Wall clock time and date at job start Tue Mar 31 2020 13:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99916 * 2 1 4 4 H 1.48510 * 109.47093 * 264.98447 * 3 2 1 5 5 H 1.48495 * 109.47117 * 24.98644 * 3 2 1 6 6 H 1.48495 * 109.47294 * 144.98956 * 3 2 1 7 7 C 1.37878 * 120.00051 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99954 * 185.55419 * 7 2 1 9 9 C 1.50697 * 120.00337 * 5.54828 * 7 2 1 10 10 O 1.42898 * 110.64025 * 59.47086 * 9 7 2 11 11 C 1.55156 * 110.72639 * 182.61487 * 9 7 2 12 12 C 1.55381 * 101.36852 * 153.94746 * 11 9 7 13 13 N 1.47426 * 104.87515 * 323.01750 * 12 11 9 14 14 C 1.34774 * 125.65206 * 204.16417 * 13 12 11 15 15 O 1.21610 * 120.00559 * 179.97438 * 14 13 12 16 16 C 1.47422 * 119.99937 * 359.96357 * 14 13 12 17 17 N 1.36070 * 126.44860 * 359.68744 * 16 14 13 18 18 C 1.29933 * 108.48010 * 179.86246 * 17 16 14 19 19 O 1.34050 * 109.24168 * 0.40303 * 18 17 16 20 20 C 1.34260 * 108.22821 * 359.74798 * 19 18 17 21 21 C 1.50699 * 126.52981 * 180.02562 * 20 19 18 22 22 F 1.39898 * 109.46794 * 269.96010 * 21 20 19 23 23 F 1.39903 * 109.46644 * 29.95532 * 21 20 19 24 24 F 1.39890 * 109.47521 * 149.95531 * 21 20 19 25 25 C 1.47026 * 108.70436 * 24.13305 * 13 12 11 26 26 H 0.96996 * 120.00252 * 359.97438 * 1 2 3 27 27 H 0.96702 * 114.00269 * 294.09235 * 10 9 7 28 28 H 1.08996 * 111.00754 * 272.12083 * 11 9 7 29 29 H 1.08998 * 110.99781 * 35.96998 * 11 9 7 30 30 H 1.08997 * 110.34660 * 204.16946 * 12 11 9 31 31 H 1.08998 * 110.44681 * 81.92034 * 12 11 9 32 32 H 1.07997 * 125.38180 * 180.11627 * 18 17 16 33 33 H 1.08994 * 109.88286 * 239.52446 * 25 13 12 34 34 H 1.08998 * 110.01209 * 118.42259 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6026 1.9852 -1.3948 5 1 1.3976 2.6809 0.5914 6 1 3.4896 1.4731 0.8032 7 6 2.0045 -1.1941 -0.0005 8 1 3.0807 -1.1963 0.0900 9 6 1.2564 -2.4961 -0.1273 10 8 0.5159 -2.5347 -1.3488 11 6 2.2308 -3.7002 -0.0378 12 6 1.2892 -4.8175 0.4906 13 7 0.3866 -4.1360 1.4362 14 6 -0.2715 -4.7226 2.4556 15 8 -0.9927 -4.0593 3.1758 16 6 -0.1172 -6.1687 2.6975 17 7 0.6460 -7.0324 1.9744 18 6 0.5291 -8.2182 2.4924 19 8 -0.3040 -8.1621 3.5410 20 6 -0.7159 -6.8921 3.6826 21 6 -1.6607 -6.3673 4.7329 22 9 -2.9747 -6.4464 4.2593 23 9 -1.5372 -7.1345 5.8963 24 9 -1.3472 -5.0341 5.0180 25 6 0.3238 -2.7100 1.0835 26 1 -0.4850 0.8400 0.0004 27 1 -0.2016 -1.8879 -1.3945 28 1 2.6303 -3.9534 -1.0198 29 1 3.0354 -3.4998 0.6697 30 1 1.8654 -5.5872 1.0041 31 1 0.7196 -5.2548 -0.3294 32 1 1.0215 -9.1093 2.1320 33 1 0.6630 -2.1049 1.9242 34 1 -0.6973 -2.4361 0.8179 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771799940.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:20 Heat of formation + Delta-G solvation = -186.669310 kcal Electronic energy + Delta-G solvation = -27954.637147 eV Core-core repulsion = 23247.529425 eV Total energy + Delta-G solvation = -4707.107722 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.082 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.25342 -47.84005 -47.64062 -43.90117 -39.43031 -37.32028 -35.33651 -34.26875 -32.25077 -31.76344 -30.16537 -27.96898 -26.75971 -25.34350 -24.00217 -22.67875 -22.15234 -20.13092 -19.56026 -18.76453 -18.65334 -18.33266 -17.32111 -17.16114 -17.00917 -16.18214 -15.57843 -15.01585 -14.84423 -14.72506 -14.61105 -14.33676 -14.22855 -14.12231 -13.81346 -13.70769 -13.24713 -13.00103 -12.93225 -12.73250 -12.18349 -11.91544 -11.71035 -11.46991 -11.24942 -11.01764 -10.69587 -10.57344 -10.47910 -10.16016 -9.77332 -9.74383 -9.33344 -8.69963 -8.34513 -7.98314 -6.29515 -4.37543 0.41772 1.47952 1.76553 2.74677 3.15942 3.23020 3.29194 3.31166 3.35769 3.48983 3.72312 4.09471 4.16210 4.26893 4.49443 4.83282 4.98585 5.05732 5.46426 5.50987 5.79787 5.86657 6.07985 6.28504 6.49857 6.73573 6.83078 6.84200 6.96914 7.20204 7.32299 7.71727 7.96898 8.04703 8.42482 8.65724 9.26308 9.34947 10.78395 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.021483 B = 0.003934 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.035693 B = 7116.290053 C = 7890.973495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.072 3.928 3 Si 0.903 3.097 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.538 4.538 8 H 0.067 0.933 9 C 0.248 3.752 10 O -0.582 6.582 11 C -0.119 4.119 12 C 0.102 3.898 13 N -0.583 5.583 14 C 0.582 3.418 15 O -0.523 6.523 16 C 0.039 3.961 17 N -0.458 5.458 18 C 0.213 3.787 19 O -0.175 6.175 20 C -0.098 4.098 21 C 0.565 3.435 22 F -0.161 7.161 23 F -0.172 7.172 24 F -0.121 7.121 25 C 0.102 3.898 26 H 0.270 0.730 27 H 0.380 0.620 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.268 0.732 33 H 0.073 0.927 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.089 -16.634 5.930 17.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.576 4.576 8 H 0.085 0.915 9 C 0.207 3.793 10 O -0.390 6.390 11 C -0.157 4.157 12 C -0.021 4.021 13 N -0.314 5.314 14 C 0.366 3.634 15 O -0.401 6.401 16 C -0.084 4.084 17 N -0.187 5.187 18 C -0.014 4.014 19 O -0.061 6.061 20 C -0.155 4.155 21 C 0.510 3.490 22 F -0.142 7.142 23 F -0.153 7.153 24 F -0.102 7.102 25 C -0.018 4.018 26 H 0.080 0.920 27 H 0.230 0.770 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.084 0.916 32 H 0.283 0.717 33 H 0.091 0.909 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.090 -16.493 5.737 17.463 hybrid contribution -0.414 0.986 0.717 1.288 sum -0.325 -15.507 6.454 16.799 Atomic orbital electron populations 1.69726 1.06011 1.27986 1.49442 1.25062 0.95029 0.99769 0.93289 0.86420 0.79727 0.82341 0.78431 1.20284 1.21083 1.19777 1.21482 0.94063 0.90199 1.51879 0.91492 1.19525 0.86913 0.92328 0.80489 1.86140 1.50660 1.62474 1.39755 1.22870 0.97243 0.94678 1.00907 1.22635 0.91795 0.95711 0.91960 1.48636 1.43226 1.12248 1.27312 1.16389 0.82001 0.83117 0.81867 1.90922 1.39281 1.62992 1.46858 1.22095 0.96462 0.96887 0.92969 1.71161 1.20407 1.00148 1.26961 1.28591 0.90537 0.99181 0.83114 1.84347 1.49820 1.27214 1.44700 1.23112 1.05722 0.83893 1.02780 1.16461 0.77670 0.76991 0.77885 1.93274 1.36655 1.96106 1.88191 1.93241 1.95758 1.75698 1.50606 1.93479 1.92363 1.31379 1.92952 1.23220 1.02125 0.76094 1.00386 0.91980 0.77035 0.90378 0.90541 0.89775 0.91609 0.71673 0.90861 0.91089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.54 11.03 55.43 0.61 -22.93 16 2 C 0.07 1.86 5.29 -17.82 -0.09 1.77 16 3 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 7 C -0.54 -13.90 8.11 -34.44 -0.28 -14.17 16 8 H 0.07 1.70 7.78 -52.49 -0.41 1.29 16 9 C 0.25 5.90 0.84 -89.94 -0.08 5.82 16 10 O -0.58 -14.35 13.07 -35.23 -0.46 -14.81 16 11 C -0.12 -2.35 6.26 -24.33 -0.15 -2.51 16 12 C 0.10 1.84 6.14 -2.27 -0.01 1.82 16 13 N -0.58 -12.11 3.33 -171.48 -0.57 -12.68 16 14 C 0.58 11.71 7.79 -12.52 -0.10 11.62 16 15 O -0.52 -11.74 13.48 5.27 0.07 -11.67 16 16 C 0.04 0.62 6.78 -83.02 -0.56 0.06 16 17 N -0.46 -6.00 8.44 -11.48 -0.10 -6.10 16 18 C 0.21 1.81 13.19 51.96 0.69 2.50 16 19 O -0.17 -1.90 10.72 6.50 0.07 -1.83 16 20 C -0.10 -1.39 6.75 -35.08 -0.24 -1.62 16 21 C 0.57 8.20 3.34 36.01 0.12 8.32 16 22 F -0.16 -2.36 17.30 2.25 0.04 -2.32 16 23 F -0.17 -2.20 17.30 2.25 0.04 -2.16 16 24 F -0.12 -2.08 13.49 2.25 0.03 -2.05 16 25 C 0.10 2.44 5.24 -3.06 -0.02 2.42 16 26 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 27 H 0.38 9.52 7.49 45.56 0.34 9.87 16 28 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 29 H 0.08 1.46 8.04 -51.93 -0.42 1.04 16 30 H 0.08 1.35 6.16 -51.93 -0.32 1.03 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.27 0.54 8.06 -52.49 -0.42 0.12 16 33 H 0.07 1.89 7.81 -51.93 -0.41 1.49 16 34 H 0.07 1.83 7.84 -51.93 -0.41 1.42 16 LS Contribution 306.52 15.07 4.62 4.62 Total: -1.00 -30.12 306.52 -3.41 -33.53 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -2.02 Total: 7.07 kcal Atomic # 6 Polarization: 16.75 SS G_CDS: -0.72 Total: 16.03 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: -0.06 Total: -41.71 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -0.32 Total: -28.30 kcal Atomic # 9 Polarization: -6.64 SS G_CDS: 0.11 Total: -6.53 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.12 -3.41 -33.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771799940.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.137 kcal (2) G-P(sol) polarization free energy of solvation -30.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds