Wall clock time and date at job start Tue Mar 31 2020 13:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 120.00181 * 2 1 4 4 C 1.50698 * 109.47235 * 270.00334 * 3 2 1 5 5 H 1.08001 * 119.99733 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00056 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99906 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 120.00017 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47347 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47223 * 119.99845 * 8 6 4 11 11 H 1.48500 * 109.46995 * 239.99678 * 8 6 4 12 12 C 1.34775 * 120.00111 * 180.02562 * 2 1 3 13 13 O 1.21589 * 120.00380 * 179.97438 * 12 2 1 14 14 N 1.34785 * 119.99990 * 0.02562 * 12 2 1 15 15 C 1.40058 * 119.99732 * 184.59158 * 14 12 2 16 16 C 1.38866 * 120.04719 * 324.88317 * 15 14 12 17 17 C 1.38091 * 119.95479 * 180.02562 * 16 15 14 18 18 C 1.38488 * 120.04656 * 0.02716 * 17 16 15 19 19 F 1.35107 * 119.95609 * 180.27702 * 18 17 16 20 20 C 1.38452 * 120.08930 * 359.97438 * 18 17 16 21 21 C 1.50699 * 119.97677 * 179.97438 * 20 18 17 22 22 F 1.39901 * 109.47193 * 180.02562 * 21 20 18 23 23 F 1.39902 * 109.47530 * 300.00841 * 21 20 18 24 24 F 1.39901 * 109.47040 * 60.00476 * 21 20 18 25 25 C 1.38134 * 120.04604 * 359.97438 * 20 18 17 26 26 H 1.08999 * 109.46816 * 269.99917 * 1 2 3 27 27 H 1.08999 * 109.46988 * 29.99820 * 1 2 3 28 28 H 1.09005 * 109.46840 * 149.99949 * 1 2 3 29 29 H 1.09010 * 109.46713 * 29.99912 * 3 2 1 30 30 H 1.08999 * 109.47510 * 149.99795 * 3 2 1 31 31 H 0.97000 * 119.99724 * 179.97438 * 7 6 4 32 32 H 0.97001 * 119.99628 * 4.58773 * 14 12 2 33 33 H 1.08001 * 120.01604 * 0.02562 * 16 15 14 34 34 H 1.07997 * 119.97787 * 180.02562 * 17 16 15 35 35 H 1.07999 * 120.02843 * 179.97438 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1260 2.8780 -1.6727 7 7 3.5525 3.6186 -0.6731 8 14 3.4366 3.4176 -3.4338 9 1 2.8597 2.4171 -4.3673 10 1 2.7986 4.7382 -3.6668 11 1 4.8991 3.5264 -3.6675 12 6 2.1389 -1.1672 -0.0005 13 8 3.3548 -1.1672 -0.0010 14 7 1.4650 -2.3345 -0.0016 15 6 2.1620 -3.5455 0.0950 16 6 3.4063 -3.6814 -0.5063 17 6 4.0915 -4.8765 -0.4104 18 6 3.5385 -5.9391 0.2845 19 9 4.2130 -7.1057 0.3820 20 6 2.2980 -5.8056 0.8847 21 6 1.6982 -6.9638 1.6397 22 9 0.4508 -6.5908 2.1517 23 9 1.5405 -8.0525 0.7753 24 9 2.5464 -7.3234 2.6925 25 6 1.6097 -4.6116 0.7920 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6084 2.0284 0.5139 30 1 3.1499 1.1384 0.5138 31 1 4.0293 4.4444 -0.8503 32 1 0.4974 -2.3357 -0.0691 33 1 3.8377 -2.8531 -1.0486 34 1 5.0595 -4.9825 -0.8775 35 1 0.6418 -4.5079 1.2599 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176557740.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:05 Heat of formation + Delta-G solvation = -201.658598 kcal Electronic energy + Delta-G solvation = -26634.063810 eV Core-core repulsion = 21938.678893 eV Total energy + Delta-G solvation = -4695.384917 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.089 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -51.30885 -50.14166 -48.74039 -48.72590 -41.81074 -39.89820 -36.76228 -35.92945 -34.62380 -33.18847 -30.85832 -29.39896 -27.38960 -27.20091 -25.23785 -24.06268 -23.23964 -21.19064 -20.01718 -19.60719 -19.48235 -19.03899 -18.71165 -18.61445 -17.62323 -17.23063 -16.83874 -16.71904 -16.37322 -15.84182 -15.67732 -15.57523 -15.28575 -15.14725 -14.89122 -14.87425 -14.84031 -14.65338 -14.49368 -14.10284 -13.93849 -13.65247 -13.53291 -13.45798 -13.11106 -12.79815 -12.53363 -12.48953 -12.18064 -11.69725 -11.49018 -11.07299 -10.62613 -10.48242 -9.61302 -9.15686 -8.20194 -6.34619 -0.38710 -0.11670 1.38268 1.39316 1.41729 1.52395 1.65400 1.95907 2.34708 2.43662 2.51701 2.76734 2.95118 3.06919 3.10705 3.27053 3.58174 3.89083 3.99813 4.13022 4.32351 4.49791 4.62872 4.67430 4.83663 4.96552 4.99316 5.05536 5.17912 5.26267 5.54921 5.67881 5.76373 6.01159 6.07127 6.74669 6.98570 7.32157 7.56109 8.86477 Molecular weight = 320.09amu Principal moments of inertia in cm(-1) A = 0.025207 B = 0.002924 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.549192 B = 9574.695565 C =10179.835172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.616 5.616 3 C 0.274 3.726 4 C -0.541 4.541 5 H 0.055 0.945 6 C 0.009 3.991 7 N -0.928 5.928 8 Si 0.966 3.034 9 H -0.267 1.267 10 H -0.272 1.272 11 H -0.283 1.283 12 C 0.694 3.306 13 O -0.615 6.615 14 N -0.672 5.672 15 C 0.158 3.842 16 C -0.075 4.075 17 C -0.125 4.125 18 C 0.119 3.881 19 F -0.131 7.131 20 C -0.206 4.206 21 C 0.521 3.479 22 F -0.167 7.167 23 F -0.175 7.175 24 F -0.178 7.178 25 C -0.065 4.065 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.030 0.970 30 H 0.003 0.997 31 H 0.267 0.733 32 H 0.425 0.575 33 H 0.139 0.861 34 H 0.168 0.832 35 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.576 -19.814 2.541 21.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.350 5.350 3 C 0.153 3.847 4 C -0.579 4.579 5 H 0.073 0.927 6 C -0.190 4.190 7 N -0.568 5.568 8 Si 0.790 3.210 9 H -0.191 1.191 10 H -0.197 1.197 11 H -0.210 1.210 12 C 0.396 3.604 13 O -0.495 6.495 14 N -0.324 5.324 15 C 0.062 3.938 16 C -0.096 4.096 17 C -0.145 4.145 18 C 0.098 3.902 19 F -0.109 7.109 20 C -0.209 4.209 21 C 0.466 3.534 22 F -0.148 7.148 23 F -0.156 7.156 24 F -0.159 7.159 25 C -0.085 4.085 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.108 0.892 29 H 0.048 0.952 30 H 0.021 0.979 31 H 0.076 0.924 32 H 0.266 0.734 33 H 0.157 0.843 34 H 0.185 0.815 35 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -7.695 -19.587 2.626 21.207 hybrid contribution 0.126 0.349 -0.606 0.710 sum -7.569 -19.238 2.020 20.771 Atomic orbital electron populations 1.21948 0.77749 1.04132 1.02862 1.47361 1.08092 1.04780 1.74809 1.18738 0.91061 0.78876 0.96032 1.21746 1.36645 1.06396 0.93144 0.92700 1.25804 0.95025 0.96507 1.01660 1.70049 1.39009 1.14831 1.32869 0.85396 0.77776 0.78340 0.79440 1.19107 1.19690 1.20951 1.16045 0.85100 0.81020 0.78204 1.90864 1.13580 1.86289 1.58719 1.42559 1.10985 1.01873 1.76975 1.17503 0.93675 0.85589 0.97076 1.21518 0.94322 0.97226 0.96535 1.21189 1.02321 0.90639 1.00313 1.17303 0.90139 0.82890 0.99825 1.91547 1.79401 1.45581 1.94390 1.19775 0.97239 0.96165 1.07711 1.17876 0.76127 0.82014 0.77364 1.93186 1.42771 1.91166 1.87693 1.93232 1.95519 1.57129 1.69747 1.93232 1.70986 1.92680 1.59015 1.20670 1.01979 0.89533 0.96364 0.90783 0.90789 0.89243 0.95235 0.97925 0.92443 0.73391 0.84338 0.81469 0.80488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.90 10.24 127.77 1.31 3.21 16 2 N -0.62 -23.86 2.86 -869.29 -2.48 -26.34 16 3 C 0.27 13.93 5.16 85.63 0.44 14.38 16 4 C -0.54 -29.62 9.39 25.60 0.24 -29.38 16 5 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 6 C 0.01 0.51 5.46 84.65 0.46 0.97 16 7 N -0.93 -54.32 13.29 21.45 0.28 -54.03 16 8 Si 0.97 43.38 29.54 68.60 2.03 45.41 16 9 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 10 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 C 0.69 26.55 8.12 179.05 1.45 28.00 16 13 O -0.61 -29.28 13.36 -4.00 -0.05 -29.34 16 14 N -0.67 -17.53 5.22 -317.10 -1.66 -19.18 16 15 C 0.16 3.95 6.30 38.12 0.24 4.19 16 16 C -0.08 -2.08 8.70 22.39 0.19 -1.89 16 17 C -0.13 -2.88 10.02 22.29 0.22 -2.65 16 18 C 0.12 2.71 7.13 22.38 0.16 2.87 16 19 F -0.13 -3.06 16.45 44.97 0.74 -2.32 16 20 C -0.21 -4.36 5.37 -19.84 -0.11 -4.47 16 21 C 0.52 10.61 3.02 71.24 0.22 10.82 16 22 F -0.17 -3.02 15.97 44.97 0.72 -2.31 16 23 F -0.17 -3.71 17.06 44.97 0.77 -2.94 16 24 F -0.18 -3.99 17.04 44.97 0.77 -3.22 16 25 C -0.06 -1.26 9.35 22.39 0.21 -1.05 16 26 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.07 2.01 8.07 -2.39 -0.02 1.99 16 28 H 0.09 1.55 6.30 -2.38 -0.02 1.53 16 29 H 0.03 1.52 8.07 -2.38 -0.02 1.50 16 30 H 0.00 0.15 7.42 -2.39 -0.02 0.14 16 31 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 32 H 0.42 7.51 6.52 -92.71 -0.60 6.91 16 33 H 0.14 4.68 6.22 -2.91 -0.02 4.66 16 34 H 0.17 3.11 8.06 -2.91 -0.02 3.09 16 35 H 0.18 2.38 7.15 -2.91 -0.02 2.36 16 Total: -1.00 -69.29 322.43 6.72 -62.57 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: 0.57 Total: 6.70 kcal Atomic # 6 Polarization: 19.96 SS G_CDS: 5.04 Total: 25.01 kcal Atomic # 7 Polarization: -95.70 SS G_CDS: -3.85 Total: -99.55 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -0.05 Total: -29.34 kcal Atomic # 9 Polarization: -13.79 SS G_CDS: 2.99 Total: -10.79 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -69.29 6.72 -62.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176557740.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.093 kcal (2) G-P(sol) polarization free energy of solvation -69.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds