Wall clock time and date at job start Tue Mar 31 2020 12:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37094 * 120.00194 * 2 1 4 4 H 1.08000 * 119.99802 * 204.39852 * 3 2 1 5 5 C 1.38947 * 119.99832 * 24.39338 * 3 2 1 6 6 N 1.31405 * 120.00251 * 12.65793 * 5 3 2 7 7 Si 1.86807 * 119.99899 * 192.65878 * 5 3 2 8 8 H 1.48500 * 109.46822 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.47238 * 120.00149 * 7 5 3 10 10 H 1.48504 * 109.46900 * 240.00042 * 7 5 3 11 11 C 1.34778 * 119.99792 * 179.97438 * 2 1 3 12 12 O 1.21292 * 119.99626 * 180.02562 * 11 2 1 13 13 C 1.50699 * 120.00331 * 359.97438 * 11 2 1 14 14 C 1.50701 * 109.47281 * 179.97438 * 13 11 2 15 15 N 1.28811 * 124.75409 * 90.32452 * 14 13 11 16 16 C 1.32518 * 117.11517 * 180.19133 * 15 14 13 17 17 C 1.48366 * 122.95387 * 179.75049 * 16 15 14 18 18 C 1.39355 * 120.10247 * 359.71016 * 17 16 15 19 19 C 1.37980 * 119.90370 * 180.02562 * 18 17 16 20 20 C 1.38543 * 120.09850 * 359.97438 * 19 18 17 21 21 F 1.35097 * 119.90331 * 180.02562 * 20 19 18 22 22 C 1.38544 * 120.19629 * 0.27672 * 20 19 18 23 23 C 1.37989 * 120.09335 * 359.44737 * 22 20 19 24 24 C 1.34817 * 114.08211 * 359.48383 * 16 15 14 25 25 S 1.70915 * 124.75756 * 269.97581 * 14 13 11 26 26 H 1.09002 * 109.46949 * 265.86510 * 1 2 3 27 27 H 1.09004 * 109.47011 * 25.86489 * 1 2 3 28 28 H 1.09006 * 109.47231 * 145.86583 * 1 2 3 29 29 H 0.97000 * 120.00304 * 179.97438 * 6 5 3 30 30 H 1.08998 * 109.46983 * 59.99864 * 13 11 2 31 31 H 1.09006 * 109.47076 * 300.00391 * 13 11 2 32 32 H 1.07999 * 120.04705 * 0.04333 * 18 17 16 33 33 H 1.07997 * 119.95420 * 179.97438 * 19 18 17 34 34 H 1.07993 * 119.94795 * 179.72369 * 22 20 19 35 35 H 1.08006 * 120.04661 * 180.28911 * 23 22 20 36 36 H 1.08003 * 126.06345 * 180.26938 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1581 1.2289 -0.3864 5 6 1.5488 2.3368 0.4970 6 7 0.4348 2.2491 1.1884 7 14 2.3235 4.0073 0.1822 8 1 3.5644 3.8350 -0.6151 9 1 1.3682 4.8629 -0.5665 10 1 2.6541 4.6518 1.4786 11 6 2.1388 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0010 13 6 1.3854 -2.4723 0.0017 14 6 2.3647 -3.6178 0.0014 15 7 2.8381 -4.1793 1.0596 16 6 3.6952 -5.1745 0.8833 17 6 4.3230 -5.9081 2.0098 18 6 4.0249 -5.5571 3.3250 19 6 4.6115 -6.2417 4.3695 20 6 5.4955 -7.2771 4.1123 21 9 6.0672 -7.9451 5.1379 22 6 5.7988 -7.6260 2.8063 23 6 5.2124 -6.9505 1.7556 24 6 3.9420 -5.4654 -0.4098 25 16 2.9963 -4.3594 -1.4029 26 1 -0.3633 -0.0741 1.0250 27 1 -0.3633 0.9248 -0.4483 28 1 -0.3634 -0.8507 -0.5767 29 1 0.0149 3.0516 1.5356 30 1 0.7584 -2.5307 -0.8880 31 1 0.7590 -2.5295 0.8920 32 1 3.3354 -4.7506 3.5265 33 1 4.3814 -5.9702 5.3891 34 1 6.4918 -8.4308 2.6103 35 1 5.4458 -7.2263 0.7378 36 1 4.6024 -6.2392 -0.7726 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184722379.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:11 Heat of formation + Delta-G solvation = -0.740358 kcal Electronic energy + Delta-G solvation = -22906.328022 eV Core-core repulsion = 19204.265185 eV Total energy + Delta-G solvation = -3702.062837 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.074 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.04474 -40.12372 -38.73346 -38.06755 -34.76414 -32.71752 -31.69328 -31.35180 -30.10069 -28.10952 -26.29112 -24.92829 -24.01879 -22.95436 -22.03127 -19.78012 -19.10991 -17.98760 -17.56652 -16.93784 -16.32293 -16.16290 -15.73762 -15.71383 -15.08347 -14.85440 -14.39851 -14.20155 -14.01436 -13.75868 -13.61363 -13.27409 -12.99667 -12.55484 -12.46314 -12.15798 -12.09076 -11.52492 -11.37470 -11.30895 -11.24021 -11.10213 -10.91871 -10.34684 -10.31060 -9.51777 -9.45632 -9.28758 -9.23602 -9.05565 -8.49628 -8.01306 -7.71475 -6.36520 -3.92965 0.47126 1.09433 1.22007 1.53593 1.90492 2.88275 3.12810 3.23972 3.30699 3.70675 3.80067 4.00561 4.08532 4.14289 4.58407 4.69704 4.74329 4.94012 5.05487 5.07322 5.11695 5.24684 5.40702 5.62227 5.73289 5.74095 5.79928 5.92351 5.97219 6.02420 6.24165 6.31862 6.40049 6.70386 6.78753 7.14309 7.53520 7.92589 8.08262 8.42931 9.13273 9.35377 9.90093 10.68452 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.017543 B = 0.002901 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.737610 B = 9650.372427 C =10532.216125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.443 5.443 3 C -0.305 4.305 4 H 0.099 0.901 5 C 0.031 3.969 6 N -0.880 5.880 7 Si 0.926 3.074 8 H -0.268 1.268 9 H -0.280 1.280 10 H -0.281 1.281 11 C 0.452 3.548 12 O -0.579 6.579 13 C -0.065 4.065 14 C 0.107 3.893 15 N -0.465 5.465 16 C 0.109 3.891 17 C -0.020 4.020 18 C -0.056 4.056 19 C -0.154 4.154 20 C 0.097 3.903 21 F -0.142 7.142 22 C -0.155 4.155 23 C -0.078 4.078 24 C -0.266 4.266 25 S 0.141 5.859 26 H 0.054 0.946 27 H 0.076 0.924 28 H 0.026 0.974 29 H 0.268 0.732 30 H 0.100 0.900 31 H 0.112 0.888 32 H 0.146 0.854 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.134 0.866 36 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.194 -17.565 -1.093 17.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.162 5.162 3 C -0.433 4.433 4 H 0.116 0.884 5 C -0.172 4.172 6 N -0.520 5.520 7 Si 0.752 3.248 8 H -0.192 1.192 9 H -0.206 1.206 10 H -0.207 1.207 11 C 0.238 3.762 12 O -0.463 6.463 13 C -0.108 4.108 14 C -0.173 4.173 15 N -0.178 5.178 16 C -0.022 4.022 17 C -0.023 4.023 18 C -0.075 4.075 19 C -0.172 4.172 20 C 0.077 3.923 21 F -0.120 7.120 22 C -0.173 4.173 23 C -0.097 4.097 24 C -0.406 4.406 25 S 0.399 5.601 26 H 0.073 0.927 27 H 0.095 0.905 28 H 0.045 0.955 29 H 0.078 0.922 30 H 0.119 0.881 31 H 0.130 0.870 32 H 0.163 0.837 33 H 0.156 0.844 34 H 0.155 0.845 35 H 0.152 0.848 36 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 2.327 -17.054 -1.580 17.285 hybrid contribution 0.677 0.397 0.901 1.195 sum 3.004 -16.657 -0.679 16.940 Atomic orbital electron populations 1.21542 0.81118 1.00087 1.00823 1.43532 1.05502 1.04500 1.62631 1.19682 1.00682 0.83866 1.39098 0.88351 1.25352 0.96620 1.00174 0.95067 1.69990 1.19195 1.29619 1.33162 0.85868 0.79207 0.81402 0.78277 1.19199 1.20613 1.20703 1.19603 0.87987 0.84089 0.84535 1.90560 1.13640 1.86791 1.55334 1.20355 0.95553 0.89822 1.05116 1.26274 1.00594 0.99873 0.90535 1.66043 1.11425 1.08681 1.31630 1.18582 0.97227 0.94956 0.91467 1.18133 0.97294 0.95463 0.91449 1.21240 0.97556 0.98161 0.90583 1.21147 0.98652 0.96493 1.00956 1.17814 0.96272 0.93865 0.84360 1.91490 1.83182 1.79240 1.58131 1.20976 1.02975 1.02624 0.90773 1.20965 0.95250 0.94287 0.99195 1.26890 1.09975 1.07791 0.95948 1.83809 1.37997 1.25621 1.12713 0.92742 0.90476 0.95532 0.92226 0.88147 0.86973 0.83659 0.84407 0.84517 0.84779 0.80739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.29 8.44 59.85 0.51 2.79 16 2 N -0.44 -11.04 3.01 -122.19 -0.37 -11.41 16 3 C -0.31 -8.39 9.24 -14.94 -0.14 -8.53 16 4 H 0.10 2.85 7.45 -52.49 -0.39 2.46 16 5 C 0.03 0.81 5.04 -17.47 -0.09 0.73 16 6 N -0.88 -23.09 10.83 55.50 0.60 -22.48 16 7 Si 0.93 20.53 29.57 -169.99 -5.03 15.50 16 8 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 9 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 C 0.45 10.74 7.62 -10.99 -0.08 10.66 16 12 O -0.58 -15.93 15.75 5.55 0.09 -15.84 16 13 C -0.06 -1.15 4.89 -29.03 -0.14 -1.30 16 14 C 0.11 1.89 5.86 -13.54 -0.08 1.81 16 15 N -0.46 -8.42 9.92 -8.42 -0.08 -8.50 16 16 C 0.11 1.70 6.65 -84.61 -0.56 1.14 16 17 C -0.02 -0.28 5.88 -104.89 -0.62 -0.89 16 18 C -0.06 -0.75 9.63 -39.26 -0.38 -1.13 16 19 C -0.15 -1.78 10.01 -39.56 -0.40 -2.18 16 20 C 0.10 1.10 7.30 -39.36 -0.29 0.81 16 21 F -0.14 -1.65 17.26 2.25 0.04 -1.61 16 22 C -0.15 -1.56 10.01 -39.56 -0.40 -1.95 16 23 C -0.08 -0.83 9.48 -39.25 -0.37 -1.20 16 24 C -0.27 -3.54 10.62 29.52 0.31 -3.23 16 25 S 0.14 2.03 23.16 -107.50 -2.49 -0.46 16 26 H 0.05 1.19 7.83 -51.93 -0.41 0.78 16 27 H 0.08 1.73 6.80 -51.93 -0.35 1.38 16 28 H 0.03 0.44 6.61 -51.93 -0.34 0.10 16 29 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 30 H 0.10 1.45 7.41 -51.93 -0.38 1.07 16 31 H 0.11 1.87 8.11 -51.93 -0.42 1.45 16 32 H 0.15 2.04 7.70 -52.49 -0.40 1.64 16 33 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 35 H 0.13 1.08 6.66 -52.48 -0.35 0.73 16 36 H 0.18 1.67 6.89 -52.48 -0.36 1.30 16 LS Contribution 331.38 15.07 4.99 4.99 Total: -1.00 -32.23 331.38 -8.36 -40.59 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -3.39 Total: 1.71 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -2.72 Total: -2.48 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: 0.15 Total: -42.40 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: 0.09 Total: -15.84 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.03 Total: 15.50 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -2.49 Total: -0.46 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.23 -8.36 -40.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184722379.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.849 kcal (2) G-P(sol) polarization free energy of solvation -32.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds