Wall clock time and date at job start Tue Mar 31 2020 12:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47291 * 2 1 4 4 C 1.36942 * 119.99911 * 97.86969 * 3 2 1 5 5 H 1.07999 * 119.99773 * 159.49225 * 4 3 2 6 6 C 1.38978 * 120.00083 * 339.76235 * 4 3 2 7 7 N 1.31409 * 120.00112 * 358.36013 * 6 4 3 8 8 Si 1.86798 * 119.99743 * 178.35967 * 6 4 3 9 9 H 1.48502 * 109.47371 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47095 * 120.00305 * 8 6 4 11 11 H 1.48498 * 109.47081 * 239.99852 * 8 6 4 12 12 C 1.34780 * 119.99740 * 277.86704 * 3 2 1 13 13 O 1.21664 * 119.99522 * 177.12612 * 12 3 2 14 14 C 1.47199 * 119.99984 * 357.13198 * 12 3 2 15 15 C 1.36292 * 122.56273 * 188.21944 * 14 12 3 16 16 S 1.71007 * 109.01675 * 180.02562 * 15 14 12 17 17 C 1.75967 * 90.64763 * 359.97438 * 16 15 14 18 18 C 1.47854 * 125.22118 * 179.97438 * 17 16 15 19 19 C 1.39542 * 120.15940 * 179.69986 * 18 17 16 20 20 C 1.37936 * 119.88438 * 179.74782 * 19 18 17 21 21 C 1.38397 * 120.19669 * 0.52579 * 20 19 18 22 22 C 1.38262 * 120.31652 * 359.74934 * 21 20 19 23 23 C 1.38258 * 120.11180 * 359.97337 * 22 21 20 24 24 F 1.35104 * 120.10095 * 180.02562 * 23 22 21 25 25 N 1.29807 * 109.56211 * 359.73876 * 17 16 15 26 26 H 1.08992 * 109.47342 * 59.99825 * 1 2 3 27 27 H 1.08998 * 109.46680 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46415 * 299.99970 * 1 2 3 29 29 H 1.09004 * 109.46774 * 239.99833 * 2 1 3 30 30 H 1.09000 * 109.47288 * 119.99888 * 2 1 3 31 31 H 0.96998 * 119.99696 * 179.97438 * 7 6 4 32 32 H 1.08000 * 125.49306 * 359.96236 * 15 14 12 33 33 H 1.08004 * 120.05346 * 359.97438 * 19 18 17 34 34 H 1.08000 * 119.90465 * 180.27441 * 20 19 18 35 35 H 1.08004 * 119.84134 * 179.76663 * 21 20 19 36 36 H 1.07994 * 119.94450 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3997 1.9726 1.1748 5 1 3.0525 2.8329 1.1593 6 6 1.9513 1.4624 2.3872 7 7 1.1355 0.4323 2.4052 8 14 2.5082 2.2409 3.9913 9 1 3.4179 3.3779 3.7002 10 1 1.3240 2.7340 4.7396 11 1 3.2248 1.2299 4.8096 12 6 2.0924 2.0698 -1.1563 13 8 2.4482 3.2332 -1.1497 14 6 1.7427 1.4142 -2.4270 15 6 1.9525 2.0028 -3.6382 16 16 1.4229 0.9435 -4.8717 17 6 0.9431 -0.2486 -3.6696 18 6 0.3398 -1.5651 -3.9678 19 6 0.0043 -2.4340 -2.9287 20 6 -0.5631 -3.6587 -3.2130 21 6 -0.7906 -4.0325 -4.5260 22 6 -0.4562 -3.1803 -5.5622 23 6 0.1080 -1.9474 -5.2917 24 9 0.4342 -1.1147 -6.3043 25 7 1.2047 0.2030 -2.4811 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 0.8229 0.0760 3.2515 32 1 2.3828 2.9811 -3.7938 33 1 0.1854 -2.1466 -1.9035 34 1 -0.8269 -4.3297 -2.4089 35 1 -1.2317 -4.9943 -4.7423 36 1 -0.6359 -3.4783 -6.5845 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049426270.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:57 Heat of formation + Delta-G solvation = 24.907365 kcal Electronic energy + Delta-G solvation = -24368.006537 eV Core-core repulsion = 20667.055868 eV Total energy + Delta-G solvation = -3700.950668 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.074 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.14117 -39.94382 -38.88464 -37.42378 -35.09384 -32.37703 -31.70572 -30.73005 -29.31323 -29.03055 -26.05670 -24.77266 -23.19636 -22.71696 -21.94241 -20.35888 -18.89519 -18.11947 -17.60222 -16.73968 -16.35042 -16.18486 -15.87931 -15.36122 -14.96262 -14.50812 -14.42705 -14.10709 -13.84314 -13.50395 -13.27120 -13.12801 -12.69580 -12.57262 -12.41026 -11.87375 -11.72802 -11.45940 -11.26058 -11.14697 -11.03822 -10.70610 -10.35831 -10.11329 -10.00852 -9.83362 -9.18847 -9.09178 -8.95260 -8.76417 -8.51114 -8.01852 -7.61281 -6.27712 -3.88808 0.31494 1.03185 1.40153 1.52781 2.02499 2.69925 3.17100 3.23032 3.30151 3.54042 3.87275 4.06436 4.12107 4.36764 4.55540 4.83001 4.90500 5.01726 5.15749 5.19083 5.29868 5.64700 5.71579 5.83926 5.85149 5.93526 6.16246 6.24435 6.35404 6.65112 6.70266 6.86296 6.95144 7.14195 7.40424 7.58905 7.84826 7.89240 8.12586 8.53851 9.13253 9.39598 9.97761 10.61886 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.018721 B = 0.004310 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.258422 B = 6494.285666 C = 7891.972910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.117 3.883 3 N -0.411 5.411 4 C -0.292 4.292 5 H 0.102 0.898 6 C 0.028 3.972 7 N -0.864 5.864 8 Si 0.932 3.068 9 H -0.268 1.268 10 H -0.280 1.280 11 H -0.280 1.280 12 C 0.493 3.507 13 O -0.594 6.594 14 C 0.049 3.951 15 C -0.243 4.243 16 S 0.159 5.841 17 C 0.056 3.944 18 C -0.040 4.040 19 C -0.049 4.049 20 C -0.128 4.128 21 C -0.086 4.086 22 C -0.153 4.153 23 C 0.105 3.895 24 F -0.129 7.129 25 N -0.400 5.400 26 H 0.024 0.976 27 H 0.031 0.969 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.102 0.898 31 H 0.267 0.733 32 H 0.183 0.817 33 H 0.151 0.849 34 H 0.136 0.864 35 H 0.134 0.866 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.497 -11.318 -13.425 18.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.006 4.006 3 N -0.126 5.126 4 C -0.421 4.421 5 H 0.120 0.880 6 C -0.176 4.176 7 N -0.504 5.504 8 Si 0.759 3.241 9 H -0.192 1.192 10 H -0.206 1.206 11 H -0.206 1.206 12 C 0.280 3.720 13 O -0.481 6.481 14 C -0.087 4.087 15 C -0.386 4.386 16 S 0.416 5.584 17 C -0.219 4.219 18 C -0.045 4.045 19 C -0.070 4.070 20 C -0.146 4.146 21 C -0.105 4.105 22 C -0.172 4.172 23 C 0.084 3.916 24 F -0.107 7.107 25 N -0.116 5.116 26 H 0.043 0.957 27 H 0.050 0.950 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.120 0.880 31 H 0.078 0.922 32 H 0.201 0.799 33 H 0.169 0.831 34 H 0.154 0.846 35 H 0.152 0.848 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.497 -11.031 -13.885 18.294 hybrid contribution 0.385 0.902 1.376 1.690 sum -4.112 -10.129 -12.508 16.612 Atomic orbital electron populations 1.21898 0.96822 0.98969 1.00585 1.21870 0.94695 0.82690 1.01376 1.43745 1.51846 1.11770 1.05194 1.19886 1.26607 1.13399 0.82208 0.88013 1.25425 0.95760 0.96560 0.99823 1.70101 1.31062 1.22719 1.26501 0.85754 0.78542 0.79103 0.80704 1.19174 1.20570 1.20608 1.16877 0.86983 0.85958 0.82221 1.90623 1.55172 1.16216 1.86066 1.20988 1.01672 0.89811 0.96184 1.26819 1.08949 1.06901 0.95889 1.83811 1.55179 1.08610 1.10779 1.25752 1.06155 0.98724 0.91243 1.17846 1.02769 0.91883 0.92001 1.21415 0.93927 0.91928 0.99758 1.21246 0.99731 0.96650 0.96991 1.21136 0.97970 0.99252 0.92126 1.20986 1.02275 0.92787 1.01115 1.17728 1.00967 0.89698 0.83228 1.91462 1.90268 1.70546 1.58424 1.67601 1.11731 1.11365 1.20889 0.95655 0.95034 0.90697 0.92261 0.87975 0.92244 0.79942 0.83125 0.84636 0.84808 0.84362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.78 8.94 37.16 0.33 -2.45 16 2 C 0.12 2.77 4.86 -4.04 -0.02 2.75 16 3 N -0.41 -11.01 2.64 -116.10 -0.31 -11.32 16 4 C -0.29 -8.19 9.35 -15.00 -0.14 -8.33 16 5 H 0.10 2.97 7.37 -52.49 -0.39 2.58 16 6 C 0.03 0.71 5.30 -17.46 -0.09 0.62 16 7 N -0.86 -22.00 7.94 55.50 0.44 -21.56 16 8 Si 0.93 20.45 29.55 -169.99 -5.02 15.43 16 9 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 10 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 12 C 0.49 13.11 7.52 -12.62 -0.09 13.01 16 13 O -0.59 -17.35 16.39 5.22 0.09 -17.26 16 14 C 0.05 1.09 6.31 -84.58 -0.53 0.55 16 15 C -0.24 -4.58 10.63 30.03 0.32 -4.26 16 16 S 0.16 2.42 20.72 -107.50 -2.23 0.20 16 17 C 0.06 0.94 7.31 -14.47 -0.11 0.83 16 18 C -0.04 -0.57 5.88 -104.92 -0.62 -1.19 16 19 C -0.05 -0.62 9.67 -39.21 -0.38 -1.00 16 20 C -0.13 -1.22 10.03 -39.63 -0.40 -1.61 16 21 C -0.09 -0.70 10.04 -39.51 -0.40 -1.09 16 22 C -0.15 -1.41 10.01 -39.57 -0.40 -1.81 16 23 C 0.11 1.28 7.28 -39.01 -0.28 1.00 16 24 F -0.13 -1.61 14.66 2.25 0.03 -1.58 16 25 N -0.40 -7.94 4.55 -7.91 -0.04 -7.98 16 26 H 0.02 0.56 6.62 -51.93 -0.34 0.22 16 27 H 0.03 0.60 7.68 -51.93 -0.40 0.20 16 28 H 0.07 1.87 6.33 -51.93 -0.33 1.54 16 29 H 0.06 1.33 5.45 -51.93 -0.28 1.05 16 30 H 0.10 2.58 5.81 -51.93 -0.30 2.27 16 31 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 32 H 0.18 3.27 8.03 -52.49 -0.42 2.85 16 33 H 0.15 2.10 7.26 -52.48 -0.38 1.72 16 34 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 36 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 317.96 15.07 4.79 4.79 Total: -1.00 -30.96 317.96 -8.30 -39.26 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -3.25 Total: 3.00 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -2.81 Total: -2.98 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: 0.10 Total: -40.85 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: 0.09 Total: -17.26 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.03 Total: -1.58 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: 2.42 SS G_CDS: -2.23 Total: 0.20 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.96 -8.30 -39.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049426270.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.163 kcal (2) G-P(sol) polarization free energy of solvation -30.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds