Wall clock time and date at job start Tue Mar 31 2020 12:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47291 * 2 1 4 4 C 1.36942 * 119.99911 * 97.86969 * 3 2 1 5 5 H 1.07999 * 119.99773 * 159.49225 * 4 3 2 6 6 C 1.38978 * 120.00083 * 339.76235 * 4 3 2 7 7 N 1.31409 * 120.00112 * 358.36013 * 6 4 3 8 8 Si 1.86798 * 119.99743 * 178.35967 * 6 4 3 9 9 H 1.48502 * 109.47371 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47095 * 120.00305 * 8 6 4 11 11 H 1.48498 * 109.47081 * 239.99852 * 8 6 4 12 12 C 1.34780 * 119.99740 * 277.86704 * 3 2 1 13 13 O 1.21664 * 119.99522 * 177.12612 * 12 3 2 14 14 C 1.47199 * 119.99984 * 357.13198 * 12 3 2 15 15 C 1.36292 * 122.56273 * 188.21944 * 14 12 3 16 16 S 1.71007 * 109.01675 * 180.02562 * 15 14 12 17 17 C 1.75967 * 90.64763 * 359.97438 * 16 15 14 18 18 C 1.47854 * 125.22118 * 179.97438 * 17 16 15 19 19 C 1.39542 * 120.15940 * 179.69986 * 18 17 16 20 20 C 1.37936 * 119.88438 * 179.74782 * 19 18 17 21 21 C 1.38397 * 120.19669 * 0.52579 * 20 19 18 22 22 C 1.38262 * 120.31652 * 359.74934 * 21 20 19 23 23 C 1.38258 * 120.11180 * 359.97337 * 22 21 20 24 24 F 1.35104 * 120.10095 * 180.02562 * 23 22 21 25 25 N 1.29807 * 109.56211 * 359.73876 * 17 16 15 26 26 H 1.08992 * 109.47342 * 59.99825 * 1 2 3 27 27 H 1.08998 * 109.46680 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46415 * 299.99970 * 1 2 3 29 29 H 1.09004 * 109.46774 * 239.99833 * 2 1 3 30 30 H 1.09000 * 109.47288 * 119.99888 * 2 1 3 31 31 H 0.96998 * 119.99696 * 179.97438 * 7 6 4 32 32 H 1.08000 * 125.49306 * 359.96236 * 15 14 12 33 33 H 1.08004 * 120.05346 * 359.97438 * 19 18 17 34 34 H 1.08000 * 119.90465 * 180.27441 * 20 19 18 35 35 H 1.08004 * 119.84134 * 179.76663 * 21 20 19 36 36 H 1.07994 * 119.94450 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3997 1.9726 1.1748 5 1 3.0525 2.8329 1.1593 6 6 1.9513 1.4624 2.3872 7 7 1.1355 0.4323 2.4052 8 14 2.5082 2.2409 3.9913 9 1 3.4179 3.3779 3.7002 10 1 1.3240 2.7340 4.7396 11 1 3.2248 1.2299 4.8096 12 6 2.0924 2.0698 -1.1563 13 8 2.4482 3.2332 -1.1497 14 6 1.7427 1.4142 -2.4270 15 6 1.9525 2.0028 -3.6382 16 16 1.4229 0.9435 -4.8717 17 6 0.9431 -0.2486 -3.6696 18 6 0.3398 -1.5651 -3.9678 19 6 0.0043 -2.4340 -2.9287 20 6 -0.5631 -3.6587 -3.2130 21 6 -0.7906 -4.0325 -4.5260 22 6 -0.4562 -3.1803 -5.5622 23 6 0.1080 -1.9474 -5.2917 24 9 0.4342 -1.1147 -6.3043 25 7 1.2047 0.2030 -2.4811 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 0.8229 0.0760 3.2515 32 1 2.3828 2.9811 -3.7938 33 1 0.1854 -2.1466 -1.9035 34 1 -0.8269 -4.3297 -2.4089 35 1 -1.2317 -4.9943 -4.7423 36 1 -0.6359 -3.4783 -6.5845 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049426270.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:56 Heat of formation + Delta-G solvation = 7.647128 kcal Electronic energy + Delta-G solvation = -24368.754997 eV Core-core repulsion = 20667.055868 eV Total energy + Delta-G solvation = -3701.699128 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.074 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.07331 -41.51177 -39.96252 -39.06216 -37.12622 -33.79872 -33.36538 -31.57989 -31.20505 -30.34859 -27.83312 -26.21605 -24.63643 -23.86960 -23.50228 -21.73205 -20.38646 -19.68865 -18.73585 -18.58126 -17.54342 -17.17196 -17.03232 -16.83839 -16.62566 -16.16902 -15.82145 -15.41261 -15.19758 -14.92307 -14.66910 -14.52131 -14.25686 -14.17544 -13.60116 -13.35822 -13.15345 -12.87345 -12.81833 -12.69558 -12.60937 -12.22876 -12.08740 -11.97786 -11.79576 -11.05821 -10.89361 -10.72571 -10.49756 -10.25211 -9.81342 -9.64870 -9.21265 -8.25950 -5.99310 -0.85860 0.16954 0.20861 0.27168 0.58886 1.19947 1.40605 1.46761 1.54962 2.24551 2.42653 2.70284 2.72511 3.10130 3.14190 3.16578 3.72397 3.86838 4.10562 4.15959 4.30260 4.35888 4.38260 4.63160 4.78786 4.92418 5.01326 5.06908 5.10364 5.16406 5.30357 5.36439 5.36996 5.48863 5.59927 5.88222 5.93200 6.08405 6.38037 6.59981 7.09021 7.38865 7.95707 8.61941 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.018721 B = 0.004310 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.258422 B = 6494.285666 C = 7891.972910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.126 3.874 3 N -0.423 5.423 4 C -0.343 4.343 5 H 0.074 0.926 6 C 0.001 3.999 7 N -0.868 5.868 8 Si 0.998 3.002 9 H -0.277 1.277 10 H -0.271 1.271 11 H -0.262 1.262 12 C 0.478 3.522 13 O -0.639 6.639 14 C 0.019 3.981 15 C -0.254 4.254 16 S 0.246 5.754 17 C 0.056 3.944 18 C -0.074 4.074 19 C -0.064 4.064 20 C -0.123 4.123 21 C -0.064 4.064 22 C -0.144 4.144 23 C 0.096 3.904 24 F -0.134 7.134 25 N -0.427 5.427 26 H 0.018 0.982 27 H 0.060 0.940 28 H 0.046 0.954 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.275 0.725 32 H 0.184 0.816 33 H 0.130 0.870 34 H 0.161 0.839 35 H 0.177 0.823 36 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.088 -14.657 -15.098 21.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.004 3.996 3 N -0.137 5.137 4 C -0.471 4.471 5 H 0.092 0.908 6 C -0.202 4.202 7 N -0.506 5.506 8 Si 0.821 3.179 9 H -0.202 1.202 10 H -0.197 1.197 11 H -0.187 1.187 12 C 0.266 3.734 13 O -0.529 6.529 14 C -0.117 4.117 15 C -0.397 4.397 16 S 0.506 5.494 17 C -0.218 4.218 18 C -0.079 4.079 19 C -0.085 4.085 20 C -0.141 4.141 21 C -0.083 4.083 22 C -0.162 4.162 23 C 0.074 3.926 24 F -0.113 7.113 25 N -0.143 5.143 26 H 0.037 0.963 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.202 0.798 33 H 0.148 0.852 34 H 0.179 0.821 35 H 0.195 0.805 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -6.107 -14.414 -15.574 22.082 hybrid contribution 0.774 1.739 1.692 2.546 sum -5.334 -12.676 -13.882 19.541 Atomic orbital electron populations 1.21660 0.95712 1.00205 0.98675 1.21842 0.95415 0.81289 1.01052 1.43973 1.51890 1.12714 1.05135 1.19821 1.28989 1.14394 0.83936 0.90835 1.26162 0.95256 0.96718 1.02060 1.70181 1.30228 1.22465 1.27739 0.84818 0.78200 0.78228 0.76673 1.20232 1.19655 1.18683 1.17551 0.86293 0.85839 0.83756 1.90547 1.57024 1.18104 1.87188 1.20454 1.04714 0.91550 0.94967 1.27041 1.08254 1.07672 0.96728 1.83444 1.52803 1.05696 1.07499 1.26331 1.04471 0.99982 0.91048 1.17949 1.05271 0.91138 0.93532 1.21392 0.95205 0.93360 0.98586 1.21575 0.98288 0.95436 0.98789 1.21657 0.95465 1.00286 0.90873 1.21414 1.00437 0.91243 1.03140 1.17958 1.01665 0.90785 0.82188 1.91434 1.90450 1.70972 1.58439 1.67436 1.13362 1.10713 1.22782 0.96308 0.92115 0.93560 0.90949 0.89695 0.91407 0.79848 0.85188 0.82120 0.80534 0.81258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.78 8.94 71.98 0.64 -4.14 16 2 C 0.13 6.25 4.86 86.38 0.42 6.67 16 3 N -0.42 -24.11 2.64 -639.47 -1.69 -25.80 16 4 C -0.34 -20.44 9.35 84.07 0.79 -19.66 16 5 H 0.07 4.66 7.37 -2.91 -0.02 4.64 16 6 C 0.00 0.05 5.30 84.93 0.45 0.50 16 7 N -0.87 -44.97 7.94 21.67 0.17 -44.80 16 8 Si 1.00 42.83 29.55 68.60 2.03 44.86 16 9 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 10 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 11 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 12 C 0.48 27.15 7.52 86.60 0.65 27.80 16 13 O -0.64 -40.15 16.39 -4.24 -0.07 -40.21 16 14 C 0.02 0.87 6.31 40.92 0.26 1.13 16 15 C -0.25 -9.84 10.63 67.37 0.72 -9.13 16 16 S 0.25 7.27 20.72 -56.49 -1.17 6.10 16 17 C 0.06 1.88 7.31 87.54 0.64 2.52 16 18 C -0.07 -1.98 5.88 -20.05 -0.12 -2.10 16 19 C -0.06 -1.52 9.67 22.51 0.22 -1.31 16 20 C -0.12 -1.86 10.03 22.24 0.22 -1.64 16 21 C -0.06 -0.69 10.04 22.31 0.22 -0.46 16 22 C -0.14 -1.96 10.01 22.28 0.22 -1.74 16 23 C 0.10 2.04 7.28 22.64 0.16 2.21 16 24 F -0.13 -3.00 14.66 44.97 0.66 -2.34 16 25 N -0.43 -17.42 4.55 -178.93 -0.81 -18.24 16 26 H 0.02 0.85 6.62 -2.39 -0.02 0.84 16 27 H 0.06 2.34 7.68 -2.39 -0.02 2.33 16 28 H 0.05 2.37 6.33 -2.39 -0.02 2.35 16 29 H 0.07 3.39 5.45 -2.38 -0.01 3.37 16 30 H 0.09 4.44 5.81 -2.39 -0.01 4.43 16 31 H 0.28 13.14 8.31 -92.71 -0.77 12.37 16 32 H 0.18 6.87 8.03 -2.91 -0.02 6.85 16 33 H 0.13 3.60 7.26 -2.91 -0.02 3.58 16 34 H 0.16 1.61 8.06 -2.91 -0.02 1.58 16 35 H 0.18 0.50 8.06 -2.91 -0.02 0.47 16 36 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 Total: -1.00 -73.31 317.96 5.75 -67.55 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: 1.14 Total: 12.21 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: 5.50 Total: 0.66 kcal Atomic # 7 Polarization: -86.50 SS G_CDS: -2.33 Total: -88.84 kcal Atomic # 8 Polarization: -40.15 SS G_CDS: -0.07 Total: -40.21 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.66 Total: -2.34 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Atomic # 16 Polarization: 7.27 SS G_CDS: -1.17 Total: 6.10 kcal Total: -73.31 5.75 -67.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049426270.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.200 kcal (2) G-P(sol) polarization free energy of solvation -73.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds