Wall clock time and date at job start Tue Mar 31 2020 12:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99952 * 2 1 3 5 5 H 1.08003 * 120.00271 * 119.99914 * 4 2 1 6 6 C 1.37886 * 119.99979 * 300.00171 * 4 2 1 7 7 N 1.31509 * 120.00076 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99822 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46938 * 60.00034 * 8 6 4 10 10 H 1.48500 * 109.46921 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46946 * 299.99979 * 8 6 4 12 12 N 1.46492 * 109.47363 * 239.99860 * 2 1 3 13 13 C 1.34781 * 119.99920 * 84.99933 * 12 2 1 14 14 O 1.21627 * 119.99738 * 0.02562 * 13 12 2 15 15 C 1.47304 * 119.99784 * 179.97438 * 13 12 2 16 16 C 1.35179 * 122.42664 * 179.73612 * 15 13 12 17 17 S 1.71010 * 109.11414 * 179.86303 * 16 15 13 18 18 C 1.75991 * 90.57955 * 0.33319 * 17 16 15 19 19 C 1.47870 * 125.32202 * 179.82714 * 18 17 16 20 20 C 1.39531 * 120.15845 * 179.70204 * 19 18 17 21 21 C 1.37939 * 119.88466 * 179.67704 * 20 19 18 22 22 C 1.38397 * 120.19679 * 0.61668 * 21 20 19 23 23 C 1.38262 * 120.31025 * 359.67830 * 22 21 20 24 24 C 1.38257 * 120.11417 * 359.97438 * 23 22 21 25 25 F 1.35100 * 120.10046 * 180.02562 * 24 23 22 26 26 N 1.29857 * 109.36305 * 359.80280 * 18 17 16 27 27 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 29 29 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 30 30 H 0.96999 * 120.00100 * 180.02562 * 7 6 4 31 31 H 0.96998 * 120.00176 * 265.00572 * 12 2 1 32 32 H 1.07998 * 125.44184 * 359.97438 * 16 15 13 33 33 H 1.08008 * 120.05797 * 359.97438 * 20 19 18 34 34 H 1.08003 * 119.90352 * 180.31486 * 21 20 19 35 35 H 1.07995 * 119.84611 * 179.69892 * 22 21 20 36 36 H 1.08000 * 119.94571 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.8074 -1.1189 4.0078 10 1 1.8277 -0.4192 5.2205 11 1 1.8279 -2.5198 4.0082 12 7 2.0184 -0.6906 -1.1961 13 6 2.1472 -0.0182 -2.3571 14 8 1.8583 1.1620 -2.4116 15 6 2.6388 -0.7125 -3.5596 16 6 2.7817 -0.0878 -4.7498 17 16 3.3749 -1.2047 -5.9009 18 6 3.3860 -2.4780 -4.6861 19 6 3.8064 -3.8767 -4.9174 20 6 3.7779 -4.7994 -3.8711 21 6 4.1650 -6.1043 -4.0948 22 6 4.5935 -6.4978 -5.3506 23 6 4.6308 -5.5887 -6.3917 24 6 4.2390 -4.2793 -6.1836 25 9 4.2751 -3.3914 -7.2012 26 7 2.9678 -1.9972 -3.5546 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 0.7094 1.1618 3.4844 31 1 2.2491 -1.6317 -1.1525 32 1 2.5589 0.9513 -4.9424 33 1 3.4488 -4.4936 -2.8889 34 1 4.1382 -6.8200 -3.2864 35 1 4.8999 -7.5197 -5.5182 36 1 4.9659 -5.9022 -7.3694 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194628701.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:19 Heat of formation + Delta-G solvation = -32.508565 kcal Electronic energy + Delta-G solvation = -23160.207179 eV Core-core repulsion = 19456.766769 eV Total energy + Delta-G solvation = -3703.440410 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.074 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.12266 -41.56820 -40.12534 -39.29630 -36.81820 -34.37579 -33.57387 -31.58364 -31.09794 -30.48139 -27.40708 -26.89868 -25.13766 -23.72893 -22.83020 -21.79302 -20.67432 -20.06039 -18.68345 -18.45377 -17.59889 -17.26617 -17.19557 -16.94860 -16.89168 -16.37672 -16.17612 -15.47008 -15.16855 -15.02507 -14.80156 -14.45077 -14.40866 -14.34511 -13.76698 -13.38370 -13.10687 -12.96513 -12.89830 -12.77712 -12.69895 -12.31314 -12.17967 -12.14254 -11.20452 -11.20129 -11.17549 -11.01029 -10.62600 -10.49635 -9.90546 -9.83542 -9.32213 -8.19945 -6.38094 -0.95769 0.05269 0.06638 0.21545 0.42916 1.07837 1.43903 1.46893 1.54841 2.28102 2.30998 2.46545 2.66470 2.74464 3.08531 3.10206 3.56129 3.78716 4.03774 4.07286 4.16357 4.31677 4.34166 4.59360 4.70751 4.83980 4.87138 5.02375 5.05449 5.08920 5.31770 5.35442 5.44786 5.52954 5.61466 5.81488 5.84551 6.03559 6.26166 6.66672 6.84116 7.22914 7.38912 8.86665 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.015579 B = 0.003388 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.897032 B = 8261.351107 C = 9812.398473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.269 3.731 3 H 0.003 0.997 4 C -0.551 4.551 5 H 0.070 0.930 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.976 3.024 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.263 1.263 12 N -0.685 5.685 13 C 0.571 3.429 14 O -0.587 6.587 15 C -0.002 4.002 16 C -0.234 4.234 17 S 0.271 5.729 18 C 0.068 3.932 19 C -0.079 4.079 20 C -0.061 4.061 21 C -0.124 4.124 22 C -0.063 4.063 23 C -0.145 4.145 24 C 0.098 3.902 25 F -0.133 7.133 26 N -0.448 5.448 27 H 0.039 0.961 28 H 0.073 0.927 29 H 0.012 0.988 30 H 0.267 0.733 31 H 0.407 0.593 32 H 0.196 0.804 33 H 0.134 0.866 34 H 0.162 0.838 35 H 0.176 0.824 36 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.818 -17.921 -20.639 28.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.166 3.834 3 H 0.021 0.979 4 C -0.589 4.589 5 H 0.088 0.912 6 C -0.184 4.184 7 N -0.554 5.554 8 Si 0.800 3.200 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.187 1.187 12 N -0.332 5.332 13 C 0.355 3.645 14 O -0.469 6.469 15 C -0.138 4.138 16 C -0.377 4.377 17 S 0.531 5.469 18 C -0.208 4.208 19 C -0.084 4.084 20 C -0.082 4.082 21 C -0.142 4.142 22 C -0.082 4.082 23 C -0.163 4.163 24 C 0.077 3.923 25 F -0.112 7.112 26 N -0.163 5.163 27 H 0.058 0.942 28 H 0.091 0.909 29 H 0.031 0.969 30 H 0.077 0.923 31 H 0.242 0.758 32 H 0.213 0.787 33 H 0.152 0.848 34 H 0.179 0.821 35 H 0.193 0.807 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 8.720 -17.108 -21.134 28.555 hybrid contribution -0.348 0.836 1.703 1.928 sum 8.372 -16.273 -19.431 26.692 Atomic orbital electron populations 1.21905 0.97917 0.99519 0.99841 1.18482 0.91417 0.92032 0.81433 0.97877 1.21466 1.33006 1.13715 0.90759 0.91167 1.25818 0.94707 0.95565 1.02284 1.70035 1.36761 1.23781 1.24868 0.85343 0.78625 0.78755 0.77295 1.19605 1.20799 1.18716 1.46193 1.63344 1.14385 1.09231 1.17689 0.77912 0.85782 0.83086 1.90724 1.53947 1.16742 1.85534 1.19998 1.08332 0.90018 0.95410 1.27009 1.05068 1.08279 0.97310 1.83752 1.55423 0.97219 1.10548 1.26038 1.03868 0.99090 0.91776 1.17932 1.06871 0.88930 0.94679 1.21365 0.95892 0.92991 0.97999 1.21594 0.98364 0.95045 0.99180 1.21678 0.94453 1.01102 0.90956 1.21429 1.02033 0.89858 1.03015 1.17935 1.02561 0.89004 0.82840 1.91439 1.94088 1.67718 1.57950 1.66856 1.13287 1.10456 1.25686 0.94207 0.90865 0.96864 0.92338 0.75757 0.78704 0.84816 0.82084 0.80671 0.81303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.13 9.26 71.98 0.67 -6.46 16 2 C 0.27 14.94 2.56 44.25 0.11 15.05 16 3 H 0.00 0.21 7.58 -2.39 -0.02 0.20 16 4 C -0.55 -30.70 8.73 25.60 0.22 -30.48 16 5 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 6 C 0.02 0.91 5.30 84.66 0.45 1.36 16 7 N -0.92 -53.62 11.32 21.45 0.24 -53.37 16 8 Si 0.98 42.87 29.54 68.60 2.03 44.89 16 9 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 10 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 11 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 12 N -0.68 -32.79 5.07 -449.48 -2.28 -35.06 16 13 C 0.57 26.72 7.76 86.63 0.67 27.39 16 14 O -0.59 -31.22 16.31 -4.12 -0.07 -31.28 16 15 C 0.00 -0.06 6.64 40.71 0.27 0.21 16 16 C -0.23 -7.20 10.56 67.11 0.71 -6.49 16 17 S 0.27 6.31 20.74 -56.49 -1.17 5.14 16 18 C 0.07 1.86 7.32 87.54 0.64 2.50 16 19 C -0.08 -1.74 5.88 -20.06 -0.12 -1.86 16 20 C -0.06 -1.17 9.67 22.51 0.22 -0.95 16 21 C -0.12 -1.43 10.03 22.24 0.22 -1.21 16 22 C -0.06 -0.49 10.04 22.31 0.22 -0.27 16 23 C -0.14 -1.52 10.01 22.28 0.22 -1.29 16 24 C 0.10 1.71 7.28 22.63 0.16 1.87 16 25 F -0.13 -2.43 14.67 44.97 0.66 -1.77 16 26 N -0.45 -15.09 9.61 -179.58 -1.73 -16.82 16 27 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.07 4.19 6.07 -2.39 -0.01 4.18 16 29 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 31 H 0.41 17.75 8.01 -92.71 -0.74 17.00 16 32 H 0.20 5.62 7.99 -2.91 -0.02 5.60 16 33 H 0.13 2.90 7.81 -2.91 -0.02 2.88 16 34 H 0.16 1.07 8.06 -2.91 -0.02 1.04 16 35 H 0.18 0.07 8.06 -2.91 -0.02 0.04 16 36 H 0.17 0.82 8.06 -2.91 -0.02 0.79 16 Total: -1.00 -72.31 333.60 2.76 -69.54 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: 0.40 Total: 19.34 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: 4.68 Total: -0.61 kcal Atomic # 7 Polarization: -101.49 SS G_CDS: -3.76 Total: -105.25 kcal Atomic # 8 Polarization: -31.22 SS G_CDS: -0.07 Total: -31.28 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.66 Total: -1.77 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 16 Polarization: 6.31 SS G_CDS: -1.17 Total: 5.14 kcal Total: -72.31 2.76 -69.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194628701.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.036 kcal (2) G-P(sol) polarization free energy of solvation -72.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds