Wall clock time and date at job start Tue Mar 31 2020 12:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99952 * 2 1 3 5 5 H 1.08003 * 120.00271 * 119.99914 * 4 2 1 6 6 C 1.37886 * 119.99979 * 300.00171 * 4 2 1 7 7 N 1.31509 * 120.00076 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99822 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46938 * 60.00034 * 8 6 4 10 10 H 1.48500 * 109.46921 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46946 * 299.99979 * 8 6 4 12 12 N 1.46492 * 109.47363 * 239.99860 * 2 1 3 13 13 C 1.34781 * 119.99920 * 84.99933 * 12 2 1 14 14 O 1.21627 * 119.99738 * 0.02562 * 13 12 2 15 15 C 1.47304 * 119.99784 * 179.97438 * 13 12 2 16 16 C 1.35179 * 122.42664 * 179.73612 * 15 13 12 17 17 S 1.71010 * 109.11414 * 179.86303 * 16 15 13 18 18 C 1.75991 * 90.57955 * 0.33319 * 17 16 15 19 19 C 1.47870 * 125.32202 * 179.82714 * 18 17 16 20 20 C 1.39531 * 120.15845 * 179.70204 * 19 18 17 21 21 C 1.37939 * 119.88466 * 179.67704 * 20 19 18 22 22 C 1.38397 * 120.19679 * 0.61668 * 21 20 19 23 23 C 1.38262 * 120.31025 * 359.67830 * 22 21 20 24 24 C 1.38257 * 120.11417 * 359.97438 * 23 22 21 25 25 F 1.35100 * 120.10046 * 180.02562 * 24 23 22 26 26 N 1.29857 * 109.36305 * 359.80280 * 18 17 16 27 27 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 29 29 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 30 30 H 0.96999 * 120.00100 * 180.02562 * 7 6 4 31 31 H 0.96998 * 120.00176 * 265.00572 * 12 2 1 32 32 H 1.07998 * 125.44184 * 359.97438 * 16 15 13 33 33 H 1.08008 * 120.05797 * 359.97438 * 20 19 18 34 34 H 1.08003 * 119.90352 * 180.31486 * 21 20 19 35 35 H 1.07995 * 119.84611 * 179.69892 * 22 21 20 36 36 H 1.08000 * 119.94571 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.8074 -1.1189 4.0078 10 1 1.8277 -0.4192 5.2205 11 1 1.8279 -2.5198 4.0082 12 7 2.0184 -0.6906 -1.1961 13 6 2.1472 -0.0182 -2.3571 14 8 1.8583 1.1620 -2.4116 15 6 2.6388 -0.7125 -3.5596 16 6 2.7817 -0.0878 -4.7498 17 16 3.3749 -1.2047 -5.9009 18 6 3.3860 -2.4780 -4.6861 19 6 3.8064 -3.8767 -4.9174 20 6 3.7779 -4.7994 -3.8711 21 6 4.1650 -6.1043 -4.0948 22 6 4.5935 -6.4978 -5.3506 23 6 4.6308 -5.5887 -6.3917 24 6 4.2390 -4.2793 -6.1836 25 9 4.2751 -3.3914 -7.2012 26 7 2.9678 -1.9972 -3.5546 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 0.7094 1.1618 3.4844 31 1 2.2491 -1.6317 -1.1525 32 1 2.5589 0.9513 -4.9424 33 1 3.4488 -4.4936 -2.8889 34 1 4.1382 -6.8200 -3.2864 35 1 4.8999 -7.5197 -5.5182 36 1 4.9659 -5.9022 -7.3694 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194628701.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:20 Heat of formation + Delta-G solvation = -12.255617 kcal Electronic energy + Delta-G solvation = -23159.328945 eV Core-core repulsion = 19456.766769 eV Total energy + Delta-G solvation = -3702.562176 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.074 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.37587 -40.23946 -39.15595 -37.92481 -34.82126 -32.72317 -32.32022 -30.94792 -29.56930 -28.96810 -25.75654 -25.22328 -23.97921 -23.00102 -21.41054 -20.17655 -19.27163 -18.73574 -17.83657 -16.82754 -16.54772 -16.45870 -16.12211 -15.58389 -15.18202 -14.94695 -14.81805 -14.38642 -14.04459 -13.70360 -13.58824 -13.46786 -13.04261 -12.66852 -12.36449 -12.16333 -11.88438 -11.64280 -11.48442 -11.08271 -10.94506 -10.74562 -10.33835 -10.21567 -10.20209 -9.98572 -9.48579 -9.29768 -9.19927 -9.03764 -8.53775 -8.41557 -7.88420 -6.10304 -4.19304 0.00605 0.81557 1.07559 1.11403 1.58882 2.28861 3.27754 3.28970 3.32490 3.34151 3.53956 3.81057 3.94367 4.15425 4.34027 4.41554 4.62446 4.73393 4.89915 4.98567 5.21962 5.28911 5.38603 5.48124 5.61691 5.70455 5.91953 6.00018 6.08267 6.43617 6.84093 6.98549 7.15523 7.35970 7.44669 7.60870 7.72957 7.93374 8.15593 8.67619 8.77844 9.08872 9.47640 10.95882 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.015579 B = 0.003388 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.897032 B = 8261.351107 C = 9812.398473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.050 0.950 4 C -0.533 4.533 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.685 5.685 13 C 0.574 3.426 14 O -0.549 6.549 15 C 0.025 3.975 16 C -0.226 4.226 17 S 0.191 5.809 18 C 0.071 3.929 19 C -0.048 4.048 20 C -0.046 4.046 21 C -0.127 4.127 22 C -0.081 4.081 23 C -0.151 4.151 24 C 0.109 3.891 25 F -0.128 7.128 26 N -0.422 5.422 27 H 0.027 0.973 28 H 0.092 0.908 29 H 0.015 0.985 30 H 0.265 0.735 31 H 0.398 0.602 32 H 0.191 0.809 33 H 0.149 0.851 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.267 -14.327 -19.170 25.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.161 3.839 3 H 0.068 0.932 4 C -0.572 4.572 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.332 5.332 13 C 0.355 3.645 14 O -0.428 6.428 15 C -0.111 4.111 16 C -0.368 4.368 17 S 0.450 5.550 18 C -0.204 4.204 19 C -0.053 4.053 20 C -0.067 4.067 21 C -0.146 4.146 22 C -0.100 4.100 23 C -0.170 4.170 24 C 0.087 3.913 25 F -0.106 7.106 26 N -0.137 5.137 27 H 0.046 0.954 28 H 0.110 0.890 29 H 0.034 0.966 30 H 0.075 0.925 31 H 0.231 0.769 32 H 0.208 0.792 33 H 0.167 0.833 34 H 0.156 0.844 35 H 0.154 0.846 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.159 -13.489 -19.630 24.870 hybrid contribution 0.062 -0.160 1.420 1.430 sum 7.222 -13.648 -18.210 23.875 Atomic orbital electron populations 1.22084 0.98250 0.99256 1.00972 1.18830 0.91179 0.94041 0.79807 0.93194 1.21179 1.32498 1.13284 0.90212 0.92001 1.24883 0.94793 0.94958 0.99026 1.69890 1.35874 1.22425 1.23998 0.86487 0.79184 0.79597 0.81710 1.20157 1.21129 1.20109 1.46417 1.62948 1.14087 1.09698 1.17166 0.79016 0.86099 0.82243 1.90768 1.52358 1.15021 1.84680 1.20588 1.05285 0.88823 0.96400 1.26783 1.05847 1.07206 0.96979 1.84057 1.57657 0.99976 1.13347 1.25507 1.05529 0.97493 0.91920 1.17805 1.04377 0.89902 0.93226 1.21323 0.94915 0.91698 0.98782 1.21273 0.99592 0.96032 0.97677 1.21191 0.96980 0.99617 0.92186 1.21029 1.03463 0.91154 1.01364 1.17713 1.01944 0.87962 0.83638 1.91467 1.93970 1.67296 1.57891 1.66931 1.11549 1.11220 1.24002 0.95357 0.88980 0.96618 0.92509 0.76855 0.79203 0.83288 0.84436 0.84567 0.84110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.77 9.26 37.16 0.34 -3.43 16 2 C 0.26 6.95 2.56 -69.08 -0.18 6.77 16 3 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 4 C -0.53 -14.51 8.73 -34.44 -0.30 -14.81 16 5 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 6 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 7 N -0.88 -25.21 11.32 55.43 0.63 -24.58 16 8 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 12 N -0.69 -15.63 5.07 -56.05 -0.28 -15.91 16 13 C 0.57 12.71 7.76 -12.57 -0.10 12.61 16 14 O -0.55 -13.74 16.31 5.25 0.09 -13.65 16 15 C 0.03 0.46 6.64 -84.93 -0.56 -0.11 16 16 C -0.23 -3.43 10.56 29.64 0.31 -3.12 16 17 S 0.19 2.34 20.74 -107.50 -2.23 0.11 16 18 C 0.07 0.98 7.32 -14.45 -0.11 0.88 16 19 C -0.05 -0.56 5.88 -104.92 -0.62 -1.17 16 20 C -0.05 -0.46 9.67 -39.21 -0.38 -0.84 16 21 C -0.13 -0.94 10.03 -39.63 -0.40 -1.34 16 22 C -0.08 -0.50 10.04 -39.51 -0.40 -0.90 16 23 C -0.15 -1.10 10.01 -39.57 -0.40 -1.49 16 24 C 0.11 1.08 7.28 -39.02 -0.28 0.79 16 25 F -0.13 -1.31 14.67 2.25 0.03 -1.28 16 26 N -0.42 -6.93 9.61 -8.11 -0.08 -7.01 16 27 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.09 2.53 6.07 -51.93 -0.32 2.21 16 29 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.40 8.31 8.01 -40.82 -0.33 7.98 16 32 H 0.19 2.67 7.99 -52.49 -0.42 2.25 16 33 H 0.15 1.58 7.81 -52.48 -0.41 1.17 16 34 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 35 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 36 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 LS Contribution 333.60 15.07 5.03 5.03 Total: -1.00 -31.74 333.60 -8.51 -40.25 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -3.52 Total: 5.63 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -3.15 Total: -4.44 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: 0.27 Total: -47.51 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: 0.09 Total: -13.65 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.03 Total: -1.28 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -2.23 Total: 0.11 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.74 -8.51 -40.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194628701.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.995 kcal (2) G-P(sol) polarization free energy of solvation -31.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds