876
37 H 0.156 0.844
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.116 -8.706 -2.811 11.005
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.296 4.296
2 S 0.079 5.921
3 C -0.360 4.360
4 C 0.157 3.843
5 F -0.101 7.101
6 C -0.221 4.221
7 C 0.096 3.904
8 C -0.221 4.221
9 C -0.092 4.092
10 C -0.215 4.215
11 C 0.094 3.906
12 C -0.485 4.485
13 H 0.109 0.891
14 C -0.185 4.185
15 N -0.428 5.428
16 Si 0.803 3.197
17 H -0.187 1.187
18 H -0.194 1.194
19 H -0.177 1.177
20 C -0.217 4.217
21 C -0.140 4.140
22 C -0.073 4.073
23 C -0.217 4.217
24 C 0.158 3.842
25 F -0.099 7.099
26 H 0.147 0.853
27 H 0.098 0.902
28 H 0.100 0.900
29 H 0.166 0.834
30 H 0.129 0.871
31 H 0.124 0.876
32 H 0.104 0.896
33 H 0.075 0.925
34 H 0.071 0.929
35 H 0.081 0.919
36 H 0.141 0.859
37 H 0.174 0.826
Dipole moment (debyes) X Y Z Total
from point charges -5.309 -9.689 -2.603 11.350
hybrid contribution -0.520 1.644 0.539 1.807
sum -5.829 -8.045 -2.064 10.147
Atomic orbital electron populations
1.23693 0.92312 1.08068 1.05557 1.85339 1.09558 0.99741 1.97494
1.21604 1.20893 1.00227 0.93309 1.17225 0.97006 0.89631 0.80464
1.91525 1.92513 1.80911 1.45135 1.21260 1.08338 0.92286 1.00256
1.18607 0.88173 0.92432 0.91157 1.18112 1.19053 0.91119 0.93845
1.20755 0.97585 0.94408 0.96472 1.21018 1.07531 0.94592 0.98379
1.18041 0.87431 0.93658 0.91474 1.20054 1.30566 0.94462 1.03463
0.89064 1.26895 0.92126 1.05652 0.93803 1.69871 1.21946 1.40111
1.10840 0.85162 0.78825 0.75726 0.79948 1.18691 1.19389 1.17684
1.19856 1.12091 0.94398 0.95387 1.20425 1.00940 0.99422 0.93182
1.20615 0.96548 0.93682 0.96443 1.21258 1.08135 0.92133 1.00168
1.17208 0.96911 0.89669 0.80379 1.91528 1.92488 1.80900 1.44976
0.85289 0.90165 0.90013 0.83371 0.87113 0.87604 0.89554 0.92473
0.92857 0.91851 0.85875 0.82630
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 20.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.46 10.72 113.37 1.22 -1.25 16
2 S -0.15 -4.07 21.51 -56.49 -1.22 -5.29 16
3 C -0.25 -7.57 5.73 22.82 0.13 -7.44 16
4 C 0.18 5.62 7.27 22.45 0.16 5.78 16
5 F -0.12 -3.75 16.75 44.97 0.75 -3.00 16
6 C -0.20 -6.57 9.39 22.56 0.21 -6.36 16
7 C 0.10 3.36 5.88 -20.01 -0.12 3.24 16
8 C -0.22 -8.80 5.90 -19.87 -0.12 -8.91 16
9 C -0.07 -3.17 9.36 22.23 0.21 -2.96 16
10 C -0.20 -9.45 8.61 22.46 0.19 -9.26 16
11 C 0.10 4.70 5.57 -21.27 -0.12 4.58 16
12 C -0.46 -21.76 8.11 23.35 0.19 -21.57 16
13 H 0.09 4.10 6.85 -2.91 -0.02 4.08 16
14 C 0.03 1.50 5.17 85.25 0.44 1.94 16
15 N -0.80 -38.16 10.88 21.82 0.24 -37.92 16
16 Si 0.98 34.09 29.59 68.60 2.03 36.12 16
17 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16
18 H -0.27 -9.02 7.11 99.48 0.71 -8.31 16
19 H -0.25 -8.48 7.11 99.48 0.71 -7.77 16
20 C -0.22 -9.30 5.90 -19.68 -0.12 -9.42 16
21 C -0.08 -2.98 9.39 71.24 0.67 -2.31 16
22 C -0.05 -2.17 8.99 22.23 0.20 -1.97 16
23 C -0.20 -6.14 9.39 22.55 0.21 -5.93 16
24 C 0.18 5.50 7.27 22.46 0.16 5.66 16
25 F -0.12 -3.53 16.75 44.97 0.75 -2.78 16
26 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16
27 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16
28 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16
29 H 0.15 4.61 6.17 -2.91 -0.02 4.60 16
30 H 0.11 4.23 6.17 -2.91 -0.02 4.22 16
31 H 0.11 5.35 6.14 -2.91 -0.02 5.33 16
32 H 0.29 12.57 8.30 -92.70 -0.77 11.80 16
33 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16
34 H 0.05 1.99 6.76 -2.39 -0.02 1.97 16
35 H 0.06 1.95 8.08 -2.39 -0.02 1.93 16
36 H 0.12 4.08 6.17 -2.91 -0.02 4.06 16
37 H 0.16 4.37 6.17 -2.91 -0.02 4.35 16
Total: -1.00 -51.60 332.80 7.21 -44.39
By element:
Atomic # 1 Polarization: 23.51 SS G_CDS: 1.13 Total: 24.64 kcal
Atomic # 6 Polarization: -59.69 SS G_CDS: 3.53 Total: -56.16 kcal
Atomic # 7 Polarization: -38.16 SS G_CDS: 0.24 Total: -37.92 kcal
Atomic # 9 Polarization: -7.28 SS G_CDS: 1.51 Total: -5.78 kcal
Atomic # 14 Polarization: 34.09 SS G_CDS: 2.03 Total: 36.12 kcal
Atomic # 16 Polarization: -4.07 SS G_CDS: -1.22 Total: -5.29 kcal
Total: -51.60 7.21 -44.39 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001243689949.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -20.552 kcal
(2) G-P(sol) polarization free energy of solvation -51.599 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.152 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.214 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.386 kcal
(6) G-S(sol) free energy of system = (1) + (5) -64.938 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds