Wall clock time and date at job start Tue Mar 31 2020 12:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35780 * 117.00003 * 2 1 4 4 C 1.38768 * 119.86465 * 359.97270 * 3 2 1 5 5 C 1.38341 * 120.05424 * 179.76512 * 4 3 2 6 6 O 1.35739 * 120.10848 * 180.27629 * 5 4 3 7 7 C 1.42903 * 117.00073 * 0.25599 * 6 5 4 8 8 C 1.40413 * 119.78388 * 0.53546 * 5 4 3 9 9 C 1.47430 * 120.13385 * 179.74668 * 8 5 4 10 10 N 1.33110 * 120.55381 * 307.75073 * 9 8 5 11 11 C 1.31897 * 120.02159 * 180.02562 * 10 9 8 12 12 C 1.39026 * 121.23435 * 359.97438 * 11 10 9 13 13 N 1.31519 * 121.16048 * 0.02562 * 12 11 10 14 14 C 1.34095 * 119.86279 * 0.02562 * 13 12 11 15 15 C 1.40669 * 120.58333 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99996 * 184.51379 * 15 14 13 17 17 C 1.40137 * 119.99970 * 4.51907 * 15 14 13 18 18 N 1.30712 * 119.99937 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00002 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.46826 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47214 * 119.99753 * 19 17 15 22 22 H 1.48504 * 109.46884 * 239.99960 * 19 17 15 23 23 C 1.39850 * 119.73098 * 359.46435 * 8 5 4 24 24 C 1.37713 * 119.94583 * 0.25663 * 23 8 5 25 25 Cl 1.73601 * 119.89168 * 179.97438 * 24 23 8 26 26 H 1.08993 * 109.47453 * 300.00636 * 1 2 3 27 27 H 1.09005 * 109.47229 * 60.00331 * 1 2 3 28 28 H 1.09000 * 109.47202 * 179.97438 * 1 2 3 29 29 H 1.08003 * 119.97546 * 0.02562 * 4 3 2 30 30 H 1.08991 * 109.47356 * 300.00090 * 7 6 5 31 31 H 1.09000 * 109.47072 * 60.00338 * 7 6 5 32 32 H 1.08998 * 109.46943 * 179.97438 * 7 6 5 33 33 H 1.08002 * 119.37600 * 179.97438 * 11 10 9 34 34 H 1.08006 * 119.41904 * 179.72293 * 12 11 10 35 35 H 0.97001 * 119.99896 * 180.02562 * 18 17 15 36 36 H 1.08007 * 120.02603 * 180.23484 * 23 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 1.2869 2.3718 -0.0006 5 6 1.9108 3.6065 0.0043 6 8 1.1699 4.7439 0.0094 7 6 -0.2511 4.5925 0.0151 8 6 3.3131 3.6794 -0.0015 9 6 3.9860 4.9912 -0.0020 10 7 3.6666 5.9152 -0.9053 11 6 4.2757 7.0851 -0.8964 12 6 5.2549 7.3809 0.0452 13 7 5.6075 6.5032 0.9591 14 6 5.0181 5.2992 0.9910 15 6 5.3831 4.3492 1.9622 16 1 4.9559 3.3577 1.9350 17 6 6.3010 4.6895 2.9650 18 7 6.8183 5.8894 2.9976 19 14 6.7851 3.4282 4.2551 20 1 6.0635 2.1559 3.9987 21 1 8.2492 3.1894 4.1890 22 1 6.4269 3.9369 5.6035 23 6 4.0687 2.5026 -0.0009 24 6 3.4361 1.2794 0.0001 25 17 4.3755 -0.1805 0.0002 26 1 -0.3634 0.5139 0.8898 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2085 2.3123 -0.0006 30 1 -0.5617 4.0446 -0.8744 31 1 -0.5542 4.0415 0.9054 32 1 -0.7212 5.5759 0.0193 33 1 4.0087 7.8270 -1.6344 34 1 5.7380 8.3466 0.0227 35 1 7.4540 6.1248 3.6915 36 1 5.1476 2.5532 -0.0015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245724965.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:40 Heat of formation + Delta-G solvation = -30.719664 kcal Electronic energy + Delta-G solvation = -24442.222980 eV Core-core repulsion = 20724.443647 eV Total energy + Delta-G solvation = -3717.779333 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.071 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.60772 -40.40413 -39.73727 -37.94822 -36.96068 -35.97152 -34.03575 -32.77456 -31.15921 -30.28503 -28.85346 -28.03347 -27.30897 -24.73992 -23.84315 -23.06786 -22.34809 -19.80209 -19.49544 -18.17561 -17.75711 -17.67156 -17.10059 -16.92765 -16.63244 -16.33113 -15.92953 -15.60783 -15.43462 -15.15135 -14.63394 -14.35795 -14.07118 -14.03185 -13.33283 -13.29351 -13.10010 -12.96255 -12.75706 -12.51984 -12.36770 -12.25658 -12.20845 -11.96998 -11.73619 -11.69667 -11.43891 -11.26553 -10.94563 -9.87717 -9.53555 -9.30679 -8.71133 -8.37369 -6.61653 0.07069 0.23610 0.70764 1.18715 1.29099 1.38357 1.52921 1.54617 2.16041 2.23292 2.42023 2.57382 2.77437 3.66274 3.69957 3.83057 3.94963 4.16553 4.24415 4.32329 4.38488 4.42776 4.43129 4.48410 4.54587 4.62852 4.67982 4.76281 4.84760 4.90501 5.08765 5.11100 5.23870 5.31381 5.59278 5.84705 6.12257 6.19184 6.45035 6.54816 6.74489 7.40472 7.95337 8.24525 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.010580 B = 0.006137 C = 0.004487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.818313 B = 4561.731426 C = 6238.462397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.314 6.314 3 C 0.171 3.829 4 C -0.279 4.279 5 C 0.177 3.823 6 O -0.319 6.319 7 C 0.014 3.986 8 C -0.063 4.063 9 C -0.023 4.023 10 N -0.415 5.415 11 C -0.133 4.133 12 C 0.077 3.923 13 N -0.496 5.496 14 C 0.191 3.809 15 C -0.415 4.415 16 H 0.103 0.897 17 C 0.024 3.976 18 N -0.736 5.736 19 Si 0.978 3.022 20 H -0.249 1.249 21 H -0.259 1.259 22 H -0.262 1.262 23 C -0.027 4.027 24 C -0.113 4.113 25 Cl -0.062 7.062 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.126 0.874 29 H 0.176 0.824 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.111 0.889 33 H 0.153 0.847 34 H 0.154 0.846 35 H 0.287 0.713 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.902 -9.512 -1.743 15.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.227 6.227 3 C 0.123 3.877 4 C -0.299 4.299 5 C 0.129 3.871 6 O -0.231 6.231 7 C -0.080 4.080 8 C -0.066 4.066 9 C -0.173 4.173 10 N -0.127 5.127 11 C -0.292 4.292 12 C -0.092 4.092 13 N -0.213 5.213 14 C 0.066 3.934 15 C -0.445 4.445 16 H 0.121 0.879 17 C -0.200 4.200 18 N -0.356 5.356 19 Si 0.796 3.204 20 H -0.172 1.172 21 H -0.184 1.184 22 H -0.186 1.186 23 C -0.047 4.047 24 C -0.141 4.141 25 Cl -0.033 7.033 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.144 0.856 29 H 0.193 0.807 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.130 0.870 33 H 0.171 0.829 34 H 0.171 0.829 35 H 0.098 0.902 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.530 -9.395 -1.642 14.964 hybrid contribution 0.235 0.135 0.387 0.472 sum -11.295 -9.260 -1.255 14.660 Atomic orbital electron populations 1.23473 0.75953 1.06097 1.02575 1.86110 1.23838 1.24954 1.87817 1.18361 0.89644 0.85192 0.94495 1.21218 1.01725 0.89585 1.17328 1.18987 0.89977 0.85622 0.92511 1.86236 1.20727 1.28857 1.87288 1.23413 0.76787 1.05314 1.02528 1.17505 0.89804 0.91193 1.08094 1.21204 1.02190 0.94583 0.99310 1.67849 1.22589 1.01247 1.20998 1.22842 1.04038 0.96681 1.05631 1.23834 0.94590 0.99335 0.91398 1.69522 1.27277 1.02346 1.22171 1.20814 0.89207 0.91324 0.92105 1.20067 1.18936 0.99025 1.06475 0.87936 1.27104 0.94577 0.97929 1.00429 1.70151 1.17476 1.19952 1.28065 0.85200 0.79394 0.78719 0.77049 1.17212 1.18374 1.18614 1.20705 1.00139 0.88551 0.95303 1.19802 0.89189 0.87891 1.17189 1.98308 1.72375 1.35112 1.97510 0.91429 0.91309 0.85609 0.80722 0.90910 0.91204 0.87049 0.82933 0.82895 0.90155 0.84735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.81 113.37 1.11 1.30 16 2 O -0.31 -8.11 9.93 -91.09 -0.90 -9.02 16 3 C 0.17 5.32 6.69 22.64 0.15 5.47 16 4 C -0.28 -8.27 8.01 22.42 0.18 -8.09 16 5 C 0.18 6.77 6.68 22.82 0.15 6.92 16 6 O -0.32 -11.91 9.60 -90.63 -0.87 -12.78 16 7 C 0.01 0.31 9.81 113.37 1.11 1.42 16 8 C -0.06 -2.84 5.21 -19.94 -0.10 -2.94 16 9 C -0.02 -1.20 6.13 43.53 0.27 -0.93 16 10 N -0.42 -21.14 10.00 -178.84 -1.79 -22.93 16 11 C -0.13 -6.29 11.17 84.87 0.95 -5.34 16 12 C 0.08 3.75 11.17 84.93 0.95 4.70 16 13 N -0.50 -27.74 8.08 -184.13 -1.49 -29.23 16 14 C 0.19 10.62 6.68 41.55 0.28 10.90 16 15 C -0.41 -21.76 8.24 23.33 0.19 -21.57 16 16 H 0.10 5.08 5.41 -2.91 -0.02 5.06 16 17 C 0.02 1.19 5.50 85.32 0.47 1.66 16 18 N -0.74 -38.18 11.51 21.86 0.25 -37.92 16 19 Si 0.98 36.70 29.56 68.60 2.03 38.73 16 20 H -0.25 -9.13 7.11 99.48 0.71 -8.42 16 21 H -0.26 -9.29 7.11 99.48 0.71 -8.59 16 22 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 23 C -0.03 -1.11 7.43 22.54 0.17 -0.94 16 24 C -0.11 -4.04 6.33 22.39 0.14 -3.90 16 25 Cl -0.06 -1.99 28.48 -2.72 -0.08 -2.07 16 26 H 0.07 0.86 7.65 -2.39 -0.02 0.85 16 27 H 0.07 0.85 7.65 -2.38 -0.02 0.84 16 28 H 0.13 1.21 8.14 -2.39 -0.02 1.20 16 29 H 0.18 3.62 4.50 -2.91 -0.01 3.61 16 30 H 0.07 1.32 7.65 -2.39 -0.02 1.30 16 31 H 0.07 1.30 7.67 -2.39 -0.02 1.28 16 32 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.15 6.09 8.06 -2.91 -0.02 6.06 16 34 H 0.15 6.35 8.06 -2.91 -0.02 6.33 16 35 H 0.29 13.28 8.29 -92.71 -0.77 12.51 16 36 H 0.13 5.77 7.44 -2.91 -0.02 5.75 16 Total: -1.00 -69.67 326.00 4.31 -65.36 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: 1.14 Total: 21.21 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: 6.02 Total: -11.34 kcal Atomic # 7 Polarization: -87.06 SS G_CDS: -3.03 Total: -90.09 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -1.77 Total: -21.80 kcal Atomic # 14 Polarization: 36.70 SS G_CDS: 2.03 Total: 38.73 kcal Atomic # 17 Polarization: -1.99 SS G_CDS: -0.08 Total: -2.07 kcal Total: -69.67 4.31 -65.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245724965.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.638 kcal (2) G-P(sol) polarization free energy of solvation -69.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds