Wall clock time and date at job start Tue Mar 31 2020 13:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37905 * 119.51559 * 2 1 4 4 C 1.39860 * 119.17222 * 180.02562 * 3 2 1 5 5 C 1.48459 * 120.86377 * 180.02562 * 4 3 2 6 6 N 1.34043 * 126.67477 * 359.65508 * 5 4 3 7 7 N 1.28986 * 107.26718 * 179.83675 * 6 5 4 8 8 N 1.28729 * 108.94465 * 0.43857 * 7 6 5 9 9 H 0.97004 * 125.34324 * 179.70014 * 8 7 6 10 10 N 1.28874 * 109.31612 * 359.72554 * 8 7 6 11 11 C 1.39492 * 118.26637 * 359.97438 * 4 3 2 12 12 C 1.38801 * 118.96844 * 0.02562 * 11 4 3 13 13 N 1.39432 * 119.63927 * 179.97438 * 12 11 4 14 14 C 1.34777 * 119.99932 * 185.09000 * 13 12 11 15 15 O 1.21285 * 119.99867 * 355.18222 * 14 13 12 16 16 C 1.50705 * 120.00227 * 174.90403 * 14 13 12 17 17 S 1.81000 * 109.47029 * 180.02562 * 16 14 13 18 18 C 1.76198 * 99.99872 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00236 * 0.02562 * 18 17 16 20 20 C 1.38793 * 120.00296 * 179.97438 * 18 17 16 21 21 N 1.31635 * 120.00291 * 180.02562 * 20 18 17 22 22 Si 1.86806 * 119.99828 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46881 * 90.00027 * 22 20 18 24 24 H 1.48502 * 109.47315 * 209.99828 * 22 20 18 25 25 H 1.48496 * 109.47036 * 330.00169 * 22 20 18 26 26 N 1.31950 * 119.51397 * 180.28667 * 2 1 3 27 27 H 1.09005 * 109.46798 * 90.00571 * 1 2 3 28 28 H 1.09000 * 109.47498 * 209.99980 * 1 2 3 29 29 H 1.08996 * 109.47345 * 330.00566 * 1 2 3 30 30 H 1.07994 * 120.41651 * 0.03667 * 3 2 1 31 31 H 1.07997 * 120.51550 * 179.97438 * 11 4 3 32 32 H 0.96997 * 120.00387 * 5.09288 * 13 12 11 33 33 H 1.08997 * 109.46996 * 300.00293 * 16 14 13 34 34 H 1.09001 * 109.46899 * 60.00552 * 16 14 13 35 35 H 0.96998 * 119.99726 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2001 0.0000 4 6 3.5850 1.1917 -0.0005 5 6 4.3542 2.4615 0.0000 6 7 3.8495 3.7032 -0.0054 7 7 4.8464 4.5217 0.0008 8 7 5.9420 3.8459 0.0005 9 1 6.8350 4.2247 0.0004 10 7 5.6663 2.5870 -0.0001 11 6 4.2382 -0.0408 -0.0005 12 6 3.4800 -1.2035 -0.0005 13 7 4.1185 -2.4430 -0.0010 14 6 3.3935 -3.5744 -0.1046 15 8 2.1819 -3.5199 -0.1093 16 6 4.0883 -4.9067 -0.2208 17 16 2.8521 -6.2231 -0.3435 18 6 3.9107 -7.6264 -0.4654 19 1 4.9828 -7.4971 -0.4494 20 6 3.3667 -8.8981 -0.5810 21 7 4.1576 -9.9465 -0.6715 22 14 1.5123 -9.1220 -0.6065 23 1 1.0251 -9.0564 -2.0078 24 1 1.1651 -10.4427 -0.0230 25 1 0.8727 -8.0449 0.1909 26 7 2.1570 -1.1483 -0.0057 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5137 30 1 1.6453 2.1347 0.0006 31 1 5.3171 -0.0897 -0.0014 32 1 5.0844 -2.4911 0.0732 33 1 4.7150 -4.9130 -1.1126 34 1 4.7084 -5.0712 0.6604 35 1 3.7774 -10.8352 -0.7527 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001591858253.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:09 Heat of formation + Delta-G solvation = 110.914575 kcal Electronic energy + Delta-G solvation = -22598.205426 eV Core-core repulsion = 18953.197023 eV Total energy + Delta-G solvation = -3645.008403 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.080 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.55733 -41.91464 -40.18240 -36.31457 -35.75822 -35.10654 -34.65912 -32.98170 -32.51224 -30.65836 -28.53398 -27.83982 -26.14088 -25.68255 -23.91191 -22.94442 -21.61487 -20.27464 -19.91258 -18.66219 -18.22425 -18.10315 -17.16956 -17.07885 -16.82435 -16.68110 -16.20960 -15.65847 -15.50151 -15.08763 -14.97569 -14.80062 -14.31245 -13.98721 -13.44776 -13.42171 -13.33717 -13.13443 -13.01365 -13.00623 -12.67870 -12.66802 -12.39037 -12.24219 -11.87027 -11.48654 -11.35155 -11.15956 -10.52656 -10.43818 -10.18638 -9.32442 -8.98068 -8.50486 -6.21027 -0.47376 -0.01007 0.11074 0.94845 1.20992 1.32255 1.32535 1.44884 1.52777 1.62200 1.93417 2.25809 2.48151 2.68019 2.78733 2.87977 3.01162 3.24985 3.80638 3.85952 3.95725 3.96481 4.21539 4.23487 4.33203 4.46484 4.50763 4.62103 4.83235 4.92518 5.04111 5.07116 5.30020 5.55186 5.66816 5.72079 6.12061 6.13356 6.89692 6.94983 7.02638 7.26384 8.61675 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.028446 B = 0.002459 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.068118 B =11384.382549 C =12338.479202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.151 3.849 3 C -0.157 4.157 4 C 0.052 3.948 5 C 0.207 3.793 6 N -0.281 5.281 7 N -0.052 5.052 8 N -0.196 5.196 9 H 0.497 0.503 10 N -0.281 5.281 11 C -0.165 4.165 12 C 0.355 3.645 13 N -0.644 5.644 14 C 0.526 3.474 15 O -0.492 6.492 16 C -0.109 4.109 17 S -0.173 6.173 18 C -0.527 4.527 19 H 0.065 0.935 20 C 0.045 3.955 21 N -0.917 5.917 22 Si 0.913 3.087 23 H -0.263 1.263 24 H -0.260 1.260 25 H -0.236 1.236 26 N -0.507 5.507 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.107 0.893 30 H 0.166 0.834 31 H 0.171 0.829 32 H 0.438 0.562 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.932 30.817 1.970 31.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.013 3.987 3 C -0.180 4.180 4 C 0.041 3.959 5 C -0.073 4.073 6 N -0.153 5.153 7 N -0.047 5.047 8 N -0.047 5.047 9 H 0.356 0.644 10 N -0.134 5.134 11 C -0.190 4.190 12 C 0.124 3.876 13 N -0.294 5.294 14 C 0.311 3.689 15 O -0.362 6.362 16 C -0.259 4.259 17 S 0.053 5.947 18 C -0.674 4.674 19 H 0.084 0.916 20 C -0.160 4.160 21 N -0.555 5.555 22 Si 0.735 3.265 23 H -0.188 1.188 24 H -0.185 1.185 25 H -0.160 1.160 26 N -0.224 5.224 27 H 0.107 0.893 28 H 0.082 0.918 29 H 0.125 0.875 30 H 0.183 0.817 31 H 0.189 0.811 32 H 0.279 0.721 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.588 30.499 1.929 30.601 hybrid contribution 2.535 -0.451 -0.084 2.576 sum 4.123 30.048 1.845 30.386 Atomic orbital electron populations 1.20822 0.86734 1.04286 1.04100 1.21508 0.98304 0.86377 0.92547 1.22024 0.92685 1.00319 1.02946 1.17226 0.92105 0.87120 0.99482 1.23331 0.86988 0.93626 1.03338 1.76093 1.22308 0.98856 1.18068 1.78907 0.88939 1.21927 1.14905 1.47832 1.12442 1.00979 1.43464 0.64376 1.74915 1.16299 1.01357 1.20855 1.21457 1.02276 0.89115 1.06167 1.18404 0.88635 0.85638 0.94900 1.43384 1.11926 1.02250 1.71859 1.20290 0.87587 0.85128 0.75903 1.90806 1.14717 1.86225 1.44417 1.23263 1.02081 0.92619 1.07982 1.84788 1.13294 0.99704 1.96869 1.22453 0.94779 0.92662 1.57552 0.91638 1.25542 1.02842 0.94609 0.93003 1.70014 1.37298 0.99337 1.48808 0.85890 0.80345 0.79925 0.80365 1.18793 1.18451 1.16028 1.67444 1.08546 1.30969 1.15435 0.89340 0.91762 0.87481 0.81655 0.81145 0.72132 0.86204 0.86081 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.93 10.16 71.24 0.72 -1.20 16 2 C 0.15 3.60 6.77 42.46 0.29 3.89 16 3 C -0.16 -3.01 9.42 22.58 0.21 -2.80 16 4 C 0.05 1.00 5.91 -19.86 -0.12 0.88 16 5 C 0.21 3.66 7.97 137.38 1.09 4.75 16 6 N -0.28 -5.18 12.33 -52.19 -0.64 -5.82 16 7 N -0.05 -0.74 13.47 37.02 0.50 -0.24 16 8 N -0.20 -1.65 7.90 37.02 0.29 -1.36 16 9 H 0.50 -0.82 8.96 -347.53 -3.12 -3.93 16 10 N -0.28 -3.85 12.17 -52.13 -0.63 -4.49 16 11 C -0.16 -3.14 9.62 22.71 0.22 -2.92 16 12 C 0.36 9.17 7.42 132.83 0.99 10.15 16 13 N -0.64 -15.85 5.39 -308.56 -1.66 -17.51 16 14 C 0.53 18.06 7.81 87.66 0.68 18.75 16 15 O -0.49 -21.24 14.12 -3.04 -0.04 -21.29 16 16 C -0.11 -3.91 6.16 71.24 0.44 -3.47 16 17 S -0.17 -8.59 18.55 -56.49 -1.05 -9.64 16 18 C -0.53 -30.18 10.04 67.95 0.68 -29.50 16 19 H 0.07 3.93 8.03 -2.91 -0.02 3.90 16 20 C 0.05 2.65 5.50 84.86 0.47 3.12 16 21 N -0.92 -55.44 13.97 21.65 0.30 -55.14 16 22 Si 0.91 44.84 27.74 68.60 1.90 46.75 16 23 H -0.26 -12.66 7.11 99.48 0.71 -11.95 16 24 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16 25 H -0.24 -11.60 6.74 99.48 0.67 -10.93 16 26 N -0.51 -15.60 7.78 -181.35 -1.41 -17.02 16 27 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 28 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.11 1.29 8.07 -2.39 -0.02 1.28 16 30 H 0.17 2.47 7.97 -2.91 -0.02 2.45 16 31 H 0.17 2.24 7.97 -2.91 -0.02 2.22 16 32 H 0.44 6.70 8.70 -92.71 -0.81 5.89 16 33 H 0.12 3.88 8.14 -2.40 -0.02 3.86 16 34 H 0.12 3.88 8.14 -2.39 -0.02 3.86 16 35 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -81.56 331.72 0.46 -81.11 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -2.78 Total: 2.99 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: 5.68 Total: 1.65 kcal Atomic # 7 Polarization: -98.31 SS G_CDS: -3.26 Total: -101.57 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.04 Total: -21.29 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.90 Total: 46.75 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.05 Total: -9.64 kcal Total: -81.56 0.46 -81.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591858253.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.021 kcal (2) G-P(sol) polarization free energy of solvation -81.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds