Wall clock time and date at job start Tue Mar 31 2020 12:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99787 * 2 1 4 4 H 1.48497 * 109.47507 * 270.00123 * 3 2 1 5 5 H 1.48504 * 109.47388 * 30.00375 * 3 2 1 6 6 H 1.48505 * 109.47259 * 150.00063 * 3 2 1 7 7 C 1.37873 * 120.00302 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99707 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00284 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47290 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47180 * 179.97438 * 10 9 7 12 12 S 1.81404 * 109.47336 * 180.02562 * 11 10 9 13 13 O 1.42099 * 109.46875 * 296.39099 * 12 11 10 14 14 C 1.81398 * 103.00020 * 179.97438 * 12 11 10 15 15 C 1.50706 * 109.46789 * 179.97438 * 14 12 11 16 16 C 1.38253 * 120.00297 * 269.95290 * 15 14 12 17 17 C 1.38204 * 119.99863 * 179.97438 * 16 15 14 18 18 C 1.38261 * 120.00515 * 0.07163 * 17 16 15 19 19 C 1.38208 * 119.99533 * 359.95684 * 18 17 16 20 20 C 1.50701 * 119.99804 * 180.02562 * 19 18 17 21 21 F 1.39904 * 109.46886 * 270.01653 * 20 19 18 22 22 F 1.39894 * 109.47439 * 30.01878 * 20 19 18 23 23 F 1.39902 * 109.47089 * 150.01960 * 20 19 18 24 24 C 1.38220 * 119.99654 * 90.00482 * 15 14 12 25 25 H 0.97001 * 120.00226 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.47239 * 59.99654 * 9 7 2 27 27 H 1.09000 * 109.47092 * 300.00388 * 9 7 2 28 28 H 1.09006 * 109.47069 * 59.99787 * 10 9 7 29 29 H 1.08998 * 109.47059 * 300.00384 * 10 9 7 30 30 H 1.09006 * 109.47168 * 60.00001 * 11 10 9 31 31 H 1.08998 * 109.47563 * 300.00229 * 11 10 9 32 32 H 1.08997 * 109.46937 * 60.00060 * 14 12 11 33 33 H 1.08996 * 109.47271 * 299.99678 * 14 12 11 34 34 H 1.08005 * 119.99943 * 0.04949 * 16 15 14 35 35 H 1.08004 * 120.00227 * 180.02562 * 17 16 15 36 36 H 1.07992 * 120.00025 * 179.97438 * 18 17 16 37 37 H 1.08000 * 119.99660 * 0.27001 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6364 -0.0001 11 6 5.5515 -2.6364 -0.0001 12 16 6.1563 -4.3467 -0.0010 13 8 5.7528 -4.9923 1.1988 14 6 7.9587 -4.1421 -0.0018 15 6 8.6180 -5.4973 -0.0020 16 6 8.9218 -6.1185 1.1952 17 6 9.5259 -7.3615 1.1950 18 6 9.8279 -7.9832 -0.0025 19 6 9.5247 -7.3620 -1.1993 20 6 9.8532 -8.0399 -2.5045 21 9 11.1412 -7.6731 -2.9092 22 9 9.7945 -9.4276 -2.3370 23 9 8.9290 -7.6483 -3.4790 24 6 8.9199 -6.1188 -1.1991 25 1 -0.4850 0.8400 0.0004 26 1 3.8746 -0.6807 0.8905 27 1 3.8752 -0.6795 -0.8894 28 1 3.6586 -3.1501 -0.8903 29 1 3.6579 -3.1505 0.8896 30 1 5.9149 -2.1226 0.8899 31 1 5.9149 -2.1225 -0.8900 32 1 8.2622 -3.5909 0.8883 33 1 8.2614 -3.5903 -0.8917 34 1 8.6859 -5.6328 2.1307 35 1 9.7629 -7.8470 2.1302 36 1 10.3003 -8.9543 -0.0026 37 1 8.6873 -5.6312 -2.1343 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078700443.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:48 Heat of formation + Delta-G solvation = -179.417657 kcal Electronic energy + Delta-G solvation = -23396.593429 eV Core-core repulsion = 19236.093377 eV Total energy + Delta-G solvation = -4160.500052 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.080 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.46751 -47.97946 -47.93223 -39.86875 -35.63592 -34.61388 -33.60513 -32.13610 -32.11600 -28.27474 -27.56461 -26.39640 -23.39683 -22.76180 -21.80482 -20.24920 -18.80443 -18.69680 -18.47921 -17.45339 -16.72558 -16.68384 -15.86415 -15.51722 -15.11604 -14.98146 -14.80036 -14.69215 -14.44094 -14.36050 -14.18096 -14.08376 -14.00316 -13.53385 -13.45628 -13.10511 -12.96889 -12.75954 -12.28873 -12.17538 -11.78664 -11.69400 -11.55692 -11.21427 -10.87992 -10.70721 -10.01811 -9.88074 -9.76792 -9.60392 -9.24603 -9.01598 -8.57077 -8.12414 -6.07016 -4.05552 0.49580 0.72059 1.58714 2.32077 2.63783 3.12130 3.27020 3.34929 3.36787 3.37778 3.65351 3.80212 4.09773 4.24342 4.40085 4.41826 4.57031 4.76540 4.82751 5.01950 5.19119 5.24644 5.29654 5.35878 5.40278 5.53873 5.70871 5.86738 5.99641 6.01791 6.31656 6.32694 6.44686 6.78863 7.21093 7.34390 7.74960 8.50405 8.97958 9.54953 11.06445 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.025368 B = 0.002335 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.472839 B =11990.513523 C =12358.395925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.524 4.524 8 H 0.073 0.927 9 C -0.008 4.008 10 C -0.086 4.086 11 C -0.439 4.439 12 S 1.237 4.763 13 O -0.837 6.837 14 C -0.420 4.420 15 C -0.058 4.058 16 C -0.080 4.080 17 C -0.114 4.114 18 C -0.076 4.076 19 C -0.181 4.181 20 C 0.510 3.490 21 F -0.178 7.178 22 F -0.177 7.177 23 F -0.174 7.174 24 C -0.069 4.069 25 H 0.263 0.737 26 H 0.014 0.986 27 H 0.015 0.985 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.115 0.885 32 H 0.098 0.902 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.910 -15.690 -4.946 29.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.192 1.192 7 C -0.562 4.562 8 H 0.091 0.909 9 C -0.047 4.047 10 C -0.125 4.125 11 C -0.578 4.578 12 S 1.437 4.563 13 O -0.832 6.832 14 C -0.554 4.554 15 C -0.060 4.060 16 C -0.099 4.099 17 C -0.132 4.132 18 C -0.095 4.095 19 C -0.182 4.182 20 C 0.455 3.545 21 F -0.159 7.159 22 F -0.159 7.159 23 F -0.155 7.155 24 C -0.088 4.088 25 H 0.073 0.927 26 H 0.032 0.968 27 H 0.033 0.967 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.133 0.867 32 H 0.117 0.883 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 24.254 -16.427 -4.953 29.709 hybrid contribution 1.150 2.102 1.645 2.906 sum 25.404 -14.325 -3.308 29.351 Atomic orbital electron populations 1.69913 1.06288 1.26915 1.51008 1.25036 0.94743 0.99173 0.94562 0.86771 0.80294 0.83648 0.78504 1.20166 1.21374 1.19193 1.21159 0.89446 0.94608 1.50944 0.90875 1.19567 0.97123 0.91630 0.96345 1.21138 0.88102 1.01237 1.02007 1.27730 1.06098 1.16752 1.07184 1.70881 0.83940 0.88954 1.12522 1.93127 1.74646 1.64669 1.50800 1.26870 1.21753 0.98074 1.08665 1.19110 0.98950 0.95007 0.92886 1.21387 0.95236 0.95006 0.98232 1.21142 0.98932 0.95111 0.98045 1.20948 0.97630 0.99748 0.91130 1.19920 1.08076 0.98072 0.92172 1.18274 0.74526 0.76653 0.84999 1.93229 1.39475 1.91382 1.91817 1.93191 1.96098 1.31037 1.95550 1.93210 1.66173 1.90638 1.65509 1.20863 0.95923 0.93053 0.98992 0.92691 0.96816 0.96700 0.91449 0.92184 0.89982 0.86705 0.88319 0.85216 0.85144 0.84632 0.84634 0.83763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.85 13.96 55.43 0.77 -27.08 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 7 C -0.52 -14.91 9.66 -34.44 -0.33 -15.25 16 8 H 0.07 2.23 7.99 -52.48 -0.42 1.81 16 9 C -0.01 -0.19 4.04 -27.88 -0.11 -0.30 16 10 C -0.09 -1.63 5.16 -26.73 -0.14 -1.77 16 11 C -0.44 -6.05 5.92 37.15 0.22 -5.83 16 12 S 1.24 14.03 13.14 -107.50 -1.41 12.62 16 13 O -0.84 -14.74 18.14 -35.23 -0.64 -15.38 16 14 C -0.42 -3.57 6.05 36.01 0.22 -3.35 16 15 C -0.06 -0.54 5.14 -104.62 -0.54 -1.07 16 16 C -0.08 -0.76 9.70 -39.59 -0.38 -1.14 16 17 C -0.11 -0.91 10.05 -39.58 -0.40 -1.31 16 18 C -0.08 -0.59 9.40 -39.58 -0.37 -0.97 16 19 C -0.18 -1.54 5.45 -104.63 -0.57 -2.11 16 20 C 0.51 4.34 3.36 36.01 0.12 4.46 16 21 F -0.18 -1.59 17.30 2.25 0.04 -1.55 16 22 F -0.18 -1.56 16.46 2.25 0.04 -1.52 16 23 F -0.17 -1.52 16.47 2.25 0.04 -1.49 16 24 C -0.07 -0.57 9.05 -39.58 -0.36 -0.92 16 25 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 26 H 0.01 0.33 7.20 -51.93 -0.37 -0.05 16 27 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 30 H 0.08 1.20 8.14 -51.92 -0.42 0.77 16 31 H 0.11 1.24 8.14 -51.92 -0.42 0.82 16 32 H 0.10 0.88 8.08 -51.93 -0.42 0.46 16 33 H 0.13 0.70 8.09 -51.93 -0.42 0.28 16 34 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 35 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 36 H 0.14 0.81 7.60 -52.49 -0.40 0.41 16 37 H 0.14 0.84 7.61 -52.49 -0.40 0.44 16 LS Contribution 343.29 15.07 5.17 5.17 Total: -1.00 -35.97 343.29 -7.93 -43.90 By element: Atomic # 1 Polarization: 0.69 SS G_CDS: -4.53 Total: -3.83 kcal Atomic # 6 Polarization: -25.00 SS G_CDS: -2.74 Total: -27.74 kcal Atomic # 7 Polarization: -27.85 SS G_CDS: 0.77 Total: -27.08 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.64 Total: -15.38 kcal Atomic # 9 Polarization: -4.67 SS G_CDS: 0.11 Total: -4.56 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Atomic # 16 Polarization: 14.03 SS G_CDS: -1.41 Total: 12.62 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.97 -7.93 -43.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078700443.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.516 kcal (2) G-P(sol) polarization free energy of solvation -35.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds