Wall clock time and date at job start Tue Mar 31 2020 13:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31577 * 1 3 3 Si 1.86801 * 119.99902 * 2 1 4 4 H 1.48503 * 109.47073 * 270.00113 * 3 2 1 5 5 H 1.48500 * 109.46967 * 30.00061 * 3 2 1 6 6 H 1.48499 * 109.46952 * 150.00025 * 3 2 1 7 7 C 1.38637 * 119.99996 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99771 * 359.97438 * 7 2 1 9 9 O 1.34813 * 119.99630 * 180.02562 * 7 2 1 10 10 C 1.35783 * 116.99648 * 185.40931 * 9 7 2 11 11 C 1.38907 * 119.99914 * 5.91442 * 10 9 7 12 12 C 1.38000 * 120.00081 * 179.97438 * 11 10 9 13 13 C 1.38913 * 119.99903 * 0.02854 * 12 11 10 14 14 N 1.40001 * 120.00296 * 179.97438 * 13 12 11 15 15 C 1.34778 * 119.99909 * 146.39420 * 14 13 12 16 16 O 1.21291 * 120.00041 * 354.80148 * 15 14 13 17 17 C 1.50699 * 119.99664 * 174.79692 * 15 14 13 18 18 H 1.09001 * 110.86454 * 301.20468 * 17 15 14 19 19 C 1.54741 * 110.97230 * 65.00604 * 17 15 14 20 20 C 1.51681 * 102.55104 * 142.36604 * 19 17 15 21 21 C 1.47472 * 125.86620 * 164.61017 * 20 19 17 22 22 O 1.21474 * 119.99972 * 359.97438 * 21 20 19 23 23 O 1.34763 * 120.00277 * 179.97438 * 21 20 19 24 24 N 1.29059 * 108.27367 * 344.86855 * 20 19 17 25 25 O 1.41399 * 112.87344 * 359.24933 * 24 20 19 26 26 C 1.38922 * 119.99786 * 0.24750 * 13 12 11 27 27 C 1.38000 * 119.99611 * 359.47051 * 26 13 12 28 28 H 0.96998 * 119.99744 * 359.97438 * 1 2 3 29 29 H 1.08004 * 119.99620 * 359.97438 * 11 10 9 30 30 H 1.08003 * 119.99684 * 180.02562 * 12 11 10 31 31 H 0.96996 * 119.99534 * 326.40355 * 14 13 12 32 32 H 1.09002 * 110.79088 * 24.10148 * 19 17 15 33 33 H 1.09005 * 110.95891 * 260.70941 * 19 17 15 34 34 H 0.96693 * 117.00115 * 179.97438 * 23 21 20 35 35 H 1.08007 * 120.00047 * 179.73033 * 26 13 12 36 36 H 1.08004 * 119.99692 * 180.29622 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4972 2.0465 -1.4001 5 1 1.4471 2.6526 0.7001 6 1 3.5473 1.4402 0.7000 7 6 2.0090 -1.2006 0.0005 8 1 1.4689 -2.1359 0.0014 9 8 3.3571 -1.2005 0.0011 10 6 3.9736 -2.4050 -0.1125 11 6 3.2228 -3.5503 -0.3455 12 6 3.8494 -4.7743 -0.4614 13 6 5.2308 -4.8613 -0.3445 14 7 5.8665 -6.1032 -0.4616 15 6 7.0936 -6.1827 -1.0134 16 8 7.6077 -5.1948 -1.4938 17 6 7.8268 -7.4992 -1.0334 18 1 7.9681 -7.8802 -0.0220 19 6 7.0862 -8.5322 -1.9161 20 6 8.2283 -9.2743 -2.5836 21 6 8.1256 -10.5675 -3.2849 22 8 7.0530 -11.1322 -3.3637 23 8 9.2217 -11.1229 -3.8384 24 7 9.3065 -8.5823 -2.4278 25 8 9.0889 -7.3775 -1.7203 26 6 5.9811 -3.7167 -0.1058 27 6 5.3550 -2.4919 0.0043 28 1 -0.4850 0.8401 0.0004 29 1 2.1487 -3.4827 -0.4359 30 1 3.2656 -5.6647 -0.6430 31 1 5.4238 -6.9063 -0.1457 32 1 6.4639 -8.0317 -2.6579 33 1 6.4889 -9.2095 -1.3057 34 1 9.1049 -11.9714 -4.2871 35 1 7.0548 -3.7849 -0.0106 36 1 5.9387 -1.6014 0.1851 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480273.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:22 Heat of formation + Delta-G solvation = -80.006736 kcal Electronic energy + Delta-G solvation = -25099.951082 eV Core-core repulsion = 20939.325337 eV Total energy + Delta-G solvation = -4160.625746 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.093 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.57335 -40.63411 -39.77907 -38.77694 -36.88983 -36.73170 -34.37942 -33.80538 -32.43151 -31.73523 -30.41211 -28.28479 -26.02409 -25.59854 -24.80207 -22.50395 -21.82002 -21.05149 -20.41509 -18.89410 -18.41150 -18.13635 -17.77769 -17.46415 -16.59783 -16.54368 -16.37763 -15.94189 -15.18190 -14.84034 -14.63605 -14.03817 -14.02080 -13.91558 -13.79275 -13.54552 -13.36575 -12.91202 -12.68517 -12.40693 -12.32493 -12.29770 -11.95969 -11.82426 -11.76493 -11.63297 -11.00559 -10.83977 -10.60039 -10.22349 -9.97188 -9.78967 -9.41390 -8.84597 -8.39656 -7.17886 -6.47559 -4.13412 0.04664 1.52340 1.81935 1.98958 2.00996 2.17731 2.50039 3.00972 3.19776 3.24226 3.38473 3.48732 3.67965 4.01755 4.13818 4.19951 4.37670 4.41406 4.62740 4.81878 4.90064 4.92609 5.03268 5.38531 5.58362 5.59224 5.89426 6.00474 6.04012 6.24913 6.53409 6.64409 6.77275 6.94290 7.04852 7.13629 7.38229 7.47040 7.70101 7.93030 8.01364 8.87484 9.48964 10.59699 Molecular weight = 320.09amu Principal moments of inertia in cm(-1) A = 0.033298 B = 0.002206 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.695735 B =12689.705152 C =13210.962724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.390 4.390 8 H 0.107 0.893 9 O -0.213 6.213 10 C 0.154 3.846 11 C -0.206 4.206 12 C -0.087 4.087 13 C 0.039 3.961 14 N -0.651 5.651 15 C 0.511 3.489 16 O -0.494 6.494 17 C 0.026 3.974 18 H 0.127 0.873 19 C -0.123 4.123 20 C 0.055 3.945 21 C 0.566 3.434 22 O -0.482 6.482 23 O -0.493 6.493 24 N -0.199 5.199 25 O -0.141 6.141 26 C -0.068 4.068 27 C -0.176 4.176 28 H 0.280 0.720 29 H 0.139 0.861 30 H 0.115 0.885 31 H 0.405 0.595 32 H 0.121 0.879 33 H 0.127 0.873 34 H 0.425 0.575 35 H 0.126 0.874 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.877 -22.066 -2.489 26.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.465 4.465 8 H 0.124 0.876 9 O -0.118 6.118 10 C 0.102 3.898 11 C -0.226 4.226 12 C -0.107 4.107 13 C -0.053 4.053 14 N -0.298 5.298 15 C 0.294 3.706 16 O -0.367 6.367 17 C -0.036 4.036 18 H 0.144 0.856 19 C -0.163 4.163 20 C -0.138 4.138 21 C 0.406 3.594 22 O -0.366 6.366 23 O -0.305 6.305 24 N 0.058 4.942 25 O -0.165 6.165 26 C -0.088 4.088 27 C -0.196 4.196 28 H 0.090 0.910 29 H 0.157 0.843 30 H 0.133 0.867 31 H 0.240 0.760 32 H 0.139 0.861 33 H 0.145 0.855 34 H 0.286 0.714 35 H 0.144 0.856 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 15.093 -20.597 -2.857 25.694 hybrid contribution -1.079 -0.376 0.049 1.143 sum 14.014 -20.972 -2.808 25.379 Atomic orbital electron populations 1.69652 1.05577 1.28619 1.47588 1.24485 0.95053 0.98945 0.95535 0.86175 0.80362 0.81310 0.79062 1.19832 1.20729 1.18256 1.20755 0.76841 0.96643 1.52291 0.87586 1.83605 1.22639 1.25617 1.79927 1.19178 0.91585 0.85708 0.93376 1.21110 1.01295 0.91516 1.08645 1.20511 0.92004 0.97613 1.00577 1.17221 0.91453 0.84485 1.12157 1.43065 1.16925 1.09419 1.60354 1.19791 0.82278 0.89266 0.79240 1.90816 1.66133 1.36694 1.43060 1.23735 0.85580 0.94940 0.99370 0.85562 1.22854 0.97822 0.95993 0.99587 1.24652 0.94247 0.94845 1.00044 1.19081 0.81803 0.82728 0.75815 1.91007 1.28840 1.61267 1.55498 1.84636 1.37337 1.41483 1.67042 1.78657 1.20967 0.92407 1.02138 1.91498 1.35651 1.27954 1.61355 1.20595 0.99366 0.90777 0.98055 1.20121 0.91843 0.97710 1.09928 0.90966 0.84338 0.86686 0.76025 0.86133 0.85490 0.71450 0.85617 0.85951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.77 13.96 55.48 0.77 -24.00 16 2 C 0.06 1.75 5.49 -17.51 -0.10 1.65 16 3 Si 0.91 21.37 28.62 -169.99 -4.86 16.50 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.26 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.39 -10.66 9.90 30.88 0.31 -10.36 16 8 H 0.11 2.93 5.53 -52.49 -0.29 2.64 16 9 O -0.21 -5.49 8.58 -0.01 0.00 -5.49 16 10 C 0.15 3.45 6.65 -39.09 -0.26 3.19 16 11 C -0.21 -4.15 9.13 -39.42 -0.36 -4.51 16 12 C -0.09 -1.41 9.96 -39.42 -0.39 -1.80 16 13 C 0.04 0.61 6.27 -83.62 -0.52 0.08 16 14 N -0.65 -7.25 5.33 -9.82 -0.05 -7.30 16 15 C 0.51 6.24 6.87 -10.99 -0.08 6.17 16 16 O -0.49 -8.49 14.31 -13.28 -0.19 -8.68 16 17 C 0.03 0.22 4.23 -26.97 -0.11 0.11 16 18 H 0.13 0.67 8.14 -51.93 -0.42 0.25 16 19 C -0.12 -0.78 6.43 -26.48 -0.17 -0.95 16 20 C 0.05 0.44 7.30 -79.51 -0.58 -0.14 16 21 C 0.57 3.97 8.34 34.49 0.29 4.26 16 22 O -0.48 -4.22 17.74 -19.24 -0.34 -4.56 16 23 O -0.49 -2.43 13.43 -40.66 -0.55 -2.98 16 24 N -0.20 -2.09 12.51 35.26 0.44 -1.65 16 25 O -0.14 -1.69 11.83 -30.20 -0.36 -2.05 16 26 C -0.07 -1.21 8.65 -39.42 -0.34 -1.55 16 27 C -0.18 -3.49 9.98 -39.42 -0.39 -3.89 16 28 H 0.28 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.14 2.92 5.71 -52.48 -0.30 2.62 16 30 H 0.12 1.48 8.06 -52.48 -0.42 1.05 16 31 H 0.40 2.79 8.82 -40.82 -0.36 2.43 16 32 H 0.12 0.80 7.90 -51.93 -0.41 0.39 16 33 H 0.13 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.43 -0.13 9.11 45.56 0.42 0.28 16 35 H 0.13 2.17 6.45 -52.48 -0.34 1.83 16 36 H 0.12 2.29 8.06 -52.48 -0.42 1.87 16 LS Contribution 331.06 15.07 4.99 4.99 Total: -1.00 -35.37 331.06 -4.97 -40.34 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -2.11 Total: 2.62 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -2.71 Total: -7.75 kcal Atomic # 7 Polarization: -34.12 SS G_CDS: 1.16 Total: -32.95 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -1.43 Total: -23.75 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.86 Total: 16.50 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.37 -4.97 -40.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480273.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.667 kcal (2) G-P(sol) polarization free energy of solvation -35.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds