Wall clock time and date at job start Tue Mar 31 2020 13:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76198 * 102.99767 * 2 1 4 4 C 1.38868 * 120.15161 * 0.20519 * 3 2 1 5 5 C 1.38068 * 120.08598 * 180.27668 * 4 3 2 6 6 C 1.38802 * 120.39498 * 359.77548 * 5 4 3 7 7 F 1.35102 * 119.84575 * 179.97438 * 6 5 4 8 8 C 1.38002 * 120.30439 * 359.97438 * 6 5 4 9 9 C 1.50704 * 120.04740 * 179.97438 * 8 6 5 10 10 C 1.39695 * 119.90261 * 359.97438 * 8 6 5 11 11 C 1.47603 * 120.19070 * 180.02562 * 10 8 6 12 12 C 1.39305 * 120.26108 * 90.00428 * 11 10 8 13 13 C 1.37896 * 120.12023 * 179.97438 * 12 11 10 14 14 C 1.39259 * 120.66950 * 0.02562 * 13 12 11 15 15 F 1.35104 * 119.73449 * 179.97438 * 14 13 12 16 16 C 1.37577 * 120.53512 * 359.97438 * 14 13 12 17 17 C 1.40741 * 119.84990 * 0.02562 * 16 14 13 18 18 C 1.40802 * 120.32213 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00293 * 204.99357 * 18 17 16 20 20 C 1.40004 * 120.00180 * 24.99835 * 18 17 16 21 21 N 1.30820 * 120.00023 * 17.49742 * 20 18 17 22 22 Si 1.86803 * 120.00238 * 197.50503 * 20 18 17 23 23 H 1.48500 * 109.47140 * 59.99358 * 22 20 18 24 24 H 1.48494 * 109.47113 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46930 * 299.99515 * 22 20 18 26 26 H 1.08998 * 109.47486 * 60.00461 * 1 2 3 27 27 H 1.09006 * 109.46422 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47418 * 299.99810 * 1 2 3 29 29 H 1.07996 * 119.95478 * 0.02562 * 4 3 2 30 30 H 1.07997 * 119.80092 * 179.74068 * 5 4 3 31 31 H 1.08993 * 109.46855 * 270.01887 * 9 8 6 32 32 H 1.08996 * 109.47452 * 30.02645 * 9 8 6 33 33 H 1.09007 * 109.46873 * 150.02275 * 9 8 6 34 34 H 1.08001 * 119.94603 * 359.70245 * 12 11 10 35 35 H 1.08002 * 119.66843 * 179.97438 * 13 12 11 36 36 H 1.07993 * 120.07455 * 180.02562 * 16 14 13 37 37 H 0.96998 * 119.99968 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1971 2.6666 0.0043 5 6 1.5092 4.0115 -0.0015 6 6 2.8342 4.4250 -0.0069 7 9 3.1269 5.7439 -0.0131 8 6 3.8538 3.4951 -0.0061 9 6 5.2904 3.9505 -0.0126 10 6 3.5524 2.1311 0.0008 11 6 4.6381 1.1310 0.0024 12 6 5.1576 0.6607 1.2063 13 6 6.1714 -0.2740 1.2043 14 6 6.6885 -0.7586 0.0055 15 9 7.6822 -1.6738 0.0256 16 6 6.1957 -0.3129 -1.1992 17 6 5.1610 0.6409 -1.2230 18 6 4.6496 1.1043 -2.4503 19 1 4.1794 2.0749 -2.5075 20 6 4.7506 0.3069 -3.5966 21 7 4.9946 -0.9734 -3.4834 22 14 4.5370 1.0710 -5.2878 23 1 5.5667 2.1217 -5.4899 24 1 4.6900 0.0221 -6.3278 25 1 3.1850 1.6767 -5.3901 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3632 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 0.1638 2.3527 0.0081 30 1 0.7176 4.7462 -0.0023 31 1 5.6334 4.0561 -1.0417 32 1 5.3695 4.9107 0.4972 33 1 5.9074 3.2139 0.5022 34 1 4.7687 1.0320 2.1430 35 1 6.5691 -0.6333 2.1420 36 1 6.6020 -0.6940 -2.1244 37 1 5.0641 -1.5259 -4.2776 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245759481.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:59 Heat of formation + Delta-G solvation = -60.597140 kcal Electronic energy + Delta-G solvation = -24475.032220 eV Core-core repulsion = 20750.453836 eV Total energy + Delta-G solvation = -3724.578383 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.074 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.49601 -47.67506 -38.96843 -36.99051 -33.83123 -32.69815 -31.00124 -29.81694 -29.03652 -27.95173 -26.35188 -25.46072 -22.66373 -21.43645 -21.30548 -19.96973 -17.65715 -16.98097 -16.67089 -16.21491 -15.93455 -15.29196 -14.94970 -14.65798 -14.51549 -14.43144 -14.32023 -13.50330 -13.44123 -13.10676 -13.00069 -12.85473 -12.67335 -12.59109 -12.15332 -12.08809 -11.70410 -11.60770 -11.50669 -11.19407 -11.11736 -10.80849 -10.68817 -10.46003 -10.04617 -9.75560 -9.58200 -9.30365 -8.96669 -8.21262 -7.66396 -7.34099 -6.92481 -6.73988 -4.56486 1.49081 1.64111 2.01126 2.52343 2.72125 2.96835 2.99093 3.01622 3.11486 3.81392 3.90314 4.40212 4.66157 5.08968 5.15160 5.25573 5.28169 5.38187 5.51870 5.61833 5.63890 5.84117 5.86884 6.12137 6.16425 6.19423 6.31424 6.36651 6.49929 6.56995 6.62499 6.85434 6.88943 6.93149 7.09434 7.25324 7.41023 7.58518 7.68957 7.80241 8.08306 8.40937 8.66375 8.71803 9.98537 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.009415 B = 0.006437 C = 0.005869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2973.235370 B = 4348.525513 C = 4769.812082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 S -0.053 6.053 3 C -0.086 4.086 4 C -0.121 4.121 5 C -0.149 4.149 6 C 0.079 3.921 7 F -0.146 7.146 8 C -0.096 4.096 9 C -0.107 4.107 10 C 0.071 3.929 11 C -0.200 4.200 12 C -0.035 4.035 13 C -0.280 4.280 14 C 0.111 3.889 15 F -0.168 7.168 16 C -0.198 4.198 17 C 0.160 3.840 18 C -0.437 4.437 19 H 0.082 0.918 20 C 0.080 3.920 21 N -0.773 5.773 22 Si 0.904 3.096 23 H -0.261 1.261 24 H -0.276 1.276 25 H -0.263 1.263 26 H 0.078 0.922 27 H 0.101 0.899 28 H 0.075 0.925 29 H 0.125 0.875 30 H 0.127 0.873 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.130 0.870 37 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.489 4.686 3.603 8.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.338 4.338 2 S 0.192 5.808 3 C -0.199 4.199 4 C -0.145 4.145 5 C -0.169 4.169 6 C 0.057 3.943 7 F -0.125 7.125 8 C -0.099 4.099 9 C -0.164 4.164 10 C 0.065 3.935 11 C -0.202 4.202 12 C -0.053 4.053 13 C -0.300 4.300 14 C 0.092 3.908 15 F -0.147 7.147 16 C -0.218 4.218 17 C 0.157 3.843 18 C -0.465 4.465 19 H 0.100 0.900 20 C -0.141 4.141 21 N -0.396 5.396 22 Si 0.728 3.272 23 H -0.185 1.185 24 H -0.201 1.201 25 H -0.187 1.187 26 H 0.097 0.903 27 H 0.120 0.880 28 H 0.094 0.906 29 H 0.142 0.858 30 H 0.145 0.855 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.148 0.852 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.807 3.363 3.452 7.546 hybrid contribution -0.935 1.436 -0.880 1.927 sum -6.742 4.799 2.572 8.666 Atomic orbital electron populations 1.23779 0.98930 1.06368 1.04719 1.86294 1.01288 1.01862 1.91386 1.22124 0.95781 0.97151 1.04824 1.20791 0.98111 0.92028 1.03611 1.20784 0.94459 0.96292 1.05386 1.17385 0.93348 0.77166 1.06351 1.91421 1.94287 1.32503 1.94316 1.20070 0.95672 0.92133 1.02042 1.20657 0.91749 1.00986 1.03000 1.18031 0.90750 0.91072 0.93637 1.18260 1.02107 1.06387 0.93485 1.20237 0.94455 0.95045 0.95578 1.20102 1.06474 1.08260 0.95198 1.17769 0.87746 0.90044 0.95256 1.91337 1.60264 1.65409 1.97668 1.21212 1.00653 1.04503 0.95440 1.17089 0.87878 0.88336 0.91032 1.19432 1.32053 1.02982 0.92006 0.90036 1.25950 0.92288 0.94214 1.01619 1.69799 1.32218 1.05034 1.32518 0.86403 0.80297 0.79984 0.80507 1.18539 1.20081 1.18740 0.90329 0.88008 0.90582 0.85759 0.85507 0.90688 0.92302 0.90199 0.88432 0.88165 0.85227 0.90333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 9.15 101.05 0.92 -1.21 16 2 S -0.05 -0.96 21.56 -107.50 -2.32 -3.28 16 3 C -0.09 -1.60 6.16 -38.51 -0.24 -1.83 16 4 C -0.12 -1.91 9.36 -39.41 -0.37 -2.28 16 5 C -0.15 -2.30 10.01 -39.44 -0.39 -2.69 16 6 C 0.08 1.36 7.23 -39.46 -0.29 1.08 16 7 F -0.15 -2.44 16.45 2.25 0.04 -2.40 16 8 C -0.10 -1.80 5.92 -104.16 -0.62 -2.41 16 9 C -0.11 -1.85 9.44 36.01 0.34 -1.51 16 10 C 0.07 1.42 4.05 -104.69 -0.42 1.00 16 11 C -0.20 -4.38 2.88 -104.25 -0.30 -4.68 16 12 C -0.03 -0.73 9.47 -39.31 -0.37 -1.10 16 13 C -0.28 -6.11 10.00 -39.33 -0.39 -6.51 16 14 C 0.11 2.63 7.28 -39.44 -0.29 2.35 16 15 F -0.17 -3.89 17.26 2.25 0.04 -3.85 16 16 C -0.20 -4.94 8.65 -38.88 -0.34 -5.28 16 17 C 0.16 3.88 5.59 -106.56 -0.60 3.28 16 18 C -0.44 -10.62 8.49 -37.95 -0.32 -10.94 16 19 H 0.08 1.98 7.26 -52.48 -0.38 1.60 16 20 C 0.08 1.89 5.14 -17.32 -0.09 1.80 16 21 N -0.77 -18.76 10.97 55.55 0.61 -18.15 16 22 Si 0.90 17.88 29.59 -169.99 -5.03 12.85 16 23 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 24 H -0.28 -5.32 7.11 56.52 0.40 -4.91 16 25 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 26 H 0.08 0.94 7.76 -51.92 -0.40 0.53 16 27 H 0.10 1.12 8.14 -51.92 -0.42 0.70 16 28 H 0.08 0.83 7.74 -51.92 -0.40 0.43 16 29 H 0.12 1.61 5.88 -52.49 -0.31 1.31 16 30 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 31 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 32 H 0.06 0.89 7.63 -51.93 -0.40 0.49 16 33 H 0.08 1.43 6.85 -51.93 -0.36 1.07 16 34 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 35 H 0.10 1.98 8.06 -52.49 -0.42 1.56 16 36 H 0.13 3.37 6.18 -52.49 -0.32 3.05 16 37 H 0.29 6.36 8.30 -40.82 -0.34 6.02 16 LS Contribution 334.01 15.07 5.03 5.03 Total: -1.00 -25.76 334.01 -9.21 -34.97 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -3.82 Total: 5.78 kcal Atomic # 6 Polarization: -27.19 SS G_CDS: -3.76 Total: -30.95 kcal Atomic # 7 Polarization: -18.76 SS G_CDS: 0.61 Total: -18.15 kcal Atomic # 9 Polarization: -6.32 SS G_CDS: 0.08 Total: -6.25 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Atomic # 16 Polarization: -0.96 SS G_CDS: -2.32 Total: -3.28 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -25.76 -9.21 -34.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245759481.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.631 kcal (2) G-P(sol) polarization free energy of solvation -25.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds