Wall clock time and date at job start Tue Mar 31 2020 12:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42909 * 113.99551 * 2 1 4 4 O 1.42903 * 109.47027 * 75.00100 * 3 2 1 5 5 C 1.35727 * 117.00069 * 74.99967 * 4 3 2 6 6 C 1.38574 * 120.14404 * 359.97324 * 5 4 3 7 7 C 1.38187 * 120.12876 * 179.97438 * 6 5 4 8 8 C 1.38508 * 120.41099 * 0.02562 * 7 6 5 9 9 C 1.37964 * 120.28266 * 359.78255 * 8 7 6 10 10 Cl 1.73598 * 120.06844 * 180.23703 * 9 8 7 11 11 C 1.39873 * 119.86398 * 0.44762 * 9 8 7 12 12 C 1.47560 * 120.19930 * 179.81022 * 11 9 8 13 13 N 1.33051 * 120.55078 * 302.32483 * 12 11 9 14 14 C 1.31910 * 120.02952 * 180.02562 * 13 12 11 15 15 C 1.39028 * 121.22426 * 359.97438 * 14 13 12 16 16 N 1.31520 * 121.14527 * 0.02562 * 15 14 13 17 17 C 1.34094 * 119.86369 * 359.97438 * 16 15 14 18 18 C 1.40718 * 120.57975 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99618 * 172.19988 * 18 17 16 20 20 C 1.40160 * 120.00199 * 352.20424 * 18 17 16 21 21 N 1.30698 * 119.99724 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99841 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47242 * 89.99665 * 22 20 18 24 24 H 1.48502 * 109.46815 * 209.99609 * 22 20 18 25 25 H 1.48500 * 109.47281 * 329.99526 * 22 20 18 26 26 H 1.08997 * 109.47280 * 299.99796 * 1 2 3 27 27 H 1.09001 * 109.47606 * 60.00251 * 1 2 3 28 28 H 1.09005 * 109.46783 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47092 * 314.99825 * 3 2 1 30 30 H 1.08994 * 109.46713 * 194.99737 * 3 2 1 31 31 H 1.08000 * 119.93113 * 0.02798 * 6 5 4 32 32 H 1.07991 * 119.79536 * 180.02562 * 7 6 5 33 33 H 1.07997 * 119.85845 * 180.02562 * 8 7 6 34 34 H 1.07997 * 119.39166 * 180.02562 * 14 13 12 35 35 H 1.07997 * 119.42752 * 180.28581 * 15 14 13 36 36 H 0.97000 * 119.99772 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 8 1.8853 1.8825 1.3014 5 6 2.7176 1.4139 2.2657 6 6 3.6359 0.4193 1.9692 7 6 4.4835 -0.0573 2.9510 8 6 4.4231 0.4527 4.2374 9 6 3.5181 1.4459 4.5503 10 17 3.4515 2.0853 6.1629 11 6 2.6513 1.9334 3.5667 12 6 1.6776 2.9926 3.8943 13 7 0.7831 2.8130 4.8628 14 6 -0.0829 3.7666 5.1468 15 6 -0.0837 4.9700 4.4506 16 7 0.7793 5.1977 3.4847 17 6 1.6798 4.2591 3.1588 18 6 2.6105 4.4870 2.1283 19 1 3.4096 3.7811 1.9566 20 6 2.5004 5.6300 1.3247 21 7 1.5330 6.4840 1.5322 22 14 3.7363 5.9328 -0.0429 23 1 3.2489 5.3068 -1.2981 24 1 3.8981 7.3945 -0.2491 25 1 5.0445 5.3379 0.3314 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.4941 1.9330 -0.7267 30 1 3.0647 1.2338 -0.2659 31 1 3.6897 0.0165 0.9685 32 1 5.1973 -0.8321 2.7139 33 1 5.0901 0.0740 4.9977 34 1 -0.8042 3.6100 5.9351 35 1 -0.8029 5.7328 4.7103 36 1 1.4566 7.2749 0.9758 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244433815.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:12 Heat of formation + Delta-G solvation = -40.640240 kcal Electronic energy + Delta-G solvation = -25058.119602 eV Core-core repulsion = 21339.910081 eV Total energy + Delta-G solvation = -3718.209522 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.071 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.35521 -40.25932 -39.02246 -37.58136 -36.84615 -35.92440 -34.19549 -32.93948 -30.92745 -30.34351 -28.62025 -27.87528 -26.18554 -25.05651 -23.77524 -22.79451 -22.33191 -19.50064 -19.33481 -18.02105 -17.94474 -17.55749 -17.25903 -16.72055 -16.54410 -16.03467 -15.82216 -15.38953 -15.27728 -14.90795 -14.49960 -14.41346 -14.26601 -13.71156 -13.62385 -13.23060 -12.98733 -12.76525 -12.72177 -12.59897 -12.34567 -12.01269 -11.93689 -11.84704 -11.68784 -11.54264 -11.41191 -11.13970 -10.95971 -9.92158 -9.40837 -9.26674 -8.93344 -8.35628 -6.56077 0.12904 0.42766 0.76052 1.24704 1.29171 1.37090 1.51625 1.54897 2.15943 2.46358 2.65413 2.79209 2.88572 3.68099 3.82525 4.00793 4.10211 4.17677 4.24543 4.29100 4.39564 4.44384 4.51311 4.52151 4.54160 4.67782 4.78685 4.81230 5.03114 5.13101 5.21731 5.40938 5.43497 5.45479 5.72363 5.85492 5.89377 6.14202 6.49891 6.60148 6.80096 7.42391 7.98455 8.28270 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.008829 B = 0.007776 C = 0.005868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3170.738812 B = 3599.920307 C = 4770.290239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.403 6.403 3 C 0.200 3.800 4 O -0.323 6.323 5 C 0.144 3.856 6 C -0.197 4.197 7 C -0.068 4.068 8 C -0.152 4.152 9 C -0.009 4.009 10 Cl -0.074 7.074 11 C -0.042 4.042 12 C -0.020 4.020 13 N -0.418 5.418 14 C -0.140 4.140 15 C 0.077 3.923 16 N -0.498 5.498 17 C 0.203 3.797 18 C -0.387 4.387 19 H 0.090 0.910 20 C 0.023 3.977 21 N -0.740 5.740 22 Si 0.977 3.023 23 H -0.248 1.248 24 H -0.268 1.268 25 H -0.252 1.252 26 H 0.020 0.980 27 H 0.060 0.940 28 H 0.106 0.894 29 H 0.112 0.888 30 H 0.124 0.876 31 H 0.158 0.842 32 H 0.175 0.825 33 H 0.155 0.845 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.313 -9.932 -5.829 12.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.323 6.323 3 C 0.087 3.913 4 O -0.238 6.238 5 C 0.097 3.903 6 C -0.215 4.215 7 C -0.086 4.086 8 C -0.170 4.170 9 C -0.036 4.036 10 Cl -0.045 7.045 11 C -0.045 4.045 12 C -0.171 4.171 13 N -0.130 5.130 14 C -0.299 4.299 15 C -0.092 4.092 16 N -0.215 5.215 17 C 0.077 3.923 18 C -0.417 4.417 19 H 0.108 0.892 20 C -0.201 4.201 21 N -0.361 5.361 22 Si 0.796 3.204 23 H -0.172 1.172 24 H -0.192 1.192 25 H -0.175 1.175 26 H 0.039 0.961 27 H 0.079 0.921 28 H 0.124 0.876 29 H 0.130 0.870 30 H 0.142 0.858 31 H 0.176 0.824 32 H 0.192 0.808 33 H 0.173 0.827 34 H 0.166 0.834 35 H 0.167 0.833 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.077 -9.620 -5.722 12.291 hybrid contribution -0.403 0.863 0.044 0.954 sum 4.674 -8.757 -5.678 11.435 Atomic orbital electron populations 1.22873 0.79814 1.03819 1.00136 1.87963 1.21641 1.28982 1.93693 1.24552 1.01092 0.83152 0.82471 1.86470 1.56954 1.59948 1.20404 1.19018 0.90742 0.92962 0.87560 1.21530 0.98178 0.99204 1.02611 1.21275 0.97868 0.98902 0.90568 1.21130 0.99704 0.97135 0.99078 1.21013 0.98620 0.98440 0.85577 1.98321 1.97930 1.86513 1.21784 1.17637 0.97758 0.97756 0.91323 1.21168 1.00611 0.94888 1.00394 1.67816 1.01752 1.31044 1.12342 1.22729 1.05145 0.94159 1.07826 1.23751 0.96575 0.96540 0.92321 1.69488 1.06200 1.30651 1.15199 1.20697 0.91693 0.87386 0.92506 1.19670 1.08447 1.04707 1.08911 0.89203 1.27129 0.97747 0.94423 1.00775 1.70145 1.26326 1.07456 1.32142 0.85267 0.78637 0.78878 0.77630 1.17166 1.19219 1.17514 0.96126 0.92124 0.87563 0.87008 0.85808 0.82440 0.80789 0.82706 0.83450 0.83295 0.90318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 10.89 113.37 1.23 1.98 16 2 O -0.40 -11.17 10.19 -126.21 -1.29 -12.46 16 3 C 0.20 5.71 6.39 113.37 0.72 6.44 16 4 O -0.32 -12.91 7.91 -67.73 -0.54 -13.45 16 5 C 0.14 5.65 5.37 22.84 0.12 5.77 16 6 C -0.20 -5.85 8.77 22.34 0.20 -5.65 16 7 C -0.07 -1.73 10.03 22.32 0.22 -1.51 16 8 C -0.15 -4.55 9.81 22.27 0.22 -4.34 16 9 C -0.01 -0.35 6.35 22.60 0.14 -0.20 16 10 Cl -0.07 -2.98 27.44 -2.72 -0.07 -3.06 16 11 C -0.04 -1.89 4.96 -19.93 -0.10 -1.99 16 12 C -0.02 -1.04 5.44 43.56 0.24 -0.81 16 13 N -0.42 -21.69 9.67 -178.79 -1.73 -23.42 16 14 C -0.14 -6.84 11.17 84.87 0.95 -5.89 16 15 C 0.08 3.85 11.17 84.93 0.95 4.79 16 16 N -0.50 -28.13 8.12 -184.14 -1.50 -29.63 16 17 C 0.20 11.25 6.43 41.55 0.27 11.52 16 18 C -0.39 -20.01 7.36 23.34 0.17 -19.84 16 19 H 0.09 4.44 6.07 -2.91 -0.02 4.42 16 20 C 0.02 1.12 5.50 85.33 0.47 1.59 16 21 N -0.74 -38.00 11.54 21.86 0.25 -37.74 16 22 Si 0.98 34.84 29.56 68.60 2.03 36.87 16 23 H -0.25 -8.06 7.11 99.48 0.71 -7.36 16 24 H -0.27 -9.26 7.11 99.48 0.71 -8.55 16 25 H -0.25 -8.69 7.11 99.48 0.71 -7.98 16 26 H 0.02 0.63 8.03 -2.39 -0.02 0.61 16 27 H 0.06 1.28 8.11 -2.39 -0.02 1.26 16 28 H 0.11 2.13 8.14 -2.38 -0.02 2.11 16 29 H 0.11 2.87 8.01 -2.39 -0.02 2.85 16 30 H 0.12 2.82 6.70 -2.39 -0.02 2.81 16 31 H 0.16 3.77 5.85 -2.91 -0.02 3.76 16 32 H 0.17 2.78 8.06 -2.92 -0.02 2.75 16 33 H 0.16 3.68 8.06 -2.91 -0.02 3.65 16 34 H 0.15 6.19 8.06 -2.91 -0.02 6.17 16 35 H 0.15 6.42 8.06 -2.91 -0.02 6.39 16 36 H 0.29 13.13 8.29 -92.71 -0.77 12.36 16 Total: -1.00 -69.84 326.83 4.10 -65.75 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: 1.13 Total: 25.26 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: 5.81 Total: -8.13 kcal Atomic # 7 Polarization: -87.82 SS G_CDS: -2.97 Total: -90.79 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -1.82 Total: -25.91 kcal Atomic # 14 Polarization: 34.84 SS G_CDS: 2.03 Total: 36.87 kcal Atomic # 17 Polarization: -2.98 SS G_CDS: -0.07 Total: -3.06 kcal Total: -69.84 4.10 -65.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244433815.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.106 kcal (2) G-P(sol) polarization free energy of solvation -69.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds