Wall clock time and date at job start Tue Mar 31 2020 13:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 F 1.39892 * 110.65872 * 273.03494 * 3 2 1 5 5 C 1.54626 * 110.73904 * 36.22543 * 3 2 1 6 6 C 1.54003 * 105.04354 * 96.66907 * 5 3 2 7 7 N 1.47488 * 107.08532 * 358.68921 * 6 5 3 8 8 C 1.34770 * 127.03520 * 205.40187 * 7 6 5 9 9 O 1.21555 * 120.00045 * 174.00078 * 8 7 6 10 10 C 1.47868 * 120.00175 * 353.99429 * 8 7 6 11 11 C 1.39672 * 120.09778 * 350.64275 * 10 8 7 12 12 C 1.38041 * 120.03766 * 179.97438 * 11 10 8 13 13 C 1.38184 * 120.24252 * 0.02562 * 12 11 10 14 14 C 1.39178 * 120.19919 * 359.95416 * 13 12 11 15 15 S 1.76201 * 120.01737 * 180.02562 * 14 13 12 16 16 C 1.76202 * 99.99972 * 271.90572 * 15 14 13 17 17 H 1.08000 * 120.00144 * 354.27106 * 16 15 14 18 18 C 1.38727 * 119.99828 * 174.27072 * 16 15 14 19 19 N 1.31625 * 120.00475 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00030 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.46739 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47065 * 120.00039 * 20 18 16 23 23 H 1.48500 * 109.47057 * 239.99985 * 20 18 16 24 24 C 1.38868 * 119.96231 * 359.76881 * 14 13 12 25 25 C 1.48112 * 105.92893 * 25.45148 * 7 6 5 26 26 H 1.08998 * 110.32150 * 215.55958 * 5 3 2 27 27 H 1.08998 * 110.32642 * 337.67352 * 5 3 2 28 28 H 1.08988 * 109.91522 * 118.05736 * 6 5 3 29 29 H 1.09007 * 109.91020 * 239.14372 * 6 5 3 30 30 H 1.08002 * 119.98160 * 0.02562 * 11 10 8 31 31 H 1.07999 * 119.88063 * 179.97438 * 12 11 10 32 32 H 1.08004 * 119.89334 * 179.97438 * 13 12 11 33 33 H 0.97000 * 120.00438 * 180.02562 * 19 18 16 34 34 H 1.07999 * 120.12307 * 180.27269 * 24 14 13 35 35 H 1.09008 * 110.66375 * 202.25966 * 25 7 6 36 36 H 1.09000 * 110.66508 * 79.14915 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 9 3.1016 -0.0684 1.3071 5 6 3.1561 -1.1656 -0.8546 6 6 3.4589 -0.5448 -2.2310 7 7 3.0713 0.8765 -2.1600 8 6 2.7112 1.6720 -3.1865 9 8 2.3102 2.7989 -2.9705 10 6 2.8041 1.1739 -4.5757 11 6 3.4432 -0.0387 -4.8438 12 6 3.5288 -0.5028 -6.1410 13 6 2.9841 0.2287 -7.1792 14 6 2.3446 1.4381 -6.9234 15 16 1.6512 2.3666 -8.2507 16 6 3.0534 3.3256 -8.7186 17 1 3.9600 3.2776 -8.1336 18 6 2.9929 4.1422 -9.8383 19 7 1.8878 4.2012 -10.5510 20 14 4.4792 5.1595 -10.3340 21 1 5.5869 4.9170 -9.3752 22 1 4.9129 4.7695 -11.6997 23 1 4.1194 6.6002 -10.3215 24 6 2.2487 1.9100 -5.6209 25 6 3.1600 1.2510 -0.7297 26 1 4.0680 -1.5646 -0.4102 27 1 2.4063 -1.9512 -0.9485 28 1 4.5232 -0.6289 -2.4502 29 1 2.8799 -1.0522 -3.0026 30 1 3.8701 -0.6141 -4.0355 31 1 4.0239 -1.4406 -6.3454 32 1 3.0546 -0.1395 -8.1921 33 1 1.8456 4.7719 -11.3342 34 1 1.7492 2.8460 -5.4189 35 1 2.5400 2.1230 -0.5212 36 1 4.1954 1.4371 -0.4443 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417377700.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:26 Heat of formation + Delta-G solvation = 1.856181 kcal Electronic energy + Delta-G solvation = -23216.998628 eV Core-core repulsion = 19515.048385 eV Total energy + Delta-G solvation = -3701.950243 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.074 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.62740 -40.65807 -38.46985 -37.59630 -36.54564 -32.53539 -32.37293 -30.96954 -30.72082 -29.37106 -25.68508 -25.60214 -23.50115 -22.75169 -22.12275 -20.17023 -19.24032 -18.21993 -17.34534 -16.78804 -16.48165 -15.94047 -15.68289 -15.35994 -14.87874 -14.74253 -14.69171 -14.35324 -14.25318 -13.87884 -13.64441 -13.42527 -13.30518 -13.21837 -12.94879 -12.89442 -12.39810 -12.20774 -11.86700 -11.59187 -11.23951 -11.22331 -11.13194 -11.10237 -10.69934 -10.09261 -9.90285 -9.20963 -9.20396 -9.05363 -8.67540 -8.07154 -6.75045 -6.31432 -4.05864 1.05520 1.58318 2.02205 2.04034 2.39488 2.81686 2.86208 3.17222 3.18305 3.26756 3.42299 3.54097 3.57214 3.83989 3.99720 4.20132 4.40961 4.48130 4.67802 4.89962 5.00286 5.04500 5.05921 5.11087 5.14890 5.16713 5.24246 5.44294 5.59057 5.70664 5.79873 5.96784 6.16854 6.47174 6.56432 6.84154 6.85302 7.09267 7.15221 7.55093 7.97961 8.30197 9.14537 10.75382 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.023953 B = 0.002857 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.690596 B = 9796.798953 C = 9926.953215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C 0.184 3.816 3 C 0.214 3.786 4 F -0.167 7.167 5 C -0.148 4.148 6 C 0.088 3.912 7 N -0.625 5.625 8 C 0.589 3.411 9 O -0.523 6.523 10 C -0.153 4.153 11 C -0.116 4.116 12 C -0.142 4.142 13 C -0.052 4.052 14 C -0.106 4.106 15 S -0.036 6.036 16 C -0.519 4.519 17 H 0.076 0.924 18 C 0.073 3.927 19 N -0.870 5.870 20 Si 0.921 3.079 21 H -0.270 1.270 22 H -0.279 1.279 23 H -0.278 1.278 24 C -0.018 4.018 25 C 0.098 3.902 26 H 0.116 0.884 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.103 0.897 30 H 0.143 0.857 31 H 0.125 0.875 32 H 0.132 0.868 33 H 0.269 0.731 34 H 0.139 0.861 35 H 0.106 0.894 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.220 -13.855 18.678 24.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.049 5.049 2 C -0.137 4.137 3 C 0.191 3.809 4 F -0.147 7.147 5 C -0.187 4.187 6 C -0.035 4.035 7 N -0.361 5.361 8 C 0.381 3.619 9 O -0.398 6.398 10 C -0.158 4.158 11 C -0.134 4.134 12 C -0.161 4.161 13 C -0.073 4.073 14 C -0.216 4.216 15 S 0.198 5.802 16 C -0.667 4.667 17 H 0.095 0.905 18 C -0.136 4.136 19 N -0.505 5.505 20 Si 0.747 3.253 21 H -0.195 1.195 22 H -0.205 1.205 23 H -0.204 1.204 24 C -0.039 4.039 25 C -0.027 4.027 26 H 0.134 0.866 27 H 0.118 0.882 28 H 0.109 0.891 29 H 0.121 0.879 30 H 0.160 0.840 31 H 0.142 0.858 32 H 0.150 0.850 33 H 0.079 0.921 34 H 0.157 0.843 35 H 0.124 0.876 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.071 -13.048 18.077 22.663 hybrid contribution 2.580 0.524 0.359 2.657 sum 6.651 -12.524 18.437 23.259 Atomic orbital electron populations 1.81250 1.12178 1.06505 1.04989 1.28788 0.94607 0.94853 0.95416 1.18790 0.81436 1.00473 0.80232 1.93002 1.87431 1.97358 1.36888 1.23284 1.04186 0.96534 0.94690 1.22702 1.01943 0.81697 0.97119 1.48455 1.69734 1.11716 1.06232 1.18169 0.75758 0.84065 0.83866 1.90814 1.45242 1.19040 1.84730 1.19653 1.06488 0.97885 0.91750 1.22118 0.98332 0.94950 0.97991 1.21122 1.01845 1.00551 0.92617 1.22055 0.92678 0.93117 0.99426 1.22850 1.01264 0.98423 0.99105 1.83650 1.18224 1.45903 1.32374 1.22871 0.99564 1.29245 1.15003 0.90541 1.25008 0.97155 0.96454 0.94975 1.69995 1.26048 1.37656 1.16843 0.86061 0.81302 0.79470 0.78441 1.19473 1.20468 1.20417 1.21925 0.93464 0.97900 0.90656 1.22883 1.03500 0.95661 0.80615 0.86608 0.88243 0.89139 0.87947 0.83979 0.85751 0.85033 0.92081 0.84345 0.87566 0.87175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.38 -4.90 18.54 42.15 0.78 -4.12 16 2 C 0.18 1.86 14.29 -20.76 -0.30 1.57 16 3 C 0.21 1.42 1.63 -91.53 -0.15 1.27 16 4 F -0.17 -1.10 16.93 2.25 0.04 -1.06 16 5 C -0.15 -0.56 6.30 -25.35 -0.16 -0.72 16 6 C 0.09 0.49 4.98 -2.98 -0.01 0.48 16 7 N -0.63 -6.25 3.24 -170.87 -0.55 -6.80 16 8 C 0.59 8.87 7.82 -12.32 -0.10 8.77 16 9 O -0.52 -9.87 16.58 5.32 0.09 -9.78 16 10 C -0.15 -2.42 5.86 -104.99 -0.61 -3.03 16 11 C -0.12 -1.42 8.37 -39.12 -0.33 -1.75 16 12 C -0.14 -1.87 10.02 -39.67 -0.40 -2.27 16 13 C -0.05 -0.90 9.79 -39.25 -0.38 -1.28 16 14 C -0.11 -2.20 5.45 -39.00 -0.21 -2.42 16 15 S -0.04 -0.91 21.41 -107.50 -2.30 -3.22 16 16 C -0.52 -14.50 9.46 30.91 0.29 -14.20 16 17 H 0.08 2.12 7.79 -52.49 -0.41 1.71 16 18 C 0.07 2.03 5.49 -17.46 -0.10 1.93 16 19 N -0.87 -25.24 13.22 55.49 0.73 -24.51 16 20 Si 0.92 21.21 29.55 -169.99 -5.02 16.19 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 24 C -0.02 -0.35 9.34 -38.92 -0.36 -0.71 16 25 C 0.10 0.76 6.34 -2.13 -0.01 0.74 16 26 H 0.12 0.14 8.12 -51.93 -0.42 -0.28 16 27 H 0.10 0.32 7.84 -51.93 -0.41 -0.08 16 28 H 0.09 0.31 7.44 -51.94 -0.39 -0.07 16 29 H 0.10 0.59 5.92 -51.93 -0.31 0.28 16 30 H 0.14 1.12 3.44 -52.49 -0.18 0.94 16 31 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 32 H 0.13 2.22 8.06 -52.48 -0.42 1.79 16 33 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.14 2.92 7.68 -52.49 -0.40 2.52 16 35 H 0.11 0.99 7.71 -51.92 -0.40 0.59 16 36 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 334.43 15.07 5.04 5.04 Total: -1.00 -34.80 334.43 -7.35 -42.15 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: -3.32 Total: -2.26 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: -2.83 Total: -11.62 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 0.96 Total: -35.43 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 9 Polarization: -1.10 SS G_CDS: 0.04 Total: -1.06 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -0.91 SS G_CDS: -2.30 Total: -3.22 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.80 -7.35 -42.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417377700.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.004 kcal (2) G-P(sol) polarization free energy of solvation -34.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds