Wall clock time and date at job start Tue Mar 31 2020 12:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35704 * 117.00034 * 2 1 4 4 C 1.38511 * 119.56320 * 180.02562 * 3 2 1 5 5 C 1.39908 * 119.07733 * 179.97438 * 4 3 2 6 6 C 1.48026 * 120.87473 * 180.02562 * 5 4 3 7 7 C 1.40227 * 120.34099 * 129.72815 * 6 5 4 8 8 C 1.36731 * 118.60249 * 179.73501 * 7 6 5 9 9 C 1.40854 * 119.24607 * 0.51826 * 8 7 6 10 10 C 1.41023 * 119.67982 * 179.72336 * 9 8 7 11 11 H 1.07996 * 120.00609 * 0.02562 * 10 9 8 12 12 C 1.40137 * 119.99522 * 180.02562 * 10 9 8 13 13 N 1.30684 * 120.00520 * 359.97438 * 12 10 9 14 14 Si 1.86808 * 119.99680 * 179.97438 * 12 10 9 15 15 H 1.48491 * 109.47208 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.46897 * 120.00168 * 14 12 10 17 17 H 1.48505 * 109.47048 * 239.99611 * 14 12 10 18 18 N 1.33764 * 120.63227 * 359.74481 * 9 8 7 19 19 C 1.31200 * 121.51017 * 359.97438 * 18 9 8 20 20 C 1.39991 * 118.25367 * 0.02562 * 5 4 3 21 21 Cl 1.73606 * 120.48080 * 180.02562 * 20 5 4 22 22 C 1.38647 * 119.04163 * 0.02562 * 20 5 4 23 23 O 1.35711 * 119.58468 * 180.27829 * 22 20 5 24 24 C 1.42902 * 116.99527 * 179.72474 * 23 22 20 25 25 N 1.32364 * 120.82371 * 359.97438 * 22 20 5 26 26 H 1.09002 * 109.47129 * 299.99647 * 1 2 3 27 27 H 1.08997 * 109.47632 * 59.99400 * 1 2 3 28 28 H 1.08998 * 109.47219 * 179.97438 * 1 2 3 29 29 H 1.07990 * 120.46149 * 0.02562 * 4 3 2 30 30 H 1.07999 * 120.69965 * 359.97438 * 7 6 5 31 31 H 1.07995 * 120.37846 * 180.24124 * 8 7 6 32 32 H 0.96994 * 120.00964 * 179.97438 * 13 12 10 33 33 H 1.08001 * 119.65739 * 179.97438 * 19 18 9 34 34 H 1.08999 * 109.47154 * 59.99945 * 24 23 22 35 35 H 1.09001 * 109.46600 * 179.97438 * 24 23 22 36 36 H 1.08995 * 109.47235 * 299.99473 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 3.4288 1.2711 -0.0005 5 6 4.0534 2.5230 -0.0011 6 6 5.5294 2.6355 -0.0022 7 6 6.1762 3.4606 -0.9335 8 6 7.5406 3.5423 -0.8991 9 6 8.2511 2.7914 0.0576 10 6 9.6589 2.8643 0.0974 11 1 10.1871 3.4940 -0.6032 12 6 10.3724 2.1196 1.0461 13 7 9.7333 1.3579 1.8942 14 14 12.2373 2.2155 1.0984 15 1 12.7151 3.1420 0.0409 16 1 12.6700 2.7168 2.4276 17 1 12.8091 0.8644 0.8689 18 7 7.6033 2.0095 0.9283 19 6 6.2947 1.9149 0.9233 20 6 3.2458 3.6665 -0.0005 21 17 3.9599 5.2489 -0.0018 22 6 1.8674 3.5170 0.0011 23 8 1.0741 4.6180 -0.0040 24 6 -0.3382 4.3999 -0.0082 25 7 1.3157 2.3138 0.0016 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 4.0174 0.3656 -0.0014 30 1 5.6083 4.0227 -1.6601 31 1 8.0678 4.1720 -1.6004 32 1 10.2271 0.8422 2.5507 33 1 5.8025 1.2741 1.6398 34 1 -0.6218 3.8387 0.8822 35 1 -0.8541 5.3601 -0.0116 36 1 -0.6159 3.8346 -0.8977 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245750025.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:31 Heat of formation + Delta-G solvation = -28.135826 kcal Electronic energy + Delta-G solvation = -23604.881662 eV Core-core repulsion = 19887.214373 eV Total energy + Delta-G solvation = -3717.667289 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.071 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.98595 -40.14508 -39.95346 -38.23645 -37.25131 -35.74960 -34.07616 -32.52706 -31.37747 -31.18080 -28.89047 -27.54288 -27.43455 -24.56971 -24.26107 -23.48461 -22.25386 -19.64463 -19.50433 -18.96460 -17.59511 -17.50061 -17.45196 -17.08189 -16.53797 -16.20748 -16.06224 -15.91804 -15.52514 -14.89898 -14.45468 -14.35063 -14.08152 -13.89139 -13.80274 -13.07576 -13.05021 -12.88853 -12.80597 -12.73301 -12.60317 -12.39114 -12.32500 -12.00019 -11.76239 -11.57099 -11.30713 -11.01173 -10.77736 -10.13530 -9.56399 -9.39261 -9.15226 -8.37365 -6.57252 -0.15936 0.03172 0.89323 1.20379 1.23162 1.42432 1.52912 1.58046 1.84378 2.12494 2.20657 2.51450 2.81348 3.11312 3.80167 3.86940 3.99381 4.12588 4.16867 4.37217 4.42031 4.42901 4.44715 4.45366 4.59254 4.72300 4.75773 4.81649 4.88319 5.00507 5.13301 5.18700 5.45817 5.63895 5.75093 5.82034 6.07075 6.20264 6.24512 6.53432 6.63395 6.88192 8.11020 8.35226 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.020749 B = 0.003442 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.123229 B = 8133.346574 C = 9182.723564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.309 6.309 3 C 0.365 3.635 4 C -0.229 4.229 5 C 0.123 3.877 6 C -0.277 4.277 7 C -0.012 4.012 8 C -0.285 4.285 9 C 0.227 3.773 10 C -0.443 4.443 11 H 0.096 0.904 12 C 0.022 3.978 13 N -0.739 5.739 14 Si 0.990 3.010 15 H -0.252 1.252 16 H -0.266 1.266 17 H -0.265 1.265 18 N -0.520 5.520 19 C 0.153 3.847 20 C -0.169 4.169 21 Cl -0.049 7.049 22 C 0.372 3.628 23 O -0.305 6.305 24 C 0.035 3.965 25 N -0.589 5.589 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.126 0.874 29 H 0.150 0.850 30 H 0.117 0.883 31 H 0.114 0.886 32 H 0.284 0.716 33 H 0.135 0.865 34 H 0.061 0.939 35 H 0.125 0.875 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.897 0.544 -2.550 16.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.215 6.215 3 C 0.188 3.812 4 C -0.250 4.250 5 C 0.115 3.885 6 C -0.283 4.283 7 C -0.036 4.036 8 C -0.308 4.308 9 C 0.104 3.896 10 C -0.472 4.472 11 H 0.114 0.886 12 C -0.202 4.202 13 N -0.360 5.360 14 Si 0.810 3.190 15 H -0.175 1.175 16 H -0.191 1.191 17 H -0.189 1.189 18 N -0.233 5.233 19 C -0.015 4.015 20 C -0.199 4.199 21 Cl -0.021 7.021 22 C 0.193 3.807 23 O -0.211 6.211 24 C -0.060 4.060 25 N -0.330 5.330 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.144 0.856 29 H 0.168 0.832 30 H 0.135 0.865 31 H 0.132 0.868 32 H 0.095 0.905 33 H 0.152 0.848 34 H 0.080 0.920 35 H 0.143 0.857 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.022 0.026 -1.788 16.121 hybrid contribution 0.631 0.636 -0.480 1.016 sum -15.391 0.662 -2.268 15.571 Atomic orbital electron populations 1.23154 0.75332 1.05016 1.02547 1.86300 1.24848 1.23147 1.87230 1.19262 0.88685 0.83846 0.89420 1.21053 0.91708 0.98419 1.13836 1.18529 0.92589 0.89784 0.87566 1.18828 0.89867 1.12246 1.07326 1.20748 0.93766 0.93597 0.95477 1.21554 0.94682 1.08867 1.05666 1.19074 0.94665 0.88067 0.87812 1.20201 0.90890 1.22084 1.14058 0.88614 1.27105 1.06203 0.93229 0.93684 1.70183 1.39539 1.15546 1.10723 0.85037 0.75002 0.79463 0.79537 1.17506 1.19086 1.18938 1.68763 1.07404 1.21749 1.25352 1.22944 0.90576 0.93592 0.94352 1.20834 0.90121 0.88473 1.20453 1.98323 1.83533 1.22856 1.97353 1.18801 0.86729 0.84895 0.90283 1.86349 1.21052 1.26669 1.87072 1.23163 0.75516 1.04665 1.02623 1.66854 1.40149 0.97479 1.28526 0.92130 0.92084 0.85639 0.83176 0.86501 0.86843 0.90528 0.84793 0.92044 0.85670 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.38 113.37 1.18 1.76 16 2 O -0.31 -8.05 10.47 -90.24 -0.95 -8.99 16 3 C 0.36 11.12 7.48 84.68 0.63 11.75 16 4 C -0.23 -7.77 9.59 22.74 0.22 -7.55 16 5 C 0.12 4.66 5.51 -19.85 -0.11 4.55 16 6 C -0.28 -12.06 5.20 -19.76 -0.10 -12.16 16 7 C -0.01 -0.55 8.34 22.40 0.19 -0.36 16 8 C -0.29 -13.73 9.77 22.56 0.22 -13.51 16 9 C 0.23 12.23 6.55 40.17 0.26 12.49 16 10 C -0.44 -23.08 9.12 23.41 0.21 -22.87 16 11 H 0.10 4.62 7.85 -2.91 -0.02 4.60 16 12 C 0.02 1.06 5.50 85.32 0.47 1.52 16 13 N -0.74 -38.45 11.44 21.86 0.25 -38.20 16 14 Si 0.99 36.32 29.56 68.60 2.03 38.35 16 15 H -0.25 -8.85 7.11 99.48 0.71 -8.14 16 16 H -0.27 -9.46 7.11 99.48 0.71 -8.75 16 17 H -0.26 -9.35 7.11 99.48 0.71 -8.65 16 18 N -0.52 -28.39 7.84 -188.25 -1.48 -29.87 16 19 C 0.15 7.33 10.73 85.23 0.91 8.24 16 20 C -0.17 -6.02 6.34 22.79 0.14 -5.88 16 21 Cl -0.05 -1.75 25.82 -2.72 -0.07 -1.82 16 22 C 0.37 11.78 7.48 84.71 0.63 12.41 16 23 O -0.31 -8.41 9.93 -90.33 -0.90 -9.31 16 24 C 0.03 0.62 10.38 113.37 1.18 1.80 16 25 N -0.59 -17.29 8.03 -422.11 -3.39 -20.68 16 26 H 0.06 1.01 8.10 -2.39 -0.02 0.99 16 27 H 0.06 1.01 8.10 -2.39 -0.02 0.99 16 28 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.15 4.95 8.06 -2.92 -0.02 4.92 16 30 H 0.12 4.65 7.30 -2.91 -0.02 4.63 16 31 H 0.11 5.02 8.06 -2.91 -0.02 4.99 16 32 H 0.28 13.21 8.29 -92.71 -0.77 12.44 16 33 H 0.13 5.85 8.06 -2.91 -0.02 5.82 16 34 H 0.06 1.06 8.10 -2.39 -0.02 1.04 16 35 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.06 1.06 8.10 -2.39 -0.02 1.04 16 Total: -1.00 -62.25 333.08 2.66 -59.59 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 1.12 Total: 18.74 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: 6.04 Total: -7.81 kcal Atomic # 7 Polarization: -84.13 SS G_CDS: -4.61 Total: -88.75 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -1.84 Total: -18.30 kcal Atomic # 14 Polarization: 36.32 SS G_CDS: 2.03 Total: 38.35 kcal Atomic # 17 Polarization: -1.75 SS G_CDS: -0.07 Total: -1.82 kcal Total: -62.25 2.66 -59.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245750025.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.451 kcal (2) G-P(sol) polarization free energy of solvation -62.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds