Wall clock time and date at job start Tue Mar 31 2020 13:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 120.00181 * 2 1 4 4 C 1.50698 * 109.47235 * 270.00334 * 3 2 1 5 5 H 1.08001 * 119.99733 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00056 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99906 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 120.00017 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47347 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47223 * 119.99845 * 8 6 4 11 11 H 1.48500 * 109.46995 * 239.99678 * 8 6 4 12 12 C 1.34775 * 120.00111 * 180.02562 * 2 1 3 13 13 O 1.21589 * 120.00380 * 179.97438 * 12 2 1 14 14 N 1.34785 * 119.99990 * 0.02562 * 12 2 1 15 15 C 1.40058 * 119.99732 * 184.59158 * 14 12 2 16 16 C 1.38866 * 120.04719 * 324.88317 * 15 14 12 17 17 C 1.38091 * 119.95479 * 180.02562 * 16 15 14 18 18 C 1.38488 * 120.04656 * 0.02716 * 17 16 15 19 19 F 1.35107 * 119.95609 * 180.27702 * 18 17 16 20 20 C 1.38452 * 120.08930 * 359.97438 * 18 17 16 21 21 C 1.50699 * 119.97677 * 179.97438 * 20 18 17 22 22 F 1.39901 * 109.47193 * 180.02562 * 21 20 18 23 23 F 1.39902 * 109.47530 * 300.00841 * 21 20 18 24 24 F 1.39901 * 109.47040 * 60.00476 * 21 20 18 25 25 C 1.38134 * 120.04604 * 359.97438 * 20 18 17 26 26 H 1.08999 * 109.46816 * 269.99917 * 1 2 3 27 27 H 1.08999 * 109.46988 * 29.99820 * 1 2 3 28 28 H 1.09005 * 109.46840 * 149.99949 * 1 2 3 29 29 H 1.09010 * 109.46713 * 29.99912 * 3 2 1 30 30 H 1.08999 * 109.47510 * 149.99795 * 3 2 1 31 31 H 0.97000 * 119.99724 * 179.97438 * 7 6 4 32 32 H 0.97001 * 119.99628 * 4.58773 * 14 12 2 33 33 H 1.08001 * 120.01604 * 0.02562 * 16 15 14 34 34 H 1.07997 * 119.97787 * 180.02562 * 17 16 15 35 35 H 1.07999 * 120.02843 * 179.97438 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1260 2.8780 -1.6727 7 7 3.5525 3.6186 -0.6731 8 14 3.4366 3.4176 -3.4338 9 1 2.8597 2.4171 -4.3673 10 1 2.7986 4.7382 -3.6668 11 1 4.8991 3.5264 -3.6675 12 6 2.1389 -1.1672 -0.0005 13 8 3.3548 -1.1672 -0.0010 14 7 1.4650 -2.3345 -0.0016 15 6 2.1620 -3.5455 0.0950 16 6 3.4063 -3.6814 -0.5063 17 6 4.0915 -4.8765 -0.4104 18 6 3.5385 -5.9391 0.2845 19 9 4.2130 -7.1057 0.3820 20 6 2.2980 -5.8056 0.8847 21 6 1.6982 -6.9638 1.6397 22 9 0.4508 -6.5908 2.1517 23 9 1.5405 -8.0525 0.7753 24 9 2.5464 -7.3234 2.6925 25 6 1.6097 -4.6116 0.7920 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6084 2.0284 0.5139 30 1 3.1499 1.1384 0.5138 31 1 4.0293 4.4444 -0.8503 32 1 0.4974 -2.3357 -0.0691 33 1 3.8377 -2.8531 -1.0486 34 1 5.0595 -4.9825 -0.8775 35 1 0.6418 -4.5079 1.2599 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176557740.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:06 Heat of formation + Delta-G solvation = -183.435649 kcal Electronic energy + Delta-G solvation = -26633.273604 eV Core-core repulsion = 21938.678893 eV Total energy + Delta-G solvation = -4694.594711 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.089 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.40106 -49.16012 -47.85424 -47.80146 -40.54441 -38.69172 -35.21764 -34.58832 -32.66943 -32.19169 -29.60843 -27.75389 -26.29173 -25.92936 -23.54607 -23.06100 -21.97982 -19.86543 -18.97553 -18.69712 -18.53243 -17.80281 -17.54261 -16.68254 -16.46279 -16.06867 -15.84301 -15.05425 -14.87328 -14.79549 -14.66208 -14.37032 -14.24816 -14.20709 -13.97153 -13.92409 -13.55286 -13.41095 -13.21250 -12.93138 -12.61864 -12.48105 -12.27639 -12.01432 -11.50105 -11.30098 -10.97727 -10.68410 -10.32699 -10.22687 -9.76061 -9.64169 -9.36345 -8.52112 -8.27981 -7.77987 -6.12797 -4.18165 0.61550 0.85835 2.36434 2.87546 3.11089 3.24359 3.32479 3.35792 3.43973 3.68297 3.73041 3.97670 4.18501 4.23051 4.39933 4.50998 4.90123 4.93983 5.18618 5.22407 5.33897 5.41293 5.58074 5.72224 5.94577 6.01883 6.07594 6.25311 6.58403 6.79129 7.20135 7.33790 7.48724 7.83757 8.12145 8.35913 8.81230 9.01058 9.47504 10.95161 Molecular weight = 320.09amu Principal moments of inertia in cm(-1) A = 0.025207 B = 0.002924 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.549192 B = 9574.695565 C =10179.835172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.608 5.608 3 C 0.258 3.742 4 C -0.530 4.530 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.893 5.893 8 Si 0.899 3.101 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.698 3.302 13 O -0.567 6.567 14 N -0.694 5.694 15 C 0.175 3.825 16 C -0.060 4.060 17 C -0.132 4.132 18 C 0.121 3.879 19 F -0.130 7.130 20 C -0.204 4.204 21 C 0.516 3.484 22 F -0.175 7.175 23 F -0.174 7.174 24 F -0.173 7.173 25 C -0.086 4.086 26 H 0.048 0.952 27 H 0.081 0.919 28 H 0.051 0.949 29 H 0.036 0.964 30 H 0.047 0.953 31 H 0.264 0.736 32 H 0.406 0.594 33 H 0.166 0.834 34 H 0.150 0.850 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.898 -18.471 3.034 19.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.342 5.342 3 C 0.139 3.861 4 C -0.569 4.569 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.399 3.601 13 O -0.443 6.443 14 N -0.344 5.344 15 C 0.077 3.923 16 C -0.081 4.081 17 C -0.151 4.151 18 C 0.100 3.900 19 F -0.108 7.108 20 C -0.207 4.207 21 C 0.462 3.538 22 F -0.156 7.156 23 F -0.155 7.155 24 F -0.154 7.154 25 C -0.108 4.108 26 H 0.066 0.934 27 H 0.100 0.900 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.244 0.756 33 H 0.183 0.817 34 H 0.168 0.832 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.941 -18.191 3.116 19.388 hybrid contribution -0.387 0.033 -0.809 0.898 sum -6.328 -18.158 2.307 19.367 Atomic orbital electron populations 1.21639 0.81402 1.02557 1.00657 1.47532 1.05915 1.06226 1.74546 1.19313 0.92433 0.76647 0.97675 1.21463 1.36777 1.06370 0.92252 0.92361 1.24932 0.95273 0.96335 0.97507 1.69936 1.38222 1.14325 1.30715 0.86431 0.78139 0.78337 0.84423 1.19830 1.20934 1.20821 1.15910 0.85564 0.79994 0.78590 1.90891 1.11250 1.85367 1.56817 1.43000 1.10301 1.03292 1.77854 1.17398 0.93534 0.85440 0.95908 1.21675 0.93467 0.97236 0.95705 1.21114 1.01826 0.91482 1.00684 1.17215 0.89905 0.82979 0.99865 1.91546 1.79305 1.45556 1.94395 1.19656 0.97372 0.95775 1.07916 1.17994 0.75981 0.82272 0.77585 1.93169 1.43350 1.91272 1.87819 1.93230 1.95514 1.57081 1.69701 1.93236 1.70724 1.92654 1.58801 1.20525 1.01359 0.90934 0.97934 0.93370 0.90031 0.93088 0.94581 0.93533 0.92654 0.75631 0.81663 0.83205 0.83400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.12 10.24 59.85 0.61 1.73 16 2 N -0.61 -11.80 2.86 -188.73 -0.54 -12.34 16 3 C 0.26 6.35 5.16 -5.19 -0.03 6.33 16 4 C -0.53 -14.26 9.39 -34.44 -0.32 -14.58 16 5 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 6 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 7 N -0.89 -25.60 13.29 55.43 0.74 -24.87 16 8 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 9 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 C 0.70 13.32 8.12 -86.91 -0.71 12.62 16 13 O -0.57 -13.02 13.36 5.29 0.07 -12.95 16 14 N -0.69 -9.63 5.22 -14.20 -0.07 -9.70 16 15 C 0.17 2.31 6.30 -83.65 -0.53 1.78 16 16 C -0.06 -0.84 8.70 -39.40 -0.34 -1.18 16 17 C -0.13 -1.56 10.02 -39.54 -0.40 -1.96 16 18 C 0.12 1.48 7.13 -39.41 -0.28 1.19 16 19 F -0.13 -1.62 16.45 2.25 0.04 -1.58 16 20 C -0.20 -2.40 5.37 -104.58 -0.56 -2.96 16 21 C 0.52 5.90 3.02 36.01 0.11 6.00 16 22 F -0.17 -1.86 15.97 2.25 0.04 -1.82 16 23 F -0.17 -2.04 17.06 2.25 0.04 -2.00 16 24 F -0.17 -2.11 17.04 2.25 0.04 -2.08 16 25 C -0.09 -0.96 9.35 -39.40 -0.37 -1.33 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.08 1.17 8.07 -51.93 -0.42 0.75 16 28 H 0.05 0.53 6.30 -51.93 -0.33 0.20 16 29 H 0.04 0.90 8.07 -51.92 -0.42 0.48 16 30 H 0.05 1.30 7.42 -51.93 -0.39 0.91 16 31 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.41 4.24 6.52 -40.82 -0.27 3.97 16 33 H 0.17 2.66 6.22 -52.49 -0.33 2.34 16 34 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 35 H 0.15 1.31 7.15 -52.49 -0.38 0.93 16 LS Contribution 322.43 15.07 4.86 4.86 Total: -1.00 -31.08 322.43 -5.64 -36.72 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -2.91 Total: 0.47 kcal Atomic # 6 Polarization: 12.16 SS G_CDS: -2.91 Total: 9.25 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: 0.12 Total: -46.90 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.07 Total: -12.95 kcal Atomic # 9 Polarization: -7.63 SS G_CDS: 0.15 Total: -7.48 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.08 -5.64 -36.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176557740.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.718 kcal (2) G-P(sol) polarization free energy of solvation -31.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds