Wall clock time and date at job start Tue Mar 31 2020 12:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47155 * 89.99872 * 8 6 4 10 10 H 1.48499 * 109.47102 * 210.00327 * 8 6 4 11 11 H 1.48499 * 109.46909 * 330.00049 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.34777 * 120.00033 * 84.99600 * 12 2 1 14 14 O 1.21709 * 119.99899 * 0.02562 * 13 12 2 15 15 C 1.46546 * 120.00021 * 180.02562 * 13 12 2 16 16 C 1.36880 * 126.11801 * 179.71545 * 15 13 12 17 17 N 1.30641 * 114.04048 * 179.82709 * 16 15 13 18 18 C 1.30368 * 117.29300 * 0.48343 * 17 16 15 19 19 C 1.47721 * 124.75539 * 179.71120 * 18 17 16 20 20 C 1.39616 * 120.16291 * 179.74663 * 19 18 17 21 21 C 1.37902 * 119.87499 * 179.71722 * 20 19 18 22 22 C 1.38425 * 120.20821 * 0.55513 * 21 20 19 23 23 C 1.38262 * 120.32697 * 359.72253 * 22 21 20 24 24 C 1.38255 * 120.12091 * 359.97438 * 23 22 21 25 25 F 1.35096 * 120.10616 * 179.97438 * 24 23 22 26 26 S 1.70927 * 110.49317 * 359.73006 * 18 17 16 27 27 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 30 30 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 31 31 H 0.96992 * 120.00062 * 265.00053 * 12 2 1 32 32 H 1.07998 * 122.98277 * 0.02562 * 16 15 13 33 33 H 1.08001 * 120.06521 * 0.02562 * 20 19 18 34 34 H 1.07995 * 119.89999 * 180.25759 * 21 20 19 35 35 H 1.08000 * 119.83636 * 179.74039 * 22 21 20 36 36 H 1.07998 * 119.93681 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3432 -0.9495 5.1120 11 1 2.4860 -2.5663 3.7118 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8579 1.1628 -2.4117 15 6 2.6350 -0.7091 -3.5539 16 6 2.8078 -0.1528 -4.7926 17 7 3.2603 -0.9857 -5.6916 18 6 3.4770 -2.2143 -5.3130 19 6 3.9802 -3.2899 -6.1916 20 6 4.1831 -4.5741 -5.6827 21 6 4.6474 -5.5752 -6.5096 22 6 4.9238 -5.3080 -7.8394 23 6 4.7314 -4.0380 -8.3509 24 6 4.2605 -3.0256 -7.5356 25 9 4.0731 -1.7846 -8.0355 26 16 3.0969 -2.4062 -3.6576 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 0.7096 1.1617 3.4844 31 1 2.2491 -1.6316 -1.1527 32 1 2.5925 0.8835 -5.0070 33 1 3.9720 -4.7843 -4.6446 34 1 4.8006 -6.5697 -6.1174 35 1 5.2912 -6.0956 -8.4807 36 1 4.9487 -3.8366 -9.3895 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194629659.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:29 Heat of formation + Delta-G solvation = -31.892846 kcal Electronic energy + Delta-G solvation = -22862.024744 eV Core-core repulsion = 19158.611033 eV Total energy + Delta-G solvation = -3703.413710 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.074 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.84317 -41.24968 -40.37682 -39.55692 -36.81655 -34.46287 -33.61238 -31.76887 -31.43756 -29.99208 -27.39933 -27.07719 -24.37030 -23.82249 -23.33531 -21.85191 -20.92270 -20.00184 -18.66153 -18.39373 -17.61019 -17.38408 -16.89193 -16.84161 -16.74927 -16.28462 -16.19867 -15.48614 -15.35148 -15.24286 -14.85919 -14.65693 -14.47914 -14.12584 -13.78575 -13.35720 -13.06684 -12.93450 -12.84503 -12.79256 -12.73990 -12.30194 -12.21897 -12.14372 -11.31655 -11.16794 -11.04688 -10.85797 -10.63228 -10.57646 -9.96292 -9.87991 -9.33940 -8.19920 -6.38278 -1.25838 -0.06266 0.16461 0.18365 0.35895 1.41613 1.45740 1.46331 1.57195 2.09902 2.20957 2.46349 2.61894 2.75667 3.10949 3.21665 3.59908 3.76643 3.82396 4.07429 4.09279 4.27474 4.31322 4.69576 4.72770 4.86311 4.87436 5.00249 5.02791 5.10140 5.26285 5.33964 5.37636 5.48981 5.60702 5.81007 5.82749 6.03366 6.40124 6.64923 6.73231 7.17549 7.36344 8.86734 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.022803 B = 0.002862 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.620392 B = 9780.966201 C =10777.952094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.270 3.730 3 H 0.004 0.996 4 C -0.550 4.550 5 H 0.075 0.925 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.975 3.025 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.257 1.257 12 N -0.695 5.695 13 C 0.582 3.418 14 O -0.581 6.581 15 C -0.318 4.318 16 C 0.121 3.879 17 N -0.489 5.489 18 C 0.073 3.927 19 C -0.097 4.097 20 C -0.072 4.072 21 C -0.119 4.119 22 C -0.058 4.058 23 C -0.160 4.160 24 C 0.117 3.883 25 F -0.137 7.137 26 S 0.269 5.731 27 H 0.071 0.929 28 H 0.043 0.957 29 H 0.013 0.987 30 H 0.267 0.733 31 H 0.401 0.599 32 H 0.189 0.811 33 H 0.149 0.851 34 H 0.174 0.826 35 H 0.177 0.823 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.914 -19.307 -19.808 29.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.168 3.832 3 H 0.022 0.978 4 C -0.588 4.588 5 H 0.093 0.907 6 C -0.184 4.184 7 N -0.554 5.554 8 Si 0.799 3.201 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.181 1.181 12 N -0.344 5.344 13 C 0.367 3.633 14 O -0.463 6.463 15 C -0.443 4.443 16 C -0.039 4.039 17 N -0.204 5.204 18 C -0.197 4.197 19 C -0.102 4.102 20 C -0.093 4.093 21 C -0.137 4.137 22 C -0.076 4.076 23 C -0.179 4.179 24 C 0.094 3.906 25 F -0.115 7.115 26 S 0.530 5.470 27 H 0.090 0.910 28 H 0.062 0.938 29 H 0.032 0.968 30 H 0.076 0.924 31 H 0.236 0.764 32 H 0.206 0.794 33 H 0.167 0.833 34 H 0.191 0.809 35 H 0.194 0.806 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 8.729 -19.030 -19.457 28.582 hybrid contribution -0.235 1.539 0.636 1.682 sum 8.495 -17.491 -18.821 27.061 Atomic orbital electron populations 1.21925 0.97864 0.99770 0.99882 1.18487 0.91450 0.92120 0.81186 0.97779 1.21501 1.32983 1.13807 0.90559 0.90664 1.25816 0.94714 0.95567 1.02351 1.70046 1.36733 1.23842 1.24798 0.85304 0.77751 0.79295 0.77767 1.20371 1.20876 1.18072 1.46234 1.64781 1.13813 1.09529 1.17102 0.77728 0.85965 0.82457 1.90772 1.53378 1.16862 1.85323 1.26136 1.18292 0.99983 0.99861 1.22484 0.94502 1.01124 0.85788 1.66538 1.16696 1.01625 1.35507 1.25658 1.01876 0.94689 0.97437 1.18214 1.07630 0.92800 0.91543 1.21413 0.96679 0.89686 1.01503 1.21582 0.98200 1.00435 0.93492 1.21725 0.94284 0.95738 0.95898 1.21504 1.02213 0.92732 1.01404 1.18182 0.99994 0.80900 0.91487 1.91540 1.92445 1.40180 1.87326 1.83179 1.55104 1.03792 1.04918 0.90992 0.93812 0.96828 0.92394 0.76402 0.79424 0.83302 0.80853 0.80570 0.82285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.94 9.26 71.98 0.67 -6.27 16 2 C 0.27 14.22 2.56 44.24 0.11 14.33 16 3 H 0.00 0.27 7.58 -2.39 -0.02 0.25 16 4 C -0.55 -29.02 8.73 25.60 0.22 -28.80 16 5 H 0.08 3.67 7.74 -2.91 -0.02 3.65 16 6 C 0.02 0.85 5.30 84.66 0.45 1.30 16 7 N -0.92 -52.23 11.32 21.45 0.24 -51.99 16 8 Si 0.97 41.32 29.54 68.60 2.03 43.34 16 9 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 10 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 12 N -0.70 -30.27 5.07 -450.19 -2.28 -32.55 16 13 C 0.58 25.35 7.75 86.41 0.67 26.02 16 14 O -0.58 -30.03 16.53 -4.38 -0.07 -30.10 16 15 C -0.32 -11.04 6.52 24.12 0.16 -10.88 16 16 C 0.12 4.09 11.15 84.55 0.94 5.03 16 17 N -0.49 -15.63 9.02 -191.95 -1.73 -17.36 16 18 C 0.07 1.95 7.13 87.42 0.62 2.57 16 19 C -0.10 -2.04 5.88 -20.06 -0.12 -2.16 16 20 C -0.07 -0.95 9.56 22.52 0.22 -0.74 16 21 C -0.12 -0.84 10.03 22.23 0.22 -0.62 16 22 C -0.06 -0.37 10.04 22.32 0.22 -0.15 16 23 C -0.16 -1.96 10.01 22.28 0.22 -1.74 16 24 C 0.12 2.46 7.29 22.65 0.17 2.62 16 25 F -0.14 -3.71 15.70 44.97 0.71 -3.00 16 26 S 0.27 6.68 21.12 -56.49 -1.19 5.49 16 27 H 0.07 3.99 6.07 -2.39 -0.01 3.98 16 28 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.01 0.65 8.14 -2.38 -0.02 0.63 16 30 H 0.27 14.36 8.31 -92.71 -0.77 13.58 16 31 H 0.40 14.76 7.72 -92.71 -0.72 14.05 16 32 H 0.19 6.15 8.06 -2.91 -0.02 6.12 16 33 H 0.15 1.48 7.22 -2.91 -0.02 1.46 16 34 H 0.17 0.05 8.06 -2.91 -0.02 0.02 16 35 H 0.18 -0.18 8.06 -2.91 -0.02 -0.21 16 36 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 Total: -1.00 -73.31 333.97 2.90 -70.41 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 0.43 Total: 15.25 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: 4.78 Total: 0.52 kcal Atomic # 7 Polarization: -98.13 SS G_CDS: -3.77 Total: -101.90 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -0.07 Total: -30.10 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.71 Total: -3.00 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.34 kcal Atomic # 16 Polarization: 6.68 SS G_CDS: -1.19 Total: 5.49 kcal Total: -73.31 2.90 -70.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194629659.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.514 kcal (2) G-P(sol) polarization free energy of solvation -73.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds