Wall clock time and date at job start Tue Mar 31 2020 12:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37094 * 120.00194 * 2 1 4 4 H 1.08000 * 119.99802 * 204.39852 * 3 2 1 5 5 C 1.38947 * 119.99832 * 24.39338 * 3 2 1 6 6 N 1.31405 * 120.00251 * 12.65793 * 5 3 2 7 7 Si 1.86807 * 119.99899 * 192.65878 * 5 3 2 8 8 H 1.48500 * 109.46822 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.47238 * 120.00149 * 7 5 3 10 10 H 1.48504 * 109.46900 * 240.00042 * 7 5 3 11 11 C 1.34778 * 119.99792 * 179.97438 * 2 1 3 12 12 O 1.21292 * 119.99626 * 180.02562 * 11 2 1 13 13 C 1.50699 * 120.00331 * 359.97438 * 11 2 1 14 14 C 1.50701 * 109.47281 * 179.97438 * 13 11 2 15 15 N 1.28811 * 124.75409 * 90.32452 * 14 13 11 16 16 C 1.32518 * 117.11517 * 180.19133 * 15 14 13 17 17 C 1.48366 * 122.95387 * 179.75049 * 16 15 14 18 18 C 1.39355 * 120.10247 * 359.71016 * 17 16 15 19 19 C 1.37980 * 119.90370 * 180.02562 * 18 17 16 20 20 C 1.38543 * 120.09850 * 359.97438 * 19 18 17 21 21 F 1.35097 * 119.90331 * 180.02562 * 20 19 18 22 22 C 1.38544 * 120.19629 * 0.27672 * 20 19 18 23 23 C 1.37989 * 120.09335 * 359.44737 * 22 20 19 24 24 C 1.34817 * 114.08211 * 359.48383 * 16 15 14 25 25 S 1.70915 * 124.75756 * 269.97581 * 14 13 11 26 26 H 1.09002 * 109.46949 * 265.86510 * 1 2 3 27 27 H 1.09004 * 109.47011 * 25.86489 * 1 2 3 28 28 H 1.09006 * 109.47231 * 145.86583 * 1 2 3 29 29 H 0.97000 * 120.00304 * 179.97438 * 6 5 3 30 30 H 1.08998 * 109.46983 * 59.99864 * 13 11 2 31 31 H 1.09006 * 109.47076 * 300.00391 * 13 11 2 32 32 H 1.07999 * 120.04705 * 0.04333 * 18 17 16 33 33 H 1.07997 * 119.95420 * 179.97438 * 19 18 17 34 34 H 1.07993 * 119.94795 * 179.72369 * 22 20 19 35 35 H 1.08006 * 120.04661 * 180.28911 * 23 22 20 36 36 H 1.08003 * 126.06345 * 180.26938 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1581 1.2289 -0.3864 5 6 1.5488 2.3368 0.4970 6 7 0.4348 2.2491 1.1884 7 14 2.3235 4.0073 0.1822 8 1 3.5644 3.8350 -0.6151 9 1 1.3682 4.8629 -0.5665 10 1 2.6541 4.6518 1.4786 11 6 2.1388 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0010 13 6 1.3854 -2.4723 0.0017 14 6 2.3647 -3.6178 0.0014 15 7 2.8381 -4.1793 1.0596 16 6 3.6952 -5.1745 0.8833 17 6 4.3230 -5.9081 2.0098 18 6 4.0249 -5.5571 3.3250 19 6 4.6115 -6.2417 4.3695 20 6 5.4955 -7.2771 4.1123 21 9 6.0672 -7.9451 5.1379 22 6 5.7988 -7.6260 2.8063 23 6 5.2124 -6.9505 1.7556 24 6 3.9420 -5.4654 -0.4098 25 16 2.9963 -4.3594 -1.4029 26 1 -0.3633 -0.0741 1.0250 27 1 -0.3633 0.9248 -0.4483 28 1 -0.3634 -0.8507 -0.5767 29 1 0.0149 3.0516 1.5356 30 1 0.7584 -2.5307 -0.8880 31 1 0.7590 -2.5295 0.8920 32 1 3.3354 -4.7506 3.5265 33 1 4.3814 -5.9702 5.3891 34 1 6.4918 -8.4308 2.6103 35 1 5.4458 -7.2263 0.7378 36 1 4.6024 -6.2392 -0.7726 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184722379.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:10 Heat of formation + Delta-G solvation = -19.832327 kcal Electronic energy + Delta-G solvation = -22907.155912 eV Core-core repulsion = 19204.265185 eV Total energy + Delta-G solvation = -3702.890727 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.074 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.93551 -41.26019 -40.31997 -39.26373 -36.69009 -34.07842 -33.48856 -32.24580 -31.30984 -29.29829 -28.08857 -26.52794 -25.37558 -23.85231 -23.19096 -21.11544 -20.55815 -19.05069 -18.89773 -18.57588 -17.97008 -17.25173 -16.70734 -16.68294 -16.61762 -16.38260 -15.95000 -15.68179 -15.36262 -14.88608 -14.62661 -14.37379 -14.18865 -14.03786 -13.72541 -13.47967 -13.37005 -13.22716 -13.11468 -12.88134 -12.65317 -12.40186 -12.29578 -12.11987 -11.99660 -11.01574 -10.71919 -10.62355 -10.39006 -10.26867 -10.14370 -9.67459 -9.04554 -8.34912 -6.00015 -0.54928 0.13260 0.23350 0.42262 0.75603 1.35368 1.41013 1.54449 1.78555 1.98929 2.27911 2.73017 2.89932 3.07338 3.17164 3.21744 3.66866 3.72613 3.90585 4.00228 4.14110 4.19723 4.28321 4.32416 4.52841 4.58398 4.68277 4.81603 4.94592 5.02082 5.04875 5.08472 5.28576 5.39519 5.44590 5.44832 5.83022 6.09152 6.46765 6.77322 7.15344 7.44143 7.99554 8.68130 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.017543 B = 0.002901 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.737610 B = 9650.372427 C =10532.216125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.460 5.460 3 C -0.342 4.342 4 H 0.070 0.930 5 C -0.001 4.001 6 N -0.895 5.895 7 Si 0.987 3.013 8 H -0.274 1.274 9 H -0.263 1.263 10 H -0.278 1.278 11 C 0.445 3.555 12 O -0.626 6.626 13 C -0.052 4.052 14 C 0.063 3.937 15 N -0.492 5.492 16 C 0.081 3.919 17 C -0.040 4.040 18 C -0.077 4.077 19 C -0.157 4.157 20 C 0.088 3.912 21 F -0.144 7.144 22 C -0.144 4.144 23 C -0.069 4.069 24 C -0.248 4.248 25 S 0.178 5.822 26 H 0.043 0.957 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.274 0.726 30 H 0.137 0.863 31 H 0.120 0.880 32 H 0.125 0.875 33 H 0.148 0.852 34 H 0.169 0.831 35 H 0.167 0.833 36 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.618 -19.330 -2.253 19.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.179 5.179 3 C -0.470 4.470 4 H 0.088 0.912 5 C -0.203 4.203 6 N -0.533 5.533 7 Si 0.811 3.189 8 H -0.199 1.199 9 H -0.187 1.187 10 H -0.204 1.204 11 C 0.233 3.767 12 O -0.513 6.513 13 C -0.095 4.095 14 C -0.215 4.215 15 N -0.207 5.207 16 C -0.049 4.049 17 C -0.043 4.043 18 C -0.096 4.096 19 C -0.175 4.175 20 C 0.069 3.931 21 F -0.122 7.122 22 C -0.163 4.163 23 C -0.088 4.088 24 C -0.387 4.387 25 S 0.435 5.565 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.155 0.845 31 H 0.138 0.862 32 H 0.143 0.857 33 H 0.166 0.834 34 H 0.186 0.814 35 H 0.184 0.816 36 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 2.706 -18.824 -2.732 19.213 hybrid contribution 0.604 0.851 1.283 1.654 sum 3.310 -17.973 -1.449 18.333 Atomic orbital electron populations 1.21533 0.79051 1.01329 1.00831 1.43803 1.06907 1.04352 1.62810 1.19605 1.00395 0.85959 1.41046 0.91223 1.26067 0.97047 1.02886 0.94331 1.70058 1.19667 1.30724 1.32888 0.84969 0.78411 0.77381 0.78130 1.19864 1.18741 1.20415 1.20550 0.87841 0.85668 0.82622 1.90511 1.15968 1.87835 1.56958 1.20220 0.95437 0.86674 1.07180 1.26236 1.02168 1.00972 0.92168 1.66008 1.12191 1.09631 1.32865 1.18928 0.97748 0.95201 0.93068 1.18313 0.98520 0.96662 0.90812 1.21146 0.98374 0.98571 0.91545 1.21225 0.98644 0.96566 1.01112 1.17985 0.96284 0.93810 0.85068 1.91488 1.83159 1.79194 1.58380 1.21326 1.02501 1.02679 0.89765 1.21267 0.93774 0.92814 1.00969 1.27413 1.08923 1.07481 0.94903 1.83564 1.37240 1.24780 1.10909 0.93844 0.92141 0.90697 0.91671 0.84524 0.86247 0.85735 0.83391 0.81365 0.81567 0.76585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.86 8.44 127.77 1.08 5.94 16 2 N -0.46 -23.43 3.01 -658.89 -1.98 -25.42 16 3 C -0.34 -19.43 9.24 84.04 0.78 -18.65 16 4 H 0.07 4.26 7.45 -2.91 -0.02 4.24 16 5 C 0.00 -0.07 5.04 84.93 0.43 0.36 16 6 N -0.89 -47.23 10.83 21.66 0.23 -46.99 16 7 Si 0.99 42.49 29.57 68.60 2.03 44.52 16 8 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 9 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 10 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 11 C 0.45 21.61 7.62 87.66 0.67 22.28 16 12 O -0.63 -35.69 15.75 -3.07 -0.05 -35.74 16 13 C -0.05 -1.84 4.89 29.10 0.14 -1.69 16 14 C 0.06 2.21 5.86 88.55 0.52 2.73 16 15 N -0.49 -18.04 9.92 -180.56 -1.79 -19.83 16 16 C 0.08 2.46 6.65 40.95 0.27 2.73 16 17 C -0.04 -1.05 5.88 -20.04 -0.12 -1.17 16 18 C -0.08 -2.11 9.63 22.48 0.22 -1.90 16 19 C -0.16 -3.62 10.01 22.28 0.22 -3.40 16 20 C 0.09 1.87 7.30 22.42 0.16 2.03 16 21 F -0.14 -3.11 17.26 44.97 0.78 -2.33 16 22 C -0.14 -2.47 10.01 22.28 0.22 -2.24 16 23 C -0.07 -1.27 9.48 22.48 0.21 -1.06 16 24 C -0.25 -5.94 10.62 67.03 0.71 -5.23 16 25 S 0.18 4.80 23.16 -56.49 -1.31 3.49 16 26 H 0.04 1.90 7.83 -2.39 -0.02 1.88 16 27 H 0.06 2.72 6.80 -2.39 -0.02 2.70 16 28 H 0.07 2.37 6.61 -2.38 -0.02 2.35 16 29 H 0.27 13.49 8.31 -92.71 -0.77 12.72 16 30 H 0.14 3.68 7.41 -2.39 -0.02 3.66 16 31 H 0.12 3.97 8.11 -2.38 -0.02 3.95 16 32 H 0.12 3.82 7.70 -2.91 -0.02 3.80 16 33 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 34 H 0.17 1.80 8.06 -2.91 -0.02 1.78 16 35 H 0.17 1.88 6.66 -2.91 -0.02 1.86 16 36 H 0.22 3.09 6.89 -2.91 -0.02 3.07 16 Total: -1.00 -73.41 331.38 4.56 -68.85 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 1.13 Total: 12.73 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: 5.52 Total: 0.72 kcal Atomic # 7 Polarization: -88.70 SS G_CDS: -3.54 Total: -92.24 kcal Atomic # 8 Polarization: -35.69 SS G_CDS: -0.05 Total: -35.74 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.78 Total: -2.33 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 16 Polarization: 4.80 SS G_CDS: -1.31 Total: 3.49 kcal Total: -73.41 4.56 -68.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184722379.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.015 kcal (2) G-P(sol) polarization free energy of solvation -73.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds