Wall clock time and date at job start Tue Mar 31 2020 12:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46793 * 2 1 4 4 C 1.50696 * 109.46822 * 240.00166 * 2 1 3 5 5 H 1.07998 * 119.99963 * 239.99760 * 4 2 1 6 6 C 1.37876 * 120.00420 * 60.00010 * 4 2 1 7 7 N 1.31517 * 119.99594 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00500 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47211 * 59.99674 * 8 6 4 10 10 H 1.48500 * 109.47184 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.46770 * 299.99441 * 8 6 4 12 12 N 1.46493 * 109.47239 * 120.00205 * 2 1 3 13 13 C 1.34778 * 119.99967 * 274.99883 * 12 2 1 14 14 O 1.21711 * 120.00028 * 0.02562 * 13 12 2 15 15 C 1.46552 * 120.00351 * 180.02562 * 13 12 2 16 16 C 1.36874 * 126.12439 * 179.97438 * 15 13 12 17 17 N 1.30637 * 114.04525 * 179.80113 * 16 15 13 18 18 C 1.30367 * 117.29055 * 0.45210 * 17 16 15 19 19 C 1.47723 * 124.75161 * 179.83213 * 18 17 16 20 20 C 1.39623 * 120.15843 * 179.71250 * 19 18 17 21 21 C 1.37901 * 119.87122 * 179.97438 * 20 19 18 22 22 C 1.38428 * 120.21100 * 0.03137 * 21 20 19 23 23 C 1.38260 * 120.32573 * 359.66732 * 22 21 20 24 24 C 1.38258 * 120.11756 * 0.60924 * 23 22 21 25 25 F 1.35104 * 120.10120 * 179.69216 * 24 23 22 26 26 S 1.70930 * 110.49582 * 359.56385 * 18 17 16 27 27 H 1.08994 * 109.47643 * 60.00079 * 1 2 3 28 28 H 1.09007 * 109.47212 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47428 * 299.99815 * 1 2 3 30 30 H 0.97000 * 119.99962 * 179.97438 * 7 6 4 31 31 H 0.96996 * 120.00457 * 95.00134 * 12 2 1 32 32 H 1.08004 * 122.97607 * 0.03747 * 16 15 13 33 33 H 1.08001 * 120.06504 * 359.96404 * 20 19 18 34 34 H 1.08006 * 119.89429 * 180.02562 * 21 20 19 35 35 H 1.07998 * 119.83287 * 179.97438 * 22 21 20 36 36 H 1.07997 * 119.93875 * 180.32766 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6033 8 14 2.3212 -1.1203 -4.0080 9 1 1.8256 -2.5201 -4.0078 10 1 1.8257 -0.4205 -5.2205 11 1 3.8062 -1.1208 -4.0083 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8572 1.1625 2.4119 15 6 2.6362 -0.7090 3.5535 16 6 2.8148 -0.1514 4.7907 17 7 3.2596 -0.9863 5.6917 18 6 3.4822 -2.2133 5.3114 19 6 3.9874 -3.2885 6.1895 20 6 4.1860 -4.5738 5.6815 21 6 4.6583 -5.5729 6.5064 22 6 4.9355 -5.3055 7.8360 23 6 4.7478 -4.0343 8.3463 24 6 4.2694 -3.0239 7.5329 25 9 4.0802 -1.7833 8.0335 26 16 3.1004 -2.4056 3.6564 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.7086 1.1613 -3.4843 31 1 2.2491 -1.6317 1.1526 32 1 2.6030 0.8859 5.0042 33 1 3.9699 -4.7851 4.6447 34 1 4.8125 -6.5671 6.1137 35 1 5.3048 -6.0927 8.4766 36 1 4.9710 -3.8314 9.3833 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194629669.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:35 Heat of formation + Delta-G solvation = -11.735113 kcal Electronic energy + Delta-G solvation = -22861.019083 eV Core-core repulsion = 19158.479478 eV Total energy + Delta-G solvation = -3702.539605 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.074 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.97993 -40.02399 -39.21363 -38.42921 -34.90799 -32.83710 -32.45034 -31.03124 -30.00430 -28.51542 -26.02389 -25.30628 -23.37546 -22.98707 -22.05361 -20.09795 -19.63041 -18.72930 -17.65550 -17.15031 -16.39097 -16.15905 -15.85321 -15.63286 -15.32036 -14.89200 -14.84162 -14.59528 -13.99719 -13.94382 -13.79029 -13.41404 -13.15987 -12.67606 -12.49541 -12.26873 -11.79797 -11.78267 -11.47310 -11.15368 -11.01516 -10.82979 -10.40450 -10.28718 -10.09825 -9.94333 -9.49416 -9.36295 -9.24371 -9.13210 -8.62326 -8.43991 -8.04901 -6.17512 -4.27634 -0.21254 0.77356 1.01279 1.05714 1.52267 2.58014 3.22655 3.25154 3.28065 3.28977 3.63763 3.66459 3.88865 3.92053 4.32376 4.35481 4.40702 4.71456 4.79195 4.93431 5.14848 5.21944 5.31190 5.44070 5.62427 5.64735 5.75554 5.91004 6.10673 6.40318 6.75444 6.88278 7.06352 7.29424 7.42674 7.54889 7.61990 7.82717 8.07107 8.47828 8.66531 8.90349 9.39496 10.88505 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.022795 B = 0.002862 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.068897 B = 9780.003728 C =10777.309205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.265 3.735 3 H 0.053 0.947 4 C -0.538 4.538 5 H 0.061 0.939 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.698 5.698 13 C 0.578 3.422 14 O -0.535 6.535 15 C -0.270 4.270 16 C 0.109 3.891 17 N -0.458 5.458 18 C 0.061 3.939 19 C -0.061 4.061 20 C -0.072 4.072 21 C -0.129 4.129 22 C -0.077 4.077 23 C -0.160 4.160 24 C 0.146 3.854 25 F -0.113 7.113 26 S 0.200 5.800 27 H 0.093 0.907 28 H 0.028 0.972 29 H 0.016 0.984 30 H 0.266 0.734 31 H 0.386 0.614 32 H 0.192 0.808 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.307 -14.657 18.900 25.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.164 3.836 3 H 0.071 0.929 4 C -0.576 4.576 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.731 3.269 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.346 5.346 13 C 0.361 3.639 14 O -0.414 6.414 15 C -0.394 4.394 16 C -0.050 4.050 17 N -0.172 5.172 18 C -0.210 4.210 19 C -0.066 4.066 20 C -0.093 4.093 21 C -0.147 4.147 22 C -0.096 4.096 23 C -0.178 4.178 24 C 0.123 3.877 25 F -0.091 7.091 26 S 0.459 5.541 27 H 0.111 0.889 28 H 0.047 0.953 29 H 0.035 0.965 30 H 0.076 0.924 31 H 0.219 0.781 32 H 0.209 0.791 33 H 0.154 0.846 34 H 0.155 0.845 35 H 0.155 0.845 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.103 -14.324 18.541 24.482 hybrid contribution 0.174 0.277 -0.577 0.663 sum 7.276 -14.047 17.963 23.937 Atomic orbital electron populations 1.22097 0.98110 0.99318 1.01158 1.18850 0.91257 0.94085 0.79452 0.92942 1.21143 1.32835 1.13410 0.90214 0.92053 1.24882 0.94707 0.94933 0.99065 1.69887 1.35560 1.22325 1.24150 0.86478 0.79205 0.79588 0.81673 1.20087 1.21056 1.20100 1.46535 1.64440 1.13255 1.10322 1.16743 0.78952 0.86440 0.81767 1.90815 1.51482 1.14749 1.84385 1.26678 1.14417 0.96950 1.01401 1.22425 0.95856 1.00868 0.85813 1.66439 1.14714 1.00669 1.35396 1.25009 1.04700 0.94778 0.96486 1.17993 1.04913 0.92212 0.91433 1.21137 0.97151 0.90536 1.00457 1.21102 1.00289 0.99622 0.93684 1.21186 0.96992 0.95900 0.95521 1.21181 1.03061 0.92770 1.00833 1.17712 0.98292 0.80893 0.90819 1.91605 1.91962 1.38541 1.86996 1.83635 1.56296 1.07841 1.06348 0.88860 0.95329 0.96480 0.92390 0.78110 0.79133 0.84576 0.84471 0.84533 0.84100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.26 37.16 0.34 -3.32 16 2 C 0.26 6.72 2.56 -69.09 -0.18 6.54 16 3 H 0.05 1.52 7.58 -51.93 -0.39 1.13 16 4 C -0.54 -14.10 8.73 -34.44 -0.30 -14.40 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -24.55 11.32 55.43 0.63 -23.93 16 8 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 9 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 10 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 N -0.70 -14.83 5.06 -56.29 -0.29 -15.11 16 13 C 0.58 12.05 7.75 -12.91 -0.10 11.95 16 14 O -0.53 -12.96 16.53 5.18 0.09 -12.88 16 15 C -0.27 -4.55 6.52 -36.73 -0.24 -4.79 16 16 C 0.11 1.76 11.15 -18.55 -0.21 1.55 16 17 N -0.46 -7.16 9.02 -12.02 -0.11 -7.27 16 18 C 0.06 0.83 7.13 -14.30 -0.10 0.73 16 19 C -0.06 -0.69 5.88 -104.92 -0.62 -1.31 16 20 C -0.07 -0.60 9.56 -39.19 -0.37 -0.97 16 21 C -0.13 -0.79 10.03 -39.63 -0.40 -1.18 16 22 C -0.08 -0.44 10.04 -39.50 -0.40 -0.84 16 23 C -0.16 -1.22 10.01 -39.57 -0.40 -1.62 16 24 C 0.15 1.61 7.29 -38.99 -0.28 1.33 16 25 F -0.11 -1.51 15.70 2.25 0.04 -1.47 16 26 S 0.20 2.59 21.12 -107.50 -2.27 0.32 16 27 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 28 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.39 7.16 7.72 -40.82 -0.32 6.84 16 32 H 0.19 2.88 8.06 -52.48 -0.42 2.45 16 33 H 0.14 0.93 7.22 -52.49 -0.38 0.56 16 34 H 0.14 0.48 8.06 -52.48 -0.42 0.05 16 35 H 0.14 0.39 8.06 -52.49 -0.42 -0.03 16 36 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 333.97 15.07 5.03 5.03 Total: -1.00 -31.75 333.97 -8.73 -40.48 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -3.48 Total: 4.16 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -3.34 Total: -4.64 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: 0.23 Total: -46.30 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.09 Total: -12.88 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 16 Polarization: 2.59 SS G_CDS: -2.27 Total: 0.32 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.75 -8.73 -40.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194629669.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.744 kcal (2) G-P(sol) polarization free energy of solvation -31.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds