Wall clock time and date at job start Tue Mar 31 2020 13:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37905 * 119.51559 * 2 1 4 4 C 1.39860 * 119.17222 * 180.02562 * 3 2 1 5 5 C 1.48459 * 120.86377 * 180.02562 * 4 3 2 6 6 N 1.34043 * 126.67477 * 359.65508 * 5 4 3 7 7 N 1.28986 * 107.26718 * 179.83675 * 6 5 4 8 8 N 1.28729 * 108.94465 * 0.43857 * 7 6 5 9 9 H 0.97004 * 125.34324 * 179.70014 * 8 7 6 10 10 N 1.28874 * 109.31612 * 359.72554 * 8 7 6 11 11 C 1.39492 * 118.26637 * 359.97438 * 4 3 2 12 12 C 1.38801 * 118.96844 * 0.02562 * 11 4 3 13 13 N 1.39432 * 119.63927 * 179.97438 * 12 11 4 14 14 C 1.34777 * 119.99932 * 185.09000 * 13 12 11 15 15 O 1.21285 * 119.99867 * 355.18222 * 14 13 12 16 16 C 1.50705 * 120.00227 * 174.90403 * 14 13 12 17 17 S 1.81000 * 109.47029 * 180.02562 * 16 14 13 18 18 C 1.76198 * 99.99872 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00236 * 0.02562 * 18 17 16 20 20 C 1.38793 * 120.00296 * 179.97438 * 18 17 16 21 21 N 1.31635 * 120.00291 * 180.02562 * 20 18 17 22 22 Si 1.86806 * 119.99828 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46881 * 90.00027 * 22 20 18 24 24 H 1.48502 * 109.47315 * 209.99828 * 22 20 18 25 25 H 1.48496 * 109.47036 * 330.00169 * 22 20 18 26 26 N 1.31950 * 119.51397 * 180.28667 * 2 1 3 27 27 H 1.09005 * 109.46798 * 90.00571 * 1 2 3 28 28 H 1.09000 * 109.47498 * 209.99980 * 1 2 3 29 29 H 1.08996 * 109.47345 * 330.00566 * 1 2 3 30 30 H 1.07994 * 120.41651 * 0.03667 * 3 2 1 31 31 H 1.07997 * 120.51550 * 179.97438 * 11 4 3 32 32 H 0.96997 * 120.00387 * 5.09288 * 13 12 11 33 33 H 1.08997 * 109.46996 * 300.00293 * 16 14 13 34 34 H 1.09001 * 109.46899 * 60.00552 * 16 14 13 35 35 H 0.96998 * 119.99726 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2001 0.0000 4 6 3.5850 1.1917 -0.0005 5 6 4.3542 2.4615 0.0000 6 7 3.8495 3.7032 -0.0054 7 7 4.8464 4.5217 0.0008 8 7 5.9420 3.8459 0.0005 9 1 6.8350 4.2247 0.0004 10 7 5.6663 2.5870 -0.0001 11 6 4.2382 -0.0408 -0.0005 12 6 3.4800 -1.2035 -0.0005 13 7 4.1185 -2.4430 -0.0010 14 6 3.3935 -3.5744 -0.1046 15 8 2.1819 -3.5199 -0.1093 16 6 4.0883 -4.9067 -0.2208 17 16 2.8521 -6.2231 -0.3435 18 6 3.9107 -7.6264 -0.4654 19 1 4.9828 -7.4971 -0.4494 20 6 3.3667 -8.8981 -0.5810 21 7 4.1576 -9.9465 -0.6715 22 14 1.5123 -9.1220 -0.6065 23 1 1.0251 -9.0564 -2.0078 24 1 1.1651 -10.4427 -0.0230 25 1 0.8727 -8.0449 0.1909 26 7 2.1570 -1.1483 -0.0057 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5137 30 1 1.6453 2.1347 0.0006 31 1 5.3171 -0.0897 -0.0014 32 1 5.0844 -2.4911 0.0732 33 1 4.7150 -4.9130 -1.1126 34 1 4.7084 -5.0712 0.6604 35 1 3.7774 -10.8352 -0.7527 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591858253.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:10 Heat of formation + Delta-G solvation = 138.393160 kcal Electronic energy + Delta-G solvation = -22597.013865 eV Core-core repulsion = 18953.197023 eV Total energy + Delta-G solvation = -3643.816842 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.080 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.91436 -40.89912 -38.96898 -35.25666 -34.93677 -34.40604 -32.45958 -32.08778 -31.57162 -29.32106 -27.65677 -25.65181 -25.36009 -24.99973 -22.96036 -22.02376 -20.51909 -19.61519 -18.06061 -17.59240 -17.56224 -16.74859 -16.32718 -15.71100 -15.51563 -15.18497 -14.98161 -14.44277 -14.38887 -13.89001 -13.56950 -13.44908 -12.96300 -12.81375 -12.74316 -12.36192 -12.34317 -12.23364 -11.84805 -11.63043 -11.55611 -11.28961 -11.01996 -10.66641 -10.47469 -10.12718 -9.84926 -9.60246 -9.06773 -9.02023 -8.53895 -8.35765 -6.94984 -6.30794 -4.03216 0.29477 0.77256 0.91070 1.77252 2.02479 2.52751 2.88857 3.03737 3.21559 3.32577 3.49733 3.53822 3.71058 3.72952 4.17633 4.31888 4.62406 4.67098 4.75529 4.77735 4.94535 5.03222 5.08321 5.24701 5.30121 5.38489 5.56885 5.68468 5.71258 5.84887 5.89969 5.93514 5.94687 6.16749 6.60516 7.14011 7.67977 7.91956 7.95777 8.39086 8.39885 9.15188 10.78300 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.028446 B = 0.002459 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.068118 B =11384.382549 C =12338.479202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.168 3.832 3 C -0.171 4.171 4 C 0.056 3.944 5 C 0.220 3.780 6 N -0.260 5.260 7 N -0.048 5.048 8 N -0.225 5.225 9 H 0.477 0.523 10 N -0.284 5.284 11 C -0.183 4.183 12 C 0.380 3.620 13 N -0.663 5.663 14 C 0.518 3.482 15 O -0.446 6.446 16 C -0.124 4.124 17 S -0.136 6.136 18 C -0.522 4.522 19 H 0.089 0.911 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 N -0.463 5.463 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.146 0.854 31 H 0.145 0.855 32 H 0.418 0.582 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.277 28.242 1.844 28.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.029 3.971 3 C -0.194 4.194 4 C 0.045 3.955 5 C -0.060 4.060 6 N -0.133 5.133 7 N -0.043 5.043 8 N -0.072 5.072 9 H 0.332 0.668 10 N -0.136 5.136 11 C -0.209 4.209 12 C 0.148 3.852 13 N -0.311 5.311 14 C 0.303 3.697 15 O -0.312 6.312 16 C -0.275 4.275 17 S 0.090 5.910 18 C -0.670 4.670 19 H 0.107 0.893 20 C -0.113 4.113 21 N -0.516 5.516 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 N -0.179 5.179 27 H 0.100 0.900 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.164 0.836 31 H 0.163 0.837 32 H 0.255 0.745 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.876 27.867 1.797 27.938 hybrid contribution 2.557 0.091 -0.052 2.559 sum 3.433 27.958 1.746 28.222 Atomic orbital electron populations 1.20758 0.87958 1.03878 1.03577 1.21155 0.97317 0.86521 0.92125 1.21843 0.92470 1.00275 1.04843 1.17100 0.91863 0.86673 0.99894 1.23472 0.86506 0.93914 1.02154 1.76110 1.21361 0.98660 1.17188 1.78949 0.88596 1.22088 1.14635 1.47763 1.11817 1.01796 1.45776 0.66826 1.74957 1.17060 1.00402 1.21192 1.21339 1.01282 0.90239 1.08080 1.18254 0.88642 0.85216 0.93075 1.43803 1.11179 1.03307 1.72835 1.20591 0.88191 0.84561 0.76333 1.90815 1.12958 1.85560 1.41840 1.23302 1.03807 0.94300 1.06042 1.84837 1.10889 0.98601 1.96701 1.22301 0.95262 0.91043 1.58388 0.89305 1.24711 0.98743 0.94692 0.93153 1.69937 1.35429 0.98693 1.47541 0.86740 0.85296 0.79614 0.80246 1.19175 1.19918 1.15852 1.67544 1.07134 1.28998 1.14212 0.89956 0.89697 0.90436 0.83573 0.83707 0.74496 0.88121 0.88135 0.91906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.01 10.16 36.01 0.37 -0.65 16 2 C 0.17 2.06 6.77 -82.66 -0.56 1.50 16 3 C -0.17 -1.79 9.42 -39.10 -0.37 -2.16 16 4 C 0.06 0.60 5.91 -104.61 -0.62 -0.02 16 5 C 0.22 2.22 7.97 -156.31 -1.25 0.97 16 6 N -0.26 -2.69 12.33 32.15 0.40 -2.30 16 7 N -0.05 -0.40 13.47 60.35 0.81 0.42 16 8 N -0.23 -1.29 7.90 60.35 0.48 -0.81 16 9 H 0.48 0.38 8.96 -340.36 -3.05 -2.67 16 10 N -0.28 -2.38 12.17 32.17 0.39 -1.98 16 11 C -0.18 -1.95 9.62 -38.91 -0.37 -2.33 16 12 C 0.38 5.14 7.42 -154.71 -1.15 3.99 16 13 N -0.66 -8.66 5.39 -11.46 -0.06 -8.72 16 14 C 0.52 9.09 7.81 -10.98 -0.09 9.00 16 15 O -0.45 -9.55 14.12 5.55 0.08 -9.47 16 16 C -0.12 -2.29 6.16 36.01 0.22 -2.07 16 17 S -0.14 -3.39 18.55 -107.50 -1.99 -5.38 16 18 C -0.52 -14.79 10.04 30.94 0.31 -14.48 16 19 H 0.09 2.61 8.03 -52.48 -0.42 2.19 16 20 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 21 N -0.88 -26.29 13.97 55.49 0.78 -25.51 16 22 Si 0.86 21.58 27.74 -169.99 -4.71 16.86 16 23 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 25 H -0.23 -5.89 6.74 56.52 0.38 -5.51 16 26 N -0.46 -7.17 7.78 -8.67 -0.07 -7.24 16 27 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.08 0.53 8.07 -51.93 -0.42 0.12 16 30 H 0.15 1.26 7.97 -52.49 -0.42 0.84 16 31 H 0.15 1.19 7.97 -52.49 -0.42 0.78 16 32 H 0.42 3.71 8.70 -40.82 -0.36 3.35 16 33 H 0.10 1.71 8.14 -51.92 -0.42 1.28 16 34 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 35 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 331.72 15.07 5.00 5.00 Total: -1.00 -37.11 331.72 -8.43 -45.54 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -5.93 Total: -2.85 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -3.60 Total: -3.56 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: 2.72 Total: -46.15 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.08 Total: -9.47 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.71 Total: 16.86 kcal Atomic # 16 Polarization: -3.39 SS G_CDS: -1.99 Total: -5.38 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -37.11 -8.43 -45.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591858253.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.933 kcal (2) G-P(sol) polarization free energy of solvation -37.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds