Wall clock time and date at job start Tue Mar 31 2020 12:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46793 * 2 1 4 4 C 1.50696 * 109.46822 * 240.00166 * 2 1 3 5 5 H 1.07998 * 119.99963 * 239.99760 * 4 2 1 6 6 C 1.37876 * 120.00420 * 60.00010 * 4 2 1 7 7 N 1.31517 * 119.99594 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00500 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47211 * 59.99674 * 8 6 4 10 10 H 1.48500 * 109.47184 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.46770 * 299.99441 * 8 6 4 12 12 N 1.46493 * 109.47239 * 120.00205 * 2 1 3 13 13 C 1.34778 * 119.99967 * 274.99883 * 12 2 1 14 14 O 1.21711 * 120.00028 * 0.02562 * 13 12 2 15 15 C 1.46552 * 120.00351 * 180.02562 * 13 12 2 16 16 C 1.36874 * 126.12439 * 179.97438 * 15 13 12 17 17 N 1.30637 * 114.04525 * 179.80113 * 16 15 13 18 18 C 1.30367 * 117.29055 * 0.45210 * 17 16 15 19 19 C 1.47723 * 124.75161 * 179.83213 * 18 17 16 20 20 C 1.39623 * 120.15843 * 179.71250 * 19 18 17 21 21 C 1.37901 * 119.87122 * 179.97438 * 20 19 18 22 22 C 1.38428 * 120.21100 * 0.03137 * 21 20 19 23 23 C 1.38260 * 120.32573 * 359.66732 * 22 21 20 24 24 C 1.38258 * 120.11756 * 0.60924 * 23 22 21 25 25 F 1.35104 * 120.10120 * 179.69216 * 24 23 22 26 26 S 1.70930 * 110.49582 * 359.56385 * 18 17 16 27 27 H 1.08994 * 109.47643 * 60.00079 * 1 2 3 28 28 H 1.09007 * 109.47212 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47428 * 299.99815 * 1 2 3 30 30 H 0.97000 * 119.99962 * 179.97438 * 7 6 4 31 31 H 0.96996 * 120.00457 * 95.00134 * 12 2 1 32 32 H 1.08004 * 122.97607 * 0.03747 * 16 15 13 33 33 H 1.08001 * 120.06504 * 359.96404 * 20 19 18 34 34 H 1.08006 * 119.89429 * 180.02562 * 21 20 19 35 35 H 1.07998 * 119.83287 * 179.97438 * 22 21 20 36 36 H 1.07997 * 119.93875 * 180.32766 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6033 8 14 2.3212 -1.1203 -4.0080 9 1 1.8256 -2.5201 -4.0078 10 1 1.8257 -0.4205 -5.2205 11 1 3.8062 -1.1208 -4.0083 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8572 1.1625 2.4119 15 6 2.6362 -0.7090 3.5535 16 6 2.8148 -0.1514 4.7907 17 7 3.2596 -0.9863 5.6917 18 6 3.4822 -2.2133 5.3114 19 6 3.9874 -3.2885 6.1895 20 6 4.1860 -4.5738 5.6815 21 6 4.6583 -5.5729 6.5064 22 6 4.9355 -5.3055 7.8360 23 6 4.7478 -4.0343 8.3463 24 6 4.2694 -3.0239 7.5329 25 9 4.0802 -1.7833 8.0335 26 16 3.1004 -2.4056 3.6564 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.7086 1.1613 -3.4843 31 1 2.2491 -1.6317 1.1526 32 1 2.6030 0.8859 5.0042 33 1 3.9699 -4.7851 4.6447 34 1 4.8125 -6.5671 6.1137 35 1 5.3048 -6.0927 8.4766 36 1 4.9710 -3.8314 9.3833 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194629669.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:34 Heat of formation + Delta-G solvation = -31.825998 kcal Electronic energy + Delta-G solvation = -22861.890289 eV Core-core repulsion = 19158.479478 eV Total energy + Delta-G solvation = -3703.410812 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.074 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.84154 -41.25014 -40.37711 -39.55718 -36.81642 -34.46204 -33.61239 -31.76858 -31.43723 -29.99195 -27.39787 -27.07704 -24.37040 -23.82277 -23.33506 -21.85179 -20.92271 -20.00187 -18.66044 -18.39333 -17.60724 -17.38458 -16.89160 -16.84110 -16.74988 -16.28821 -16.19568 -15.48930 -15.35061 -15.24445 -14.85905 -14.65659 -14.47646 -14.12571 -13.77933 -13.35693 -13.08300 -12.92446 -12.82775 -12.78902 -12.73065 -12.30548 -12.22009 -12.17082 -11.31557 -11.17488 -11.04729 -10.85797 -10.62639 -10.57476 -9.96248 -9.88002 -9.33979 -8.19645 -6.38204 -1.25856 -0.06290 0.16465 0.18339 0.35840 1.41586 1.45682 1.47992 1.55845 2.09878 2.20941 2.46500 2.61878 2.75659 3.10998 3.21641 3.59870 3.76639 3.82367 4.07391 4.09268 4.27453 4.31297 4.69528 4.72748 4.86284 4.87409 5.00219 5.02774 5.10116 5.26252 5.33935 5.37618 5.48860 5.60646 5.81033 5.82726 6.03414 6.40107 6.64758 6.73210 7.17517 7.36392 8.86759 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.022795 B = 0.002862 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.068897 B = 9780.003728 C =10777.309205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.271 3.729 3 H 0.004 0.996 4 C -0.552 4.552 5 H 0.075 0.925 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.975 3.025 9 H -0.261 1.261 10 H -0.286 1.286 11 H -0.270 1.270 12 N -0.695 5.695 13 C 0.582 3.418 14 O -0.581 6.581 15 C -0.318 4.318 16 C 0.121 3.879 17 N -0.489 5.489 18 C 0.073 3.927 19 C -0.097 4.097 20 C -0.072 4.072 21 C -0.119 4.119 22 C -0.058 4.058 23 C -0.160 4.160 24 C 0.117 3.883 25 F -0.137 7.137 26 S 0.269 5.731 27 H 0.072 0.928 28 H 0.043 0.957 29 H 0.013 0.987 30 H 0.267 0.733 31 H 0.401 0.599 32 H 0.189 0.811 33 H 0.149 0.851 34 H 0.174 0.826 35 H 0.177 0.823 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.963 -19.280 19.772 29.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.168 3.832 3 H 0.022 0.978 4 C -0.590 4.590 5 H 0.093 0.907 6 C -0.184 4.184 7 N -0.554 5.554 8 Si 0.799 3.201 9 H -0.186 1.186 10 H -0.212 1.212 11 H -0.195 1.195 12 N -0.344 5.344 13 C 0.367 3.633 14 O -0.463 6.463 15 C -0.443 4.443 16 C -0.039 4.039 17 N -0.204 5.204 18 C -0.197 4.197 19 C -0.102 4.102 20 C -0.093 4.093 21 C -0.137 4.137 22 C -0.076 4.076 23 C -0.178 4.178 24 C 0.094 3.906 25 F -0.115 7.115 26 S 0.530 5.470 27 H 0.090 0.910 28 H 0.062 0.938 29 H 0.032 0.968 30 H 0.076 0.924 31 H 0.236 0.764 32 H 0.206 0.794 33 H 0.167 0.833 34 H 0.192 0.808 35 H 0.194 0.806 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 8.770 -18.999 19.420 28.548 hybrid contribution -0.237 1.520 -0.627 1.661 sum 8.533 -17.479 18.793 27.046 Atomic orbital electron populations 1.21928 0.97877 0.99756 0.99886 1.18479 0.91437 0.92114 0.81174 0.97777 1.21473 1.33086 1.13840 0.90580 0.90672 1.25816 0.94715 0.95546 1.02344 1.70042 1.36676 1.23818 1.24867 0.85356 0.78671 0.78784 0.77304 1.18588 1.21161 1.19505 1.46231 1.64781 1.13814 1.09528 1.17105 0.77738 0.85962 0.82451 1.90772 1.53371 1.16876 1.85314 1.26137 1.18269 0.99941 0.99920 1.22482 0.94551 1.01099 0.85767 1.66538 1.16753 1.01626 1.35447 1.25659 1.01842 0.94750 0.97405 1.18213 1.07628 0.92788 0.91558 1.21414 0.96685 0.89673 1.01509 1.21585 0.98158 1.00469 0.93499 1.21725 0.94320 0.95717 0.95883 1.21504 1.02158 0.92744 1.01444 1.18183 0.99975 0.80923 0.91484 1.91542 1.92431 1.40229 1.87293 1.83180 1.54908 1.03885 1.05032 0.90979 0.93837 0.96834 0.92385 0.76401 0.79422 0.83300 0.80850 0.80569 0.82284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.94 9.26 71.98 0.67 -6.28 16 2 C 0.27 14.24 2.56 44.25 0.11 14.36 16 3 H 0.00 0.27 7.58 -2.39 -0.02 0.25 16 4 C -0.55 -29.11 8.73 25.60 0.22 -28.88 16 5 H 0.08 3.66 7.74 -2.91 -0.02 3.64 16 6 C 0.02 0.87 5.30 84.65 0.45 1.31 16 7 N -0.92 -52.24 11.32 21.45 0.24 -52.00 16 8 Si 0.97 41.30 29.54 68.60 2.03 43.33 16 9 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 10 H -0.29 -12.07 7.11 99.48 0.71 -11.37 16 11 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 12 N -0.70 -30.28 5.06 -450.20 -2.28 -32.56 16 13 C 0.58 25.36 7.75 86.41 0.67 26.03 16 14 O -0.58 -30.04 16.53 -4.38 -0.07 -30.11 16 15 C -0.32 -11.04 6.52 24.12 0.16 -10.88 16 16 C 0.12 4.09 11.15 84.55 0.94 5.03 16 17 N -0.49 -15.63 9.02 -191.95 -1.73 -17.37 16 18 C 0.07 1.95 7.13 87.42 0.62 2.57 16 19 C -0.10 -2.04 5.88 -20.06 -0.12 -2.16 16 20 C -0.07 -0.95 9.56 22.52 0.22 -0.74 16 21 C -0.12 -0.84 10.03 22.24 0.22 -0.62 16 22 C -0.06 -0.37 10.04 22.32 0.22 -0.15 16 23 C -0.16 -1.97 10.01 22.28 0.22 -1.74 16 24 C 0.12 2.46 7.29 22.65 0.17 2.62 16 25 F -0.14 -3.71 15.70 44.97 0.71 -3.01 16 26 S 0.27 6.68 21.12 -56.49 -1.19 5.49 16 27 H 0.07 4.00 6.07 -2.39 -0.01 3.98 16 28 H 0.04 2.03 8.14 -2.38 -0.02 2.01 16 29 H 0.01 0.65 8.14 -2.38 -0.02 0.63 16 30 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 31 H 0.40 14.77 7.72 -92.71 -0.72 14.05 16 32 H 0.19 6.15 8.06 -2.91 -0.02 6.12 16 33 H 0.15 1.48 7.22 -2.91 -0.02 1.46 16 34 H 0.17 0.05 8.06 -2.91 -0.02 0.02 16 35 H 0.18 -0.18 8.06 -2.91 -0.02 -0.20 16 36 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 Total: -1.00 -73.29 333.97 2.90 -70.39 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.43 Total: 15.36 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: 4.78 Total: 0.47 kcal Atomic # 7 Polarization: -98.15 SS G_CDS: -3.77 Total: -101.92 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -0.07 Total: -30.11 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.71 Total: -3.01 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Atomic # 16 Polarization: 6.68 SS G_CDS: -1.19 Total: 5.49 kcal Total: -73.29 2.90 -70.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194629669.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.567 kcal (2) G-P(sol) polarization free energy of solvation -73.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds