Wall clock time and date at job start Tue Mar 31 2020 12:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42909 * 113.99551 * 2 1 4 4 O 1.42903 * 109.47027 * 75.00100 * 3 2 1 5 5 C 1.35727 * 117.00069 * 74.99967 * 4 3 2 6 6 C 1.38574 * 120.14404 * 359.97324 * 5 4 3 7 7 C 1.38187 * 120.12876 * 179.97438 * 6 5 4 8 8 C 1.38508 * 120.41099 * 0.02562 * 7 6 5 9 9 C 1.37964 * 120.28266 * 359.78255 * 8 7 6 10 10 Cl 1.73598 * 120.06844 * 180.23703 * 9 8 7 11 11 C 1.39873 * 119.86398 * 0.44762 * 9 8 7 12 12 C 1.47560 * 120.19930 * 179.81022 * 11 9 8 13 13 N 1.33051 * 120.55078 * 302.32483 * 12 11 9 14 14 C 1.31910 * 120.02952 * 180.02562 * 13 12 11 15 15 C 1.39028 * 121.22426 * 359.97438 * 14 13 12 16 16 N 1.31520 * 121.14527 * 0.02562 * 15 14 13 17 17 C 1.34094 * 119.86369 * 359.97438 * 16 15 14 18 18 C 1.40718 * 120.57975 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99618 * 172.19988 * 18 17 16 20 20 C 1.40160 * 120.00199 * 352.20424 * 18 17 16 21 21 N 1.30698 * 119.99724 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99841 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47242 * 89.99665 * 22 20 18 24 24 H 1.48502 * 109.46815 * 209.99609 * 22 20 18 25 25 H 1.48500 * 109.47281 * 329.99526 * 22 20 18 26 26 H 1.08997 * 109.47280 * 299.99796 * 1 2 3 27 27 H 1.09001 * 109.47606 * 60.00251 * 1 2 3 28 28 H 1.09005 * 109.46783 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47092 * 314.99825 * 3 2 1 30 30 H 1.08994 * 109.46713 * 194.99737 * 3 2 1 31 31 H 1.08000 * 119.93113 * 0.02798 * 6 5 4 32 32 H 1.07991 * 119.79536 * 180.02562 * 7 6 5 33 33 H 1.07997 * 119.85845 * 180.02562 * 8 7 6 34 34 H 1.07997 * 119.39166 * 180.02562 * 14 13 12 35 35 H 1.07997 * 119.42752 * 180.28581 * 15 14 13 36 36 H 0.97000 * 119.99772 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 8 1.8853 1.8825 1.3014 5 6 2.7176 1.4139 2.2657 6 6 3.6359 0.4193 1.9692 7 6 4.4835 -0.0573 2.9510 8 6 4.4231 0.4527 4.2374 9 6 3.5181 1.4459 4.5503 10 17 3.4515 2.0853 6.1629 11 6 2.6513 1.9334 3.5667 12 6 1.6776 2.9926 3.8943 13 7 0.7831 2.8130 4.8628 14 6 -0.0829 3.7666 5.1468 15 6 -0.0837 4.9700 4.4506 16 7 0.7793 5.1977 3.4847 17 6 1.6798 4.2591 3.1588 18 6 2.6105 4.4870 2.1283 19 1 3.4096 3.7811 1.9566 20 6 2.5004 5.6300 1.3247 21 7 1.5330 6.4840 1.5322 22 14 3.7363 5.9328 -0.0429 23 1 3.2489 5.3068 -1.2981 24 1 3.8981 7.3945 -0.2491 25 1 5.0445 5.3379 0.3314 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.4941 1.9330 -0.7267 30 1 3.0647 1.2338 -0.2659 31 1 3.6897 0.0165 0.9685 32 1 5.1973 -0.8321 2.7139 33 1 5.0901 0.0740 4.9977 34 1 -0.8042 3.6100 5.9351 35 1 -0.8029 5.7328 4.7103 36 1 1.4566 7.2749 0.9758 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244433815.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:13 Heat of formation + Delta-G solvation = -21.947459 kcal Electronic energy + Delta-G solvation = -25057.309023 eV Core-core repulsion = 21339.910081 eV Total energy + Delta-G solvation = -3717.398942 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.071 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.95642 -38.54616 -37.68391 -36.24949 -35.43898 -34.11114 -32.44258 -31.22734 -29.55030 -28.72836 -27.48133 -26.06492 -25.01568 -23.43255 -21.99277 -21.39067 -20.75291 -18.01226 -17.65905 -16.69429 -16.55071 -15.96926 -15.82193 -15.36059 -14.88272 -14.59192 -14.27073 -14.08776 -13.85104 -13.51394 -13.14687 -12.75738 -12.60753 -12.27198 -12.11409 -11.59661 -11.51303 -11.41087 -11.34051 -11.27187 -10.79458 -10.62438 -10.49861 -10.35880 -10.17692 -9.97795 -9.83354 -9.50832 -9.13767 -8.31972 -7.87816 -7.51130 -7.27033 -6.56159 -4.69174 1.58214 1.80179 2.50569 2.73869 2.91350 2.93717 2.97520 3.24866 3.73278 3.74669 3.82774 4.17475 4.60691 5.10729 5.18132 5.23612 5.39997 5.45774 5.49528 5.55523 5.70909 5.77357 5.83220 5.84419 5.99373 6.17098 6.34124 6.44455 6.62061 6.69968 6.74879 6.86848 6.94375 6.99972 7.06545 7.17353 7.69658 7.90683 8.00317 8.34477 8.65577 9.28626 9.85031 10.02676 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.008829 B = 0.007776 C = 0.005868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3170.738812 B = 3599.920307 C = 4770.290239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.400 6.400 3 C 0.208 3.792 4 O -0.290 6.290 5 C 0.155 3.845 6 C -0.201 4.201 7 C -0.089 4.089 8 C -0.154 4.154 9 C 0.007 3.993 10 Cl -0.062 7.062 11 C 0.008 3.992 12 C -0.024 4.024 13 N -0.398 5.398 14 C -0.129 4.129 15 C 0.092 3.908 16 N -0.462 5.462 17 C 0.235 3.765 18 C -0.375 4.375 19 H 0.088 0.912 20 C 0.065 3.935 21 N -0.702 5.702 22 Si 0.905 3.095 23 H -0.265 1.265 24 H -0.272 1.272 25 H -0.256 1.256 26 H 0.052 0.948 27 H 0.042 0.958 28 H 0.083 0.917 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.131 0.869 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.189 -7.989 -3.943 9.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.320 6.320 3 C 0.094 3.906 4 O -0.204 6.204 5 C 0.108 3.892 6 C -0.220 4.220 7 C -0.108 4.108 8 C -0.173 4.173 9 C -0.021 4.021 10 Cl -0.033 7.033 11 C 0.005 3.995 12 C -0.173 4.173 13 N -0.109 5.109 14 C -0.289 4.289 15 C -0.078 4.078 16 N -0.179 5.179 17 C 0.110 3.890 18 C -0.405 4.405 19 H 0.106 0.894 20 C -0.162 4.162 21 N -0.322 5.322 22 Si 0.728 3.272 23 H -0.190 1.190 24 H -0.197 1.197 25 H -0.180 1.180 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.101 0.899 29 H 0.120 0.880 30 H 0.117 0.883 31 H 0.149 0.851 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.987 -7.661 -3.862 9.085 hybrid contribution 0.265 0.384 -0.544 0.716 sum 3.252 -7.277 -4.406 9.108 Atomic orbital electron populations 1.22772 0.80436 1.02478 1.00816 1.87988 1.20933 1.29171 1.93872 1.24197 0.99358 0.82912 0.84122 1.86508 1.56341 1.58758 1.18805 1.18831 0.89937 0.92147 0.88274 1.21178 0.99327 1.00626 1.00899 1.20689 0.98639 0.99471 0.92016 1.20732 1.00560 0.98568 0.97468 1.20728 0.97652 0.97320 0.86373 1.98336 1.97837 1.86102 1.20981 1.17451 0.96437 0.96355 0.89250 1.20741 1.00686 0.94509 1.01404 1.67743 1.01081 1.30547 1.11548 1.22311 1.04874 0.94342 1.07327 1.23348 0.96325 0.95532 0.92614 1.69542 1.04987 1.29507 1.13818 1.20219 0.90953 0.86549 0.91288 1.19477 1.08543 1.03866 1.08632 0.89445 1.26193 0.96000 0.95361 0.98656 1.70058 1.24530 1.06799 1.30774 0.86344 0.81434 0.78815 0.80641 1.19043 1.19690 1.18007 0.92946 0.93957 0.89867 0.88038 0.88338 0.85116 0.85703 0.85632 0.85934 0.85723 0.90996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.89 101.05 1.10 1.51 16 2 O -0.40 -5.95 10.19 -59.04 -0.60 -6.55 16 3 C 0.21 3.14 6.39 101.05 0.65 3.79 16 4 O -0.29 -5.82 7.91 -42.70 -0.34 -6.15 16 5 C 0.15 3.10 5.37 -38.70 -0.21 2.89 16 6 C -0.20 -3.32 8.77 -39.48 -0.35 -3.67 16 7 C -0.09 -1.34 10.03 -39.50 -0.40 -1.74 16 8 C -0.15 -2.54 9.81 -39.58 -0.39 -2.93 16 9 C 0.01 0.14 6.35 -39.07 -0.25 -0.10 16 10 Cl -0.06 -1.22 27.44 -51.86 -1.42 -2.65 16 11 C 0.01 0.18 4.96 -104.73 -0.52 -0.34 16 12 C -0.02 -0.60 5.44 -80.23 -0.44 -1.03 16 13 N -0.40 -9.97 9.67 -7.86 -0.08 -10.05 16 14 C -0.13 -3.04 11.17 -17.23 -0.19 -3.23 16 15 C 0.09 2.22 11.17 -17.39 -0.19 2.03 16 16 N -0.46 -12.51 8.12 -9.55 -0.08 -12.58 16 17 C 0.24 6.29 6.43 -82.64 -0.53 5.76 16 18 C -0.38 -9.47 7.36 -37.92 -0.28 -9.75 16 19 H 0.09 2.13 6.07 -52.49 -0.32 1.81 16 20 C 0.07 1.56 5.50 -17.31 -0.10 1.46 16 21 N -0.70 -17.58 11.54 55.56 0.64 -16.93 16 22 Si 0.90 17.29 29.56 -169.99 -5.03 12.27 16 23 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 24 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 25 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 26 H 0.05 0.80 8.03 -51.93 -0.42 0.38 16 27 H 0.04 0.48 8.11 -51.93 -0.42 0.06 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.10 1.38 8.01 -51.93 -0.42 0.96 16 30 H 0.10 1.28 6.70 -51.93 -0.35 0.93 16 31 H 0.13 1.86 5.85 -52.49 -0.31 1.55 16 32 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 33 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.12 2.53 8.06 -52.49 -0.42 2.11 16 35 H 0.13 2.60 8.06 -52.49 -0.42 2.18 16 36 H 0.28 6.28 8.29 -40.82 -0.34 5.94 16 LS Contribution 326.83 15.07 4.93 4.93 Total: -1.00 -30.46 326.83 -7.54 -38.00 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -3.48 Total: 5.09 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -2.09 Total: -5.36 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.49 Total: -39.56 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: -0.94 Total: -12.71 kcal Atomic # 14 Polarization: 17.29 SS G_CDS: -5.03 Total: 12.27 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -1.42 Total: -2.65 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.46 -7.54 -38.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244433815.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.050 kcal (2) G-P(sol) polarization free energy of solvation -30.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds