Wall clock time and date at job start Tue Mar 31 2020 12:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99787 * 2 1 4 4 H 1.48497 * 109.47507 * 270.00123 * 3 2 1 5 5 H 1.48504 * 109.47388 * 30.00375 * 3 2 1 6 6 H 1.48505 * 109.47259 * 150.00063 * 3 2 1 7 7 C 1.37873 * 120.00302 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99707 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00284 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47290 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47180 * 179.97438 * 10 9 7 12 12 S 1.81404 * 109.47336 * 180.02562 * 11 10 9 13 13 O 1.42099 * 109.46875 * 296.39099 * 12 11 10 14 14 C 1.81398 * 103.00020 * 179.97438 * 12 11 10 15 15 C 1.50706 * 109.46789 * 179.97438 * 14 12 11 16 16 C 1.38253 * 120.00297 * 269.95290 * 15 14 12 17 17 C 1.38204 * 119.99863 * 179.97438 * 16 15 14 18 18 C 1.38261 * 120.00515 * 0.07163 * 17 16 15 19 19 C 1.38208 * 119.99533 * 359.95684 * 18 17 16 20 20 C 1.50701 * 119.99804 * 180.02562 * 19 18 17 21 21 F 1.39904 * 109.46886 * 270.01653 * 20 19 18 22 22 F 1.39894 * 109.47439 * 30.01878 * 20 19 18 23 23 F 1.39902 * 109.47089 * 150.01960 * 20 19 18 24 24 C 1.38220 * 119.99654 * 90.00482 * 15 14 12 25 25 H 0.97001 * 120.00226 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.47239 * 59.99654 * 9 7 2 27 27 H 1.09000 * 109.47092 * 300.00388 * 9 7 2 28 28 H 1.09006 * 109.47069 * 59.99787 * 10 9 7 29 29 H 1.08998 * 109.47059 * 300.00384 * 10 9 7 30 30 H 1.09006 * 109.47168 * 60.00001 * 11 10 9 31 31 H 1.08998 * 109.47563 * 300.00229 * 11 10 9 32 32 H 1.08997 * 109.46937 * 60.00060 * 14 12 11 33 33 H 1.08996 * 109.47271 * 299.99678 * 14 12 11 34 34 H 1.08005 * 119.99943 * 0.04949 * 16 15 14 35 35 H 1.08004 * 120.00227 * 180.02562 * 17 16 15 36 36 H 1.07992 * 120.00025 * 179.97438 * 18 17 16 37 37 H 1.08000 * 119.99660 * 0.27001 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6364 -0.0001 11 6 5.5515 -2.6364 -0.0001 12 16 6.1563 -4.3467 -0.0010 13 8 5.7528 -4.9923 1.1988 14 6 7.9587 -4.1421 -0.0018 15 6 8.6180 -5.4973 -0.0020 16 6 8.9218 -6.1185 1.1952 17 6 9.5259 -7.3615 1.1950 18 6 9.8279 -7.9832 -0.0025 19 6 9.5247 -7.3620 -1.1993 20 6 9.8532 -8.0399 -2.5045 21 9 11.1412 -7.6731 -2.9092 22 9 9.7945 -9.4276 -2.3370 23 9 8.9290 -7.6483 -3.4790 24 6 8.9199 -6.1188 -1.1991 25 1 -0.4850 0.8400 0.0004 26 1 3.8746 -0.6807 0.8905 27 1 3.8752 -0.6795 -0.8894 28 1 3.6586 -3.1501 -0.8903 29 1 3.6579 -3.1505 0.8896 30 1 5.9149 -2.1226 0.8899 31 1 5.9149 -2.1225 -0.8900 32 1 8.2622 -3.5909 0.8883 33 1 8.2614 -3.5903 -0.8917 34 1 8.6859 -5.6328 2.1307 35 1 9.7629 -7.8470 2.1302 36 1 10.3003 -8.9543 -0.0026 37 1 8.6873 -5.6312 -2.1343 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078700443.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:48 Heat of formation + Delta-G solvation = -202.408543 kcal Electronic energy + Delta-G solvation = -23397.590389 eV Core-core repulsion = 19236.093377 eV Total energy + Delta-G solvation = -4161.497012 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.080 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.12776 -48.64316 -48.59506 -40.48759 -36.81512 -36.32702 -34.26603 -34.12910 -32.75481 -29.93866 -28.35021 -27.04050 -25.09190 -23.40979 -22.59110 -21.86112 -19.46333 -19.35459 -19.21976 -18.90089 -18.31433 -17.30148 -16.68482 -16.58594 -16.19855 -16.07536 -15.85834 -15.48604 -15.41241 -15.11865 -15.02474 -14.83086 -14.77916 -14.74856 -14.55300 -14.17948 -13.92558 -13.77481 -13.62579 -13.43052 -13.04865 -12.73755 -12.54580 -12.39995 -12.21672 -12.12461 -11.81238 -11.53252 -11.36012 -11.11724 -10.76751 -10.25949 -9.88328 -9.08476 -8.29826 -6.34838 -0.18577 0.07295 0.73701 1.35257 1.38501 1.49858 1.67284 1.74331 2.36065 2.47605 2.72329 2.84229 3.04391 3.05336 3.45096 3.57486 3.82719 3.99859 4.04666 4.12525 4.18228 4.21263 4.43946 4.55057 4.57861 4.79244 4.81787 4.95147 5.02945 5.09394 5.10684 5.23548 5.37805 5.47133 5.54932 5.65891 5.71456 6.27520 6.73770 7.29945 8.87285 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.025368 B = 0.002335 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.472839 B =11990.513523 C =12358.395925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.001 4.001 3 Si 0.956 3.044 4 H -0.256 1.256 5 H -0.288 1.288 6 H -0.249 1.249 7 C -0.539 4.539 8 H 0.029 0.971 9 C -0.008 4.008 10 C -0.088 4.088 11 C -0.439 4.439 12 S 1.279 4.721 13 O -0.907 6.907 14 C -0.405 4.405 15 C -0.075 4.075 16 C -0.100 4.100 17 C -0.119 4.119 18 C -0.076 4.076 19 C -0.191 4.191 20 C 0.513 3.487 21 F -0.180 7.180 22 F -0.180 7.180 23 F -0.175 7.175 24 C -0.068 4.068 25 H 0.266 0.734 26 H 0.009 0.991 27 H 0.038 0.962 28 H 0.080 0.920 29 H 0.026 0.974 30 H 0.074 0.926 31 H 0.156 0.844 32 H 0.097 0.903 33 H 0.173 0.827 34 H 0.123 0.877 35 H 0.155 0.845 36 H 0.153 0.847 37 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.054 -14.843 -6.339 32.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.197 4.197 3 Si 0.779 3.221 4 H -0.181 1.181 5 H -0.214 1.214 6 H -0.173 1.173 7 C -0.578 4.578 8 H 0.047 0.953 9 C -0.047 4.047 10 C -0.126 4.126 11 C -0.577 4.577 12 S 1.482 4.518 13 O -0.903 6.903 14 C -0.541 4.541 15 C -0.076 4.076 16 C -0.119 4.119 17 C -0.137 4.137 18 C -0.095 4.095 19 C -0.193 4.193 20 C 0.459 3.541 21 F -0.161 7.161 22 F -0.162 7.162 23 F -0.156 7.156 24 C -0.087 4.087 25 H 0.075 0.925 26 H 0.027 0.973 27 H 0.056 0.944 28 H 0.099 0.901 29 H 0.045 0.955 30 H 0.093 0.907 31 H 0.174 0.826 32 H 0.116 0.884 33 H 0.191 0.809 34 H 0.141 0.859 35 H 0.172 0.828 36 H 0.170 0.830 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 27.371 -15.589 -6.346 32.132 hybrid contribution 0.227 1.690 2.067 2.680 sum 27.598 -13.899 -4.278 31.195 Atomic orbital electron populations 1.70085 1.08461 1.28237 1.52630 1.26115 0.95688 1.03854 0.94036 0.85574 0.79187 0.77700 0.79648 1.18077 1.21369 1.17263 1.21586 0.92501 0.93121 1.50549 0.95272 1.19553 0.93522 0.94741 0.96884 1.20995 0.92206 0.98236 1.01187 1.27688 1.02039 1.19086 1.08838 1.70097 0.85424 0.86148 1.10099 1.93022 1.77775 1.66450 1.53052 1.26716 1.17983 0.98544 1.10867 1.19213 0.99830 0.95433 0.93154 1.21575 0.96044 0.95893 0.98394 1.21382 0.98471 0.94714 0.99090 1.21215 0.97049 1.00363 0.90876 1.20055 1.08470 0.98471 0.92267 1.18244 0.74359 0.76497 0.84971 1.93225 1.39678 1.91388 1.91857 1.93186 1.96102 1.31306 1.95560 1.93207 1.66201 1.90630 1.65597 1.21151 0.94998 0.92870 0.99645 0.92483 0.97254 0.94414 0.90137 0.95490 0.90738 0.82612 0.88383 0.80934 0.85885 0.82776 0.82957 0.81205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.55 13.96 21.45 0.30 -60.25 16 2 C 0.00 -0.03 5.47 84.65 0.46 0.43 16 3 Si 0.96 43.88 27.47 68.60 1.88 45.77 16 4 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 5 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.25 -10.61 6.54 99.48 0.65 -9.96 16 7 C -0.54 -31.54 9.66 25.60 0.25 -31.30 16 8 H 0.03 1.88 7.99 -2.91 -0.02 1.86 16 9 C -0.01 -0.39 4.04 29.85 0.12 -0.27 16 10 C -0.09 -3.30 5.16 30.59 0.16 -3.14 16 11 C -0.44 -11.06 5.92 71.98 0.43 -10.63 16 12 S 1.28 26.93 13.14 -56.49 -0.74 26.19 16 13 O -0.91 -32.34 18.14 -148.98 -2.70 -35.04 16 14 C -0.41 -5.56 6.05 71.24 0.43 -5.13 16 15 C -0.07 -1.20 5.14 -19.86 -0.10 -1.30 16 16 C -0.10 -1.79 9.70 22.27 0.22 -1.57 16 17 C -0.12 -1.73 10.05 22.27 0.22 -1.50 16 18 C -0.08 -1.05 9.40 22.27 0.21 -0.84 16 19 C -0.19 -2.83 5.45 -19.87 -0.11 -2.93 16 20 C 0.51 7.68 3.36 71.24 0.24 7.92 16 21 F -0.18 -2.85 17.30 44.97 0.78 -2.07 16 22 F -0.18 -2.86 16.46 44.97 0.74 -2.12 16 23 F -0.18 -2.68 16.47 44.97 0.74 -1.94 16 24 C -0.07 -0.91 9.05 22.27 0.20 -0.71 16 25 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 26 H 0.01 0.43 7.20 -2.38 -0.02 0.41 16 27 H 0.04 1.57 7.57 -2.39 -0.02 1.55 16 28 H 0.08 2.75 8.14 -2.38 -0.02 2.73 16 29 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.16 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.10 1.47 8.08 -2.39 -0.02 1.45 16 33 H 0.17 0.92 8.09 -2.39 -0.02 0.90 16 34 H 0.12 2.31 8.06 -2.91 -0.02 2.28 16 35 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 36 H 0.15 1.49 7.60 -2.91 -0.02 1.47 16 37 H 0.17 1.29 7.61 -2.91 -0.02 1.27 16 Total: -1.00 -81.71 343.29 4.75 -76.96 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: 1.03 Total: 3.49 kcal Atomic # 6 Polarization: -53.71 SS G_CDS: 2.73 Total: -50.99 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: 0.30 Total: -60.25 kcal Atomic # 8 Polarization: -32.34 SS G_CDS: -2.70 Total: -35.04 kcal Atomic # 9 Polarization: -8.39 SS G_CDS: 2.26 Total: -6.13 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.88 Total: 45.77 kcal Atomic # 16 Polarization: 26.93 SS G_CDS: -0.74 Total: 26.19 kcal Total: -81.71 4.75 -76.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078700443.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.447 kcal (2) G-P(sol) polarization free energy of solvation -81.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds