Wall clock time and date at job start Tue Mar 31 2020 13:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 F 1.39892 * 110.65872 * 273.03494 * 3 2 1 5 5 C 1.54626 * 110.73904 * 36.22543 * 3 2 1 6 6 C 1.54003 * 105.04354 * 96.66907 * 5 3 2 7 7 N 1.47488 * 107.08532 * 358.68921 * 6 5 3 8 8 C 1.34770 * 127.03520 * 205.40187 * 7 6 5 9 9 O 1.21555 * 120.00045 * 174.00078 * 8 7 6 10 10 C 1.47868 * 120.00175 * 353.99429 * 8 7 6 11 11 C 1.39672 * 120.09778 * 350.64275 * 10 8 7 12 12 C 1.38041 * 120.03766 * 179.97438 * 11 10 8 13 13 C 1.38184 * 120.24252 * 0.02562 * 12 11 10 14 14 C 1.39178 * 120.19919 * 359.95416 * 13 12 11 15 15 S 1.76201 * 120.01737 * 180.02562 * 14 13 12 16 16 C 1.76202 * 99.99972 * 271.90572 * 15 14 13 17 17 H 1.08000 * 120.00144 * 354.27106 * 16 15 14 18 18 C 1.38727 * 119.99828 * 174.27072 * 16 15 14 19 19 N 1.31625 * 120.00475 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00030 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.46739 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47065 * 120.00039 * 20 18 16 23 23 H 1.48500 * 109.47057 * 239.99985 * 20 18 16 24 24 C 1.38868 * 119.96231 * 359.76881 * 14 13 12 25 25 C 1.48112 * 105.92893 * 25.45148 * 7 6 5 26 26 H 1.08998 * 110.32150 * 215.55958 * 5 3 2 27 27 H 1.08998 * 110.32642 * 337.67352 * 5 3 2 28 28 H 1.08988 * 109.91522 * 118.05736 * 6 5 3 29 29 H 1.09007 * 109.91020 * 239.14372 * 6 5 3 30 30 H 1.08002 * 119.98160 * 0.02562 * 11 10 8 31 31 H 1.07999 * 119.88063 * 179.97438 * 12 11 10 32 32 H 1.08004 * 119.89334 * 179.97438 * 13 12 11 33 33 H 0.97000 * 120.00438 * 180.02562 * 19 18 16 34 34 H 1.07999 * 120.12307 * 180.27269 * 24 14 13 35 35 H 1.09008 * 110.66375 * 202.25966 * 25 7 6 36 36 H 1.09000 * 110.66508 * 79.14915 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 9 3.1016 -0.0684 1.3071 5 6 3.1561 -1.1656 -0.8546 6 6 3.4589 -0.5448 -2.2310 7 7 3.0713 0.8765 -2.1600 8 6 2.7112 1.6720 -3.1865 9 8 2.3102 2.7989 -2.9705 10 6 2.8041 1.1739 -4.5757 11 6 3.4432 -0.0387 -4.8438 12 6 3.5288 -0.5028 -6.1410 13 6 2.9841 0.2287 -7.1792 14 6 2.3446 1.4381 -6.9234 15 16 1.6512 2.3666 -8.2507 16 6 3.0534 3.3256 -8.7186 17 1 3.9600 3.2776 -8.1336 18 6 2.9929 4.1422 -9.8383 19 7 1.8878 4.2012 -10.5510 20 14 4.4792 5.1595 -10.3340 21 1 5.5869 4.9170 -9.3752 22 1 4.9129 4.7695 -11.6997 23 1 4.1194 6.6002 -10.3215 24 6 2.2487 1.9100 -5.6209 25 6 3.1600 1.2510 -0.7297 26 1 4.0680 -1.5646 -0.4102 27 1 2.4063 -1.9512 -0.9485 28 1 4.5232 -0.6289 -2.4502 29 1 2.8799 -1.0522 -3.0026 30 1 3.8701 -0.6141 -4.0355 31 1 4.0239 -1.4406 -6.3454 32 1 3.0546 -0.1395 -8.1921 33 1 1.8456 4.7719 -11.3342 34 1 1.7492 2.8460 -5.4189 35 1 2.5400 2.1230 -0.5212 36 1 4.1954 1.4371 -0.4443 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417377700.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:25 Heat of formation + Delta-G solvation = -21.207463 kcal Electronic energy + Delta-G solvation = -23217.998742 eV Core-core repulsion = 19515.048385 eV Total energy + Delta-G solvation = -3702.950357 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.074 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.15283 -41.62635 -39.49870 -38.70176 -37.43813 -34.66114 -33.34625 -31.99736 -31.81184 -30.10585 -27.75573 -26.56814 -24.33563 -23.78904 -23.13913 -21.20016 -19.99484 -19.79699 -18.64222 -17.71647 -17.45118 -16.98203 -16.93956 -16.52072 -16.10800 -15.92500 -15.65128 -15.39499 -15.09947 -14.92066 -14.72669 -14.56740 -14.31890 -14.17533 -13.93561 -13.81471 -13.54561 -13.31558 -13.14186 -12.98650 -12.70101 -12.51611 -12.30562 -12.14074 -11.90988 -11.69053 -11.27178 -11.21140 -10.70617 -10.13159 -9.83119 -9.68969 -8.82930 -8.39991 -6.20700 -0.19875 0.24625 1.25112 1.26099 1.29801 1.36250 1.45699 1.53119 1.66871 1.75517 2.19162 2.23535 2.75899 2.92934 2.95387 3.05149 3.36472 3.41035 3.52020 3.95263 4.00822 4.15193 4.24266 4.29173 4.37560 4.47003 4.57217 4.60548 4.67861 4.82352 4.92475 4.94966 5.12928 5.22518 5.31962 5.37779 5.51112 5.88089 6.07066 6.15218 6.19213 6.90185 7.00290 8.67411 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.023953 B = 0.002857 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.690596 B = 9796.798953 C = 9926.953215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C 0.202 3.798 3 C 0.220 3.780 4 F -0.161 7.161 5 C -0.132 4.132 6 C 0.070 3.930 7 N -0.618 5.618 8 C 0.584 3.416 9 O -0.580 6.580 10 C -0.155 4.155 11 C -0.085 4.085 12 C -0.120 4.120 13 C -0.064 4.064 14 C -0.129 4.129 15 S -0.103 6.103 16 C -0.534 4.534 17 H 0.067 0.933 18 C 0.019 3.981 19 N -0.907 5.907 20 Si 0.994 3.006 21 H -0.265 1.265 22 H -0.265 1.265 23 H -0.273 1.273 24 C -0.048 4.048 25 C 0.093 3.907 26 H 0.158 0.842 27 H 0.109 0.891 28 H 0.134 0.866 29 H 0.107 0.893 30 H 0.203 0.797 31 H 0.180 0.820 32 H 0.130 0.870 33 H 0.274 0.726 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.268 -17.327 20.736 29.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.112 5.112 2 C -0.118 4.118 3 C 0.197 3.803 4 F -0.141 7.141 5 C -0.170 4.170 6 C -0.050 4.050 7 N -0.352 5.352 8 C 0.376 3.624 9 O -0.460 6.460 10 C -0.160 4.160 11 C -0.102 4.102 12 C -0.139 4.139 13 C -0.085 4.085 14 C -0.240 4.240 15 S 0.131 5.869 16 C -0.681 4.681 17 H 0.086 0.914 18 C -0.186 4.186 19 N -0.543 5.543 20 Si 0.816 3.184 21 H -0.189 1.189 22 H -0.190 1.190 23 H -0.198 1.198 24 C -0.069 4.069 25 C -0.031 4.031 26 H 0.176 0.824 27 H 0.128 0.872 28 H 0.152 0.848 29 H 0.125 0.875 30 H 0.219 0.781 31 H 0.198 0.802 32 H 0.148 0.852 33 H 0.083 0.917 34 H 0.119 0.881 35 H 0.098 0.902 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 8.128 -16.585 20.174 27.352 hybrid contribution 1.329 1.472 -0.036 1.984 sum 9.457 -15.113 20.138 26.895 Atomic orbital electron populations 1.81269 1.14327 1.08639 1.06984 1.29638 0.95554 0.92989 0.93575 1.18917 0.78986 1.01548 0.80855 1.93027 1.86992 1.97376 1.36703 1.23377 1.06191 0.94927 0.92547 1.23206 1.04516 0.78556 0.98762 1.48364 1.67453 1.13303 1.06050 1.18045 0.75872 0.83871 0.84620 1.90788 1.48044 1.21703 1.85508 1.19799 1.06034 0.98818 0.91332 1.22821 0.95092 0.92850 0.99438 1.21663 0.99534 1.01360 0.91329 1.22130 0.92992 0.92261 1.01096 1.22448 1.04588 0.99813 0.97144 1.83545 1.20174 1.47748 1.35408 1.23075 0.99544 1.30239 1.15250 0.91436 1.26029 1.00354 0.97454 0.94783 1.70120 1.28219 1.38610 1.17400 0.84971 0.77340 0.77580 0.78523 1.18871 1.18967 1.19847 1.21605 0.95688 0.97880 0.91772 1.23137 1.05263 0.95376 0.79327 0.82381 0.87206 0.84800 0.87516 0.78094 0.80239 0.85194 0.91706 0.88149 0.90176 0.83382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -11.47 18.54 20.01 0.37 -11.10 16 2 C 0.20 3.81 14.29 89.44 1.28 5.09 16 3 C 0.22 2.09 1.63 -11.38 -0.02 2.07 16 4 F -0.16 -1.47 16.93 44.97 0.76 -0.71 16 5 C -0.13 -0.15 6.30 31.49 0.20 0.05 16 6 C 0.07 0.33 4.98 86.53 0.43 0.76 16 7 N -0.62 -10.34 3.24 -812.78 -2.63 -12.97 16 8 C 0.58 17.27 7.82 86.79 0.68 17.95 16 9 O -0.58 -23.18 16.58 -3.89 -0.06 -23.25 16 10 C -0.15 -4.76 5.86 -20.11 -0.12 -4.88 16 11 C -0.08 -1.67 8.37 22.57 0.19 -1.48 16 12 C -0.12 -2.60 10.02 22.21 0.22 -2.38 16 13 C -0.06 -2.17 9.79 22.48 0.22 -1.95 16 14 C -0.13 -5.64 5.45 22.65 0.12 -5.51 16 15 S -0.10 -5.69 21.41 -56.49 -1.21 -6.90 16 16 C -0.53 -31.39 9.46 67.94 0.64 -30.74 16 17 H 0.07 3.93 7.79 -2.91 -0.02 3.91 16 18 C 0.02 1.08 5.49 84.84 0.47 1.55 16 19 N -0.91 -54.80 13.22 21.64 0.29 -54.52 16 20 Si 0.99 44.43 29.55 68.60 2.03 46.45 16 21 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 22 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 24 C -0.05 -1.98 9.34 22.70 0.21 -1.77 16 25 C 0.09 1.16 6.34 86.73 0.55 1.71 16 26 H 0.16 -0.97 8.12 -2.39 -0.02 -0.99 16 27 H 0.11 0.04 7.84 -2.39 -0.02 0.02 16 28 H 0.13 -0.33 7.44 -2.39 -0.02 -0.34 16 29 H 0.11 0.48 5.92 -2.38 -0.01 0.47 16 30 H 0.20 1.56 3.44 -2.91 -0.01 1.55 16 31 H 0.18 2.08 8.06 -2.91 -0.02 2.06 16 32 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 33 H 0.27 15.27 8.31 -92.71 -0.77 14.49 16 34 H 0.10 4.81 7.68 -2.91 -0.02 4.79 16 35 H 0.08 1.47 7.71 -2.38 -0.02 1.45 16 36 H 0.15 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -88.08 334.43 5.76 -82.32 By element: Atomic # 1 Polarization: -0.93 SS G_CDS: 1.14 Total: 0.21 kcal Atomic # 6 Polarization: -24.61 SS G_CDS: 5.08 Total: -19.54 kcal Atomic # 7 Polarization: -76.61 SS G_CDS: -1.98 Total: -78.59 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.06 Total: -23.25 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.76 Total: -0.71 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: -5.69 SS G_CDS: -1.21 Total: -6.90 kcal Total: -88.08 5.76 -82.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417377700.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.113 kcal (2) G-P(sol) polarization free energy of solvation -88.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds