Wall clock time and date at job start Tue Mar 31 2020 12:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00419 * 2 1 4 4 H 1.48501 * 109.47319 * 239.99942 * 3 2 1 5 5 H 1.48494 * 109.47091 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47221 * 119.99883 * 3 2 1 7 7 C 1.37882 * 119.99451 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99879 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00229 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46761 * 180.02562 * 10 9 7 12 12 S 1.81403 * 109.47018 * 179.97438 * 11 10 9 13 13 O 1.42102 * 109.47051 * 296.38914 * 12 11 10 14 14 C 1.81402 * 102.99811 * 180.02562 * 12 11 10 15 15 C 1.50700 * 109.46841 * 180.02562 * 14 12 11 16 16 C 1.38234 * 120.00260 * 90.00049 * 15 14 12 17 17 C 1.38234 * 120.00240 * 179.97438 * 16 15 14 18 18 C 1.38233 * 120.00037 * 0.26327 * 17 16 15 19 19 C 1.50693 * 120.00207 * 179.72405 * 18 17 16 20 20 F 1.39904 * 109.47272 * 89.99432 * 19 18 17 21 21 F 1.39901 * 109.47232 * 209.99686 * 19 18 17 22 22 F 1.39894 * 109.47054 * 329.99662 * 19 18 17 23 23 C 1.38239 * 119.99756 * 359.45918 * 18 17 16 24 24 C 1.38234 * 119.99992 * 0.53603 * 23 18 17 25 25 H 0.97007 * 119.99711 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.46427 * 60.00298 * 9 7 2 27 27 H 1.08999 * 109.46798 * 300.00139 * 9 7 2 28 28 H 1.08995 * 109.47316 * 60.00494 * 10 9 7 29 29 H 1.08993 * 109.47006 * 299.99824 * 10 9 7 30 30 H 1.09008 * 109.46993 * 59.99950 * 11 10 9 31 31 H 1.08998 * 109.47560 * 299.99865 * 11 10 9 32 32 H 1.08999 * 109.47359 * 60.00130 * 14 12 11 33 33 H 1.08999 * 109.47548 * 300.00017 * 14 12 11 34 34 H 1.07999 * 119.99751 * 359.97438 * 16 15 14 35 35 H 1.08002 * 119.99744 * 179.97438 * 17 16 15 36 36 H 1.08000 * 119.99962 * 180.30225 * 23 18 17 37 37 H 1.08002 * 120.00264 * 179.76377 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2508 -2.4993 0.0017 10 6 2.2450 -3.6622 0.0027 11 6 1.4799 -4.9871 0.0033 12 16 2.6586 -6.3660 0.0037 13 8 3.4190 -6.3396 -1.1964 14 6 1.5802 -7.8247 0.0036 15 6 2.4241 -9.0732 0.0046 16 6 2.8104 -9.6455 1.2021 17 6 3.5840 -10.7911 1.2030 18 6 3.9760 -11.3614 0.0064 19 6 4.8245 -12.6067 0.0073 20 9 3.9971 -13.7348 0.0047 21 9 5.6347 -12.6198 -1.1332 22 9 5.6295 -12.6215 1.1514 23 6 3.5849 -10.7924 -1.1913 24 6 2.8112 -9.6469 -1.1922 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5575 -0.8881 27 1 0.6245 -2.5563 0.8920 28 1 2.8716 -3.6038 0.8927 29 1 2.8716 -3.6053 -0.8873 30 1 0.8535 -5.0453 -0.8869 31 1 0.8529 -5.0444 0.8931 32 1 0.9513 -7.8115 -0.8866 33 1 0.9507 -7.8114 0.8933 34 1 2.5077 -9.1976 2.1371 35 1 3.8861 -11.2379 2.1387 36 1 3.8870 -11.2407 -2.1262 37 1 2.5088 -9.2001 -2.1278 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078703287.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:26 Heat of formation + Delta-G solvation = -183.869447 kcal Electronic energy + Delta-G solvation = -23118.311363 eV Core-core repulsion = 18957.618267 eV Total energy + Delta-G solvation = -4160.693097 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.080 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.46457 -47.97866 -47.92998 -39.82188 -35.59046 -34.49246 -33.80145 -32.07149 -31.48361 -28.87244 -27.56098 -25.11582 -23.45999 -23.32393 -21.69646 -20.31990 -18.83122 -18.77304 -18.67475 -17.48278 -16.39604 -16.06368 -15.83149 -15.39314 -15.08923 -14.87597 -14.79714 -14.66548 -14.47257 -14.39127 -14.20168 -14.10138 -14.08549 -13.82546 -13.39985 -13.12955 -12.78131 -12.43690 -12.19385 -12.01660 -11.71756 -11.54829 -11.45260 -10.89653 -10.85224 -10.76856 -10.38969 -9.84971 -9.65046 -9.44106 -9.22929 -8.95010 -8.39157 -8.08333 -6.04236 -4.07092 0.43484 0.90169 1.60860 2.34460 2.68559 3.15971 3.31526 3.35777 3.38650 3.39663 3.70498 3.81517 4.11108 4.32407 4.39209 4.43100 4.47739 4.84212 4.92324 5.13490 5.20790 5.31325 5.38859 5.47856 5.51953 5.54880 5.78600 5.81702 6.08586 6.11747 6.37723 6.44213 6.63109 6.98400 7.60649 7.72809 7.94620 8.36271 8.99540 9.57318 11.06932 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.039621 B = 0.001986 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.526646 B =14096.268114 C =14250.117892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.027 3.973 10 C -0.094 4.094 11 C -0.433 4.433 12 S 1.235 4.765 13 O -0.839 6.839 14 C -0.426 4.426 15 C -0.024 4.024 16 C -0.119 4.119 17 C -0.066 4.066 18 C -0.193 4.193 19 C 0.510 3.490 20 F -0.178 7.178 21 F -0.178 7.178 22 F -0.177 7.177 23 C -0.065 4.065 24 C -0.114 4.114 25 H 0.261 0.739 26 H 0.014 0.986 27 H 0.019 0.981 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.115 0.885 32 H 0.099 0.901 33 H 0.131 0.869 34 H 0.145 0.855 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.441 -26.445 5.026 27.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.133 4.133 11 C -0.572 4.572 12 S 1.435 4.565 13 O -0.834 6.834 14 C -0.559 4.559 15 C -0.025 4.025 16 C -0.138 4.138 17 C -0.085 4.085 18 C -0.195 4.195 19 C 0.455 3.545 20 F -0.160 7.160 21 F -0.159 7.159 22 F -0.158 7.158 23 C -0.083 4.083 24 C -0.133 4.133 25 H 0.071 0.929 26 H 0.033 0.967 27 H 0.038 0.962 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.133 0.867 32 H 0.118 0.882 33 H 0.149 0.851 34 H 0.162 0.838 35 H 0.156 0.844 36 H 0.153 0.847 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.289 -26.349 4.993 27.545 hybrid contribution -0.954 0.705 -1.930 2.265 sum 5.335 -25.644 3.064 26.372 Atomic orbital electron populations 1.69952 1.06090 1.26791 1.50705 1.25031 0.94878 0.99333 0.95222 0.86631 0.79575 0.82948 0.78713 1.20234 1.21282 1.20093 1.21233 0.93122 0.91021 1.50864 0.92574 1.19091 0.93779 0.90888 0.97352 1.21324 0.98992 0.91799 1.01164 1.27683 1.11519 1.10699 1.07287 1.70782 0.87817 0.85365 1.12518 1.93126 1.55780 1.83684 1.50813 1.26945 1.10097 1.10034 1.08780 1.19438 0.95269 0.94255 0.93535 1.21108 0.98748 0.95733 0.98201 1.20933 0.95504 0.95186 0.96835 1.19954 1.05476 0.97394 0.96645 1.18306 0.78504 0.84077 0.73568 1.93225 1.71969 1.54632 1.96158 1.93196 1.74631 1.96797 1.51265 1.93189 1.74909 1.96803 1.50942 1.20905 0.95325 0.95075 0.96967 1.21122 0.98340 0.95330 0.98531 0.92907 0.96750 0.96234 0.92047 0.92789 0.89973 0.86692 0.88248 0.85068 0.83751 0.84354 0.84672 0.84931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.03 0.69 4.97 -27.88 -0.14 0.55 16 10 C -0.09 -1.84 5.16 -26.73 -0.14 -1.98 16 11 C -0.43 -6.31 5.92 37.16 0.22 -6.09 16 12 S 1.23 14.27 13.14 -107.50 -1.41 12.85 16 13 O -0.84 -15.07 18.14 -35.23 -0.64 -15.71 16 14 C -0.43 -3.71 6.05 36.01 0.22 -3.49 16 15 C -0.02 -0.22 5.14 -104.62 -0.54 -0.76 16 16 C -0.12 -0.87 9.70 -39.58 -0.38 -1.25 16 17 C -0.07 -0.51 9.40 -39.58 -0.37 -0.88 16 18 C -0.19 -1.76 5.45 -104.63 -0.57 -2.33 16 19 C 0.51 4.66 3.36 36.00 0.12 4.78 16 20 F -0.18 -1.69 17.30 2.25 0.04 -1.65 16 21 F -0.18 -1.74 16.47 2.25 0.04 -1.70 16 22 F -0.18 -1.61 16.46 2.25 0.04 -1.58 16 23 C -0.06 -0.61 9.40 -39.58 -0.37 -0.99 16 24 C -0.11 -1.18 9.70 -39.58 -0.38 -1.56 16 25 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.08 1.29 8.14 -51.92 -0.42 0.87 16 31 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.10 0.94 8.09 -51.92 -0.42 0.52 16 33 H 0.13 0.72 8.08 -51.92 -0.42 0.30 16 34 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 35 H 0.14 0.77 7.60 -52.49 -0.40 0.37 16 36 H 0.14 1.09 7.61 -52.49 -0.40 0.69 16 37 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 LS Contribution 346.89 15.07 5.23 5.23 Total: -1.00 -35.55 346.89 -8.31 -43.85 By element: Atomic # 1 Polarization: 0.23 SS G_CDS: -4.56 Total: -4.33 kcal Atomic # 6 Polarization: -24.76 SS G_CDS: -2.75 Total: -27.51 kcal Atomic # 7 Polarization: -26.68 SS G_CDS: 0.74 Total: -25.94 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.64 Total: -15.71 kcal Atomic # 9 Polarization: -5.04 SS G_CDS: 0.11 Total: -4.93 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 14.27 SS G_CDS: -1.41 Total: 12.85 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.55 -8.31 -43.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078703287.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.017 kcal (2) G-P(sol) polarization free energy of solvation -35.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds